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***  TLR_8_simulation  ***

<R2> analysis for 2608260327253941399

---  normal mode 7  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.1054
GLU 270.0016
PRO 280.0017
CYS 290.0015
VAL 300.0017
GLU 310.0018
VAL 320.0018
VAL 330.0019
PRO 340.0020
ASN 350.0018
ILE 360.0017
THR 370.0015
TYR 380.0014
GLN 390.0014
CYS 400.0013
MET 410.0012
GLU 420.0013
LEU 430.0014
ASN 440.0013
PHE 450.0011
TYR 460.0010
LYS 470.0008
ILE 480.0008
PRO 490.0010
ASP 500.0010
ASN 510.0013
LEU 520.0014
PRO 530.0015
PHE 540.0014
SER 550.0016
THR 560.0014
LYS 570.0014
ASN 580.0013
LEU 590.0011
ASP 600.0010
LEU 610.0009
SER 620.0009
PHE 630.0011
ASN 640.0011
PRO 650.0010
LEU 660.0008
ARG 670.0009
HIS 680.0007
LEU 690.0006
GLY 700.0006
SER 710.0007
TYR 720.0007
SER 730.0005
PHE 740.0007
PHE 750.0008
SER 760.0010
PHE 770.0011
PRO 780.0012
GLU 790.0014
LEU 800.0012
GLN 810.0012
VAL 820.0010
LEU 830.0008
ASP 840.0008
LEU 850.0006
SER 860.0007
ARG 870.0009
CYS 880.0008
GLU 890.0009
ILE 900.0008
GLN 910.0009
THR 920.0008
ILE 930.0007
GLU 940.0008
ASP 950.0009
GLY 960.0009
ALA 970.0006
TYR 980.0007
GLN 990.0009
SER 1000.0010
LEU 1010.0010
SER 1020.0013
HIS 1030.0013
LEU 1040.0011
SER 1050.0011
THR 1060.0009
LEU 1070.0007
ILE 1080.0006
LEU 1090.0005
THR 1100.0006
GLY 1110.0007
ASN 1120.0008
PRO 1130.0010
ILE 1140.0009
GLN 1150.0011
SER 1160.0011
LEU 1170.0010
ALA 1180.0011
LEU 1190.0012
GLY 1200.0011
ALA 1210.0009
PHE 1220.0009
SER 1230.0011
GLY 1240.0011
LEU 1250.0011
SER 1260.0014
SER 1270.0014
LEU 1280.0011
GLN 1290.0012
LYS 1300.0009
LEU 1310.0007
VAL 1320.0006
ALA 1330.0005
VAL 1340.0005
GLU 1350.0007
THR 1360.0007
ASN 1370.0010
LEU 1380.0009
ALA 1390.0012
SER 1400.0012
LEU 1410.0012
GLU 1420.0014
ASN 1430.0013
PHE 1440.0011
PRO 1450.0011
ILE 1460.0011
GLY 1470.0014
HIS 1480.0014
LEU 1490.0013
LYS 1500.0015
THR 1510.0014
LEU 1520.0012
LYS 1530.0012
GLU 1540.0009
LEU 1550.0008
ASN 1560.0006
VAL 1570.0006
ALA 1580.0006
HIS 1590.0007
ASN 1600.0008
LEU 1610.0011
ILE 1620.0011
GLN 1630.0013
SER 1640.0014
PHE 1650.0013
LYS 1660.0015
LEU 1670.0015
PRO 1680.0016
GLU 1690.0018
TYR 1700.0016
PHE 1710.0015
SER 1720.0018
ASN 1730.0017
LEU 1740.0015
THR 1750.0017
ASN 1760.0015
LEU 1770.0013
GLU 1780.0012
HIS 1790.0010
LEU 1800.0009
ASP 1810.0007
LEU 1820.0007
SER 1830.0006
SER 1840.0007
ASN 1850.0009
LYS 1860.0011
ILE 1870.0012
GLN 1880.0013
SER 1890.0015
ILE 1900.0015
TYR 1910.0018
CYS 1920.0019
THR 1930.0020
ASP 1940.0017
LEU 1950.0017
ARG 1960.0019
VAL 1970.0018
LEU 1980.0017
HIS 1990.0020
GLN 2000.0021
MET 2010.0019
PRO 2020.0020
LEU 2030.0020
LEU 2040.0017
ASN 2050.0015
LEU 2060.0013
SER 2070.0010
LEU 2080.0009
ASP 2090.0007
LEU 2100.0007
SER 2110.0006
LEU 2120.0007
ASN 2130.0009
PRO 2140.0011
MET 2150.0011
ASN 2160.0014
PHE 2170.0015
ILE 2180.0015
GLN 2190.0017
PRO 2200.0018
GLY 2210.0019
ALA 2220.0018
PHE 2230.0016
LYS 2240.0019
GLU 2250.0019
ILE 2260.0017
ARG 2270.0016
LEU 2280.0014
HIS 2290.0013
LYS 2300.0011
LEU 2310.0009
THR 2320.0007
LEU 2330.0007
ARG 2340.0005
ASN 2350.0006
ASN 2360.0008
PHE 2370.0009
ASP 2380.0011
SER 2390.0010
LEU 2400.0009
ASN 2410.0012
VAL 2420.0012
MET 2430.0010
LYS 2440.0011
THR 2450.0013
CYS 2460.0012
ILE 2470.0012
GLN 2480.0014
GLY 2490.0015
LEU 2500.0014
ALA 2510.0016
GLY 2520.0017
LEU 2530.0015
GLU 2540.0016
VAL 2550.0014
HIS 2560.0014
ARG 2570.0011
LEU 2580.0009
VAL 2590.0007
LEU 2600.0006
GLY 2610.0004
GLU 2620.0005
PHE 2630.0006
ARG 2640.0008
ASN 2650.0009
GLU 2660.0009
GLY 2670.0009
ASN 2680.0008
LEU 2690.0008
GLU 2700.0009
LYS 2710.0008
PHE 2720.0006
ASP 2730.0006
LYS 2740.0006
SER 2750.0009
ALA 2760.0008
LEU 2770.0008
GLU 2780.0011
GLY 2790.0012
LEU 2800.0011
CYS 2810.0013
ASN 2820.0015
LEU 2830.0015
THR 2840.0015
ILE 2850.0013
GLU 2860.0014
GLU 2870.0012
PHE 2880.0009
ARG 2890.0007
LEU 2900.0005
ALA 2910.0004
TYR 2920.0004
LEU 2930.0004
ASP 2940.0006
TYR 2950.0005
TYR 2960.0005
LEU 2970.0004
ASP 2980.0004
GLY 2990.0005
ILE 3000.0006
ILE 3010.0006
ASP 3020.0007
LEU 3030.0006
PHE 3040.0008
ASN 3050.0010
CYS 3060.0011
LEU 3070.0011
THR 3080.0013
ASN 3090.0015
VAL 3100.0014
SER 3110.0015
SER 3120.0013
PHE 3130.0010
SER 3140.0009
LEU 3150.0007
VAL 3160.0006
SER 3170.0005
VAL 3180.0005
THR 3190.0006
ILE 3200.0006
GLU 3210.0007
ARG 3220.0008
VAL 3230.0009
LYS 3240.0011
ASP 3250.0010
PHE 3260.0011
SER 3270.0013
TYR 3280.0012
ASN 3290.0015
PHE 3300.0014
GLY 3310.0016
TRP 3320.0015
GLN 3330.0016
HIS 3340.0014
LEU 3350.0012
GLU 3360.0011
LEU 3370.0009
VAL 3380.0009
ASN 3390.0008
CYS 3400.0008
LYS 3410.0009
PHE 3420.0010
GLY 3430.0011
GLN 3440.0013
PHE 3450.0014
PRO 3460.0013
THR 3470.0014
LEU 3480.0015
LYS 3490.0016
LEU 3500.0017
LYS 3510.0019
SER 3520.0019
LEU 3530.0017
LYS 3540.0019
ARG 3550.0017
LEU 3560.0016
THR 3570.0013
PHE 3580.0013
THR 3590.0012
SER 3600.0011
ASN 3610.0011
LYS 3620.0012
GLY 3630.0013
GLY 3640.0015
ASN 3650.0016
ALA 3660.0019
PHE 3670.0019
SER 3680.0019
GLU 3690.0020
VAL 3700.0019
ASP 3710.0020
LEU 3720.0020
PRO 3730.0022
SER 3740.0022
LEU 3750.0022
GLU 3760.0023
PHE 3770.0020
LEU 3780.0018
ASP 3790.0016
LEU 3800.0016
SER 3810.0016
ARG 3820.0014
ASN 3830.0014
GLY 3840.0017
LEU 3850.0018
SER 3860.0020
PHE 3870.0022
LYS 3880.0024
GLY 3890.0026
CYS 3900.0025
CYS 3910.0026
SER 3920.0026
GLN 3930.0026
SER 3940.0025
ASP 3950.0023
PHE 3960.0022
GLY 3970.0023
THR 3980.0024
ILE 3990.0026
SER 4000.0025
LEU 4010.0024
LYS 4020.0024
TYR 4030.0022
LEU 4040.0021
ASP 4050.0018
LEU 4060.0019
SER 4070.0018
PHE 4080.0017
ASN 4090.0018
GLY 4100.0020
VAL 4110.0023
ILE 4120.0024
THR 4130.0027
MET 4140.0028
SER 4150.0030
SER 4160.0030
ASN 4170.0030
PHE 4180.0028
LEU 4190.0030
GLY 4200.0029
LEU 4210.0027
GLU 4220.0029
GLN 4230.0027
LEU 4240.0025
GLU 4250.0025
HIS 4260.0023
LEU 4270.0023
ASP 4280.0021
PHE 4290.0021
GLN 4300.0020
HIS 4310.0020
SER 4320.0021
ASN 4330.0024
LEU 4340.0026
LYS 4350.0029
GLN 4360.0031
MET 4370.0031
SER 4380.0034
GLU 4390.0035
PHE 4400.0035
SER 4410.0035
VAL 4420.0031
PHE 4430.0031
LEU 4440.0033
SER 4450.0032
LEU 4460.0030
ARG 4470.0033
ASN 4480.0031
LEU 4490.0028
ILE 4500.0028
TYR 4510.0025
LEU 4520.0025
ASP 4530.0023
ILE 4540.0024
SER 4550.0023
HIS 4560.0023
THR 4570.0024
HIS 4580.0027
THR 4590.0029
ARG 4600.0032
VAL 4610.0034
ALA 4620.0037
PHE 4630.0038
ASN 4640.0039
GLY 4650.0038
ILE 4660.0034
PHE 4670.0034
ASN 4680.0036
GLY 4690.0035
LEU 4700.0033
SER 4710.0035
SER 4720.0033
LEU 4730.0031
GLU 4740.0029
VAL 4750.0027
LEU 4760.0027
LYS 4770.0025
MET 4780.0026
ALA 4790.0025
GLY 4800.0026
ASN 4810.0028
SER 4820.0032
PHE 4830.0035
GLN 4840.0038
GLU 4850.0040
ASN 4860.0037
PHE 4870.0038
LEU 4880.0037
PRO 4890.0039
ASP 4900.0040
ILE 4910.0037
PHE 4920.0036
THR 4930.0039
GLU 4940.0038
LEU 4950.0035
ARG 4960.0037
ASN 4970.0034
LEU 4980.0032
THR 4990.0030
PHE 5000.0028
LEU 5010.0029
ASP 5020.0027
LEU 5030.0029
SER 5040.0027
GLN 5050.0027
CYS 5060.0030
GLN 5070.0032
LEU 5080.0034
GLU 5090.0037
GLN 5100.0039
LEU 5110.0039
SER 5120.0041
PRO 5130.0042
THR 5140.0042
ALA 5150.0039
PHE 5160.0038
ASN 5170.0041
SER 5180.0040
LEU 5190.0037
SER 5200.0038
SER 5210.0035
LEU 5220.0033
GLN 5230.0031
VAL 5240.0028
LEU 5250.0030
ASN 5260.0028
MET 5270.0030
SER 5280.0027
HIS 5290.0027
ASN 5300.0031
ASN 5310.0033
PHE 5320.0035
PHE 5330.0037
SER 5340.0038
LEU 5350.0037
ASP 5360.0040
THR 5370.0039
PHE 5380.0042
PRO 5390.0040
TYR 5400.0038
LYS 5410.0041
CYS 5420.0041
LEU 5430.0038
ASN 5440.0038
SER 5450.0035
LEU 5460.0033
GLN 5470.0031
VAL 5480.0029
LEU 5490.0030
ASP 5500.0028
TYR 5510.0029
SER 5520.0027
LEU 5530.0027
ASN 5540.0030
HIS 5550.0033
ILE 5560.0034
MET 5570.0036
THR 5580.0038
SER 5590.0040
LYS 5600.0043
LYS 5610.0044
GLN 5620.0044
GLU 5630.0043
LEU 5640.0040
GLN 5650.0042
HIS 5660.0042
PHE 5670.0038
PRO 5680.0038
SER 5690.0038
SER 5700.0035
LEU 5710.0033
ALA 5720.0030
PHE 5730.0028
LEU 5740.0029
ASN 5750.0027
LEU 5760.0029
THR 5770.0026
GLN 5780.0026
ASN 5790.0030
ASP 5800.0032
PHE 5810.0033
ALA 5820.0036
CYS 5830.0036
THR 5840.0039
CYS 5850.0041
GLU 5860.0043
HIS 5870.0041
GLN 5880.0040
SER 5890.0041
PHE 5900.0038
LEU 5910.0036
GLN 5920.0037
TRP 5930.0037
ILE 5940.0034
LYS 5950.0033
ASP 5960.0036
GLN 5970.0034
ARG 5980.0030
GLN 5990.0030
LEU 6000.0030
LEU 6010.0028
VAL 6020.0025
GLU 6030.0023
VAL 6040.0025
GLU 6050.0023
ARG 6060.0023
MET 6070.0027
GLU 6080.0028
CYS 6090.0031
ALA 6100.0032
THR 6110.0036
PRO 6120.0036
SER 6130.0035
ASP 6140.0034
LYS 6150.0032
GLN 6160.0031
GLY 6170.0028
MET 6180.0028
PRO 6190.0027
VAL 6200.0030
LEU 6210.0030
SER 6220.0029
LEU 6230.0032
ASN 6240.0034
ILE 6250.0037
THR 6260.0040
CYS 6270.0042
GLU 10.0656
ALA 20.0631
ALA 30.0601
ALA 40.0556
LYS 50.0525
MET 60.0499
GLN 70.0465
ARG 80.0424
LEU 90.0399
VAL 100.0370
LEU 110.0334
LEU 120.0301
LEU 130.0277
ALA 140.0251
ILE 150.0211
SER 160.0189
LEU 170.0169
LEU 180.0151
LEU 190.0114
TYR 200.0097
GLN 210.0084
ASP 220.0072
LEU 230.0039
PRO 240.0034
VAL 250.0029
ARG 260.0032
SER 270.0027
GLU 280.0027
PHE 290.0025
GLU 300.0021
LEU 310.0020
ASP 320.0021
ARG 330.0018
ILE 340.0016
CYS 350.0016
GLY 360.0014
TYR 370.0014
GLY 380.0013
THR 390.0012
ALA 400.0013
ARG 410.0015
CYS 420.0018
ARG 430.0018
LYS 440.0020
LYS 450.0018
CYS 460.0016
ARG 470.0014
SER 480.0012
GLN 490.0011
GLU 500.0012
TYR 510.0014
ARG 520.0016
ILE 530.0017
GLY 540.0019
ARG 550.0020
CYS 560.0021
PRO 570.0023
ASN 580.0024
THR 590.0023
TYR 600.0021
ALA 610.0019
CYS 620.0017
CYS 630.0015
LEU 640.0013
ARG 650.0011
LYS 660.0010
TRP 670.0009
ASP 680.0007
GLU 690.0006
SER 700.0005
LEU 710.0005
LEU 720.0007
ASN 730.0007
ARG 740.0006
THR 750.0008
LYS 760.0011
PRO 770.0013
GLU 780.0013
ALA 790.0016
ALA 800.0016
ALA 810.0030
LYS 820.0029
LYS 830.0029
GLU 840.0035
MET 850.0033
ASN 860.0036
LEU 870.0031
SER 880.0035
VAL 890.0032
GLY 900.0037
LEU 910.0038
GLY 920.0043
GLY 930.0051
GLY 940.0054
SER 950.0049
ASN 960.0045
LEU 970.0041
SER 980.0042
VAL 990.0038
GLY 1000.0041
LEU 1010.0035
GLY 1020.0037
GLU 1030.0033
ILE 1040.0035
GLY 1050.0032
GLY 1060.0031
GLY 1070.0032
SER 1080.0027
LYS 1090.0027
LEU 1100.0026
LEU 1110.0025
ASP 1120.0027
ILE 1130.0026
ASN 1140.0029
LEU 1150.0026
GLY 1160.0032
ARG 1170.0028
GLY 1180.0033
GLY 1190.0029
GLY 1200.0033
SER 1210.0031
MET 1220.0031
VAL 1230.0026
ASP 1240.0028
LEU 1250.0023
THR 1260.0027
PHE 1270.0024
GLY 1280.0029
GLY 1290.0025
VAL 1300.0024
GLY 1310.0024
GLY 1320.0019
GLY 1330.0012
SER 1340.0012
THR 1350.0006
PHE 1360.0009
THR 1370.0015
PHE 1380.0012
PHE 1390.0020
PRO 1400.0019
LEU 1410.0020
VAL 1420.0021
ILE 1430.0015
GLY 1440.0016
GLY 1450.0010
GLY 1460.0010
SER 1470.0012
ASP 1480.0012
ALA 1490.0014
MET 1500.0011
TYR 1510.0016
LEU 1520.0014
GLY 1530.0019
PHE 1540.0017
ALA 1550.0022
ALA 1560.0019
GLY 1570.0012
GLY 1580.0005
GLY 1590.0002
SER 1600.0009
ALA 1610.0013
GLY 1620.0018
GLY 1630.0022
GLU 1640.0023
ASN 1650.0019
HIS 1660.0023
VAL 1670.0020
ALA 1680.0027
PHE 1690.0025
GLY 1700.0034
PRO 1710.0044
GLY 1720.0050
PRO 1730.0050
GLY 1740.0043
VAL 1750.0031
ASP 1760.0031
LEU 1770.0026
THR 1780.0028
PHE 1790.0024
GLY 1800.0028
GLY 1810.0037
VAL 1820.0038
GLN 1830.0039
PHE 1840.0037
ALA 1850.0041
MET 1860.0037
VAL 1870.0065
ASN 1880.0084
ASN 1890.0104
GLY 1900.0122
PRO 1910.0236
GLY 1920.0370
PRO 1930.0465
GLY 1940.0528
GLU 1950.0453
SER 1960.0415
PHE 1970.0439
THR 1980.0427
ALA 1990.0430
GLN 2000.0515
PRO 2010.0540
ALA 2020.0664
ASP 2030.0722
MET 2040.0727
GLN 2050.0851
ALA 2060.0947
GLY 2070.1054
ILE 2080.0875
LYS 2090.0970
GLY 2100.0865
PRO 2110.0731
GLY 2120.0785
PRO 2130.0623
GLY 2140.0444
GLY 2150.0444
SER 2160.0305
ILE 2170.0229
GLN 2180.0200
VAL 2190.0107
ILE 2200.0084
ASN 2210.0050
GLY 2220.0044
SER 2230.0042
THR 2240.0037
ILE 2250.0047
GLY 2260.0050
THR 2270.0050
GLY 2280.0049
SER 2290.0049
LYS 2300.0048
LYS 2310.0047
THR 2320.0044
ILE 2330.0041
LEU 2340.0038
ILE 2350.0034
TYR 2360.0030
SER 2370.0026
ILE 2380.0023
ILE 2390.0021
GLY 2400.0018
VAL 2410.0019
LYS 2420.0020
LYS 2430.0020
GLY 2440.0024
THR 2450.0025
LEU 2460.0026
ALA 2470.0026
TRP 2480.0029
ALA 2490.0029
ARG 2500.0034
THR 2510.0035
GLY 2520.0038
PHE 2530.0038
SER 2540.0041
PRO 2550.0042
ALA 2560.0043
LYS 2570.0046
LYS 2580.0046
LEU 2590.0046
ASN 2600.0047
ALA 2610.0043
GLY 2620.0042
VAL 2630.0039
VAL 2640.0037
ARG 2650.0035
VAL 2660.0032
PHE 2670.0030
PHE 2680.0025
LEU 2690.0024
ASN 2700.0020
GLN 2710.0020
LYS 2720.0015
LYS 2730.0015
ALA 2740.0020
LYS 2750.0018
ASP 2760.0014
VAL 2770.0017
LEU 2780.0021
ARG 2790.0018
LYS 2800.0013
THR 2810.0017
SER 2820.0025
ARG 2830.0030
PRO 2840.0038
MET 2850.0047
VAL 2860.0053
ASP 2870.0068
LEU 2880.0073
THR 2890.0089
PHE 2900.0098
GLY 2910.0114
GLY 2920.0123

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.