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***  TLR_8_simulation  ***

<R2> analysis for 2608260327253941399

---  normal mode 78  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.1276
GLU 270.0018
PRO 280.0016
CYS 290.0012
VAL 300.0013
GLU 310.0016
VAL 320.0010
VAL 330.0013
PRO 340.0020
ASN 350.0022
ILE 360.0017
THR 370.0010
TYR 380.0009
GLN 390.0004
CYS 400.0005
MET 410.0004
GLU 420.0007
LEU 430.0006
ASN 440.0005
PHE 450.0003
TYR 460.0006
LYS 470.0009
ILE 480.0012
PRO 490.0012
ASP 500.0018
ASN 510.0020
LEU 520.0017
PRO 530.0021
PHE 540.0024
SER 550.0022
THR 560.0016
LYS 570.0015
ASN 580.0011
LEU 590.0009
ASP 600.0006
LEU 610.0006
SER 620.0008
PHE 630.0008
ASN 640.0006
PRO 650.0008
LEU 660.0010
ARG 670.0012
HIS 680.0013
LEU 690.0015
GLY 700.0016
SER 710.0019
TYR 720.0020
SER 730.0016
PHE 740.0016
PHE 750.0020
SER 760.0018
PHE 770.0018
PRO 780.0022
GLU 790.0019
LEU 800.0016
GLN 810.0016
VAL 820.0014
LEU 830.0013
ASP 840.0012
LEU 850.0012
SER 860.0012
ARG 870.0011
CYS 880.0011
GLU 890.0012
ILE 900.0013
GLN 910.0014
THR 920.0015
ILE 930.0016
GLU 940.0017
ASP 950.0020
GLY 960.0019
ALA 970.0017
TYR 980.0017
GLN 990.0020
SER 1000.0019
LEU 1010.0017
SER 1020.0020
HIS 1030.0017
LEU 1040.0015
SER 1050.0017
THR 1060.0015
LEU 1070.0014
ILE 1080.0013
LEU 1090.0012
THR 1100.0013
GLY 1110.0012
ASN 1120.0012
PRO 1130.0012
ILE 1140.0012
GLN 1150.0013
SER 1160.0013
LEU 1170.0015
ALA 1180.0015
LEU 1190.0016
GLY 1200.0015
ALA 1210.0015
PHE 1220.0015
SER 1230.0016
GLY 1240.0015
LEU 1250.0015
SER 1260.0016
SER 1270.0017
LEU 1280.0016
GLN 1290.0018
LYS 1300.0016
LEU 1310.0014
VAL 1320.0011
ALA 1330.0008
VAL 1340.0010
GLU 1350.0009
THR 1360.0006
ASN 1370.0008
LEU 1380.0006
ALA 1390.0009
SER 1400.0008
LEU 1410.0006
GLU 1420.0010
ASN 1430.0009
PHE 1440.0006
PRO 1450.0008
ILE 1460.0010
GLY 1470.0011
HIS 1480.0013
LEU 1490.0013
LYS 1500.0015
THR 1510.0017
LEU 1520.0015
LYS 1530.0016
GLU 1540.0014
LEU 1550.0010
ASN 1560.0009
VAL 1570.0005
ALA 1580.0008
HIS 1590.0011
ASN 1600.0009
LEU 1610.0010
ILE 1620.0011
GLN 1630.0016
SER 1640.0015
PHE 1650.0012
LYS 1660.0015
LEU 1670.0012
PRO 1680.0015
GLU 1690.0019
TYR 1700.0016
PHE 1710.0013
SER 1720.0018
ASN 1730.0018
LEU 1740.0014
THR 1750.0017
ASN 1760.0017
LEU 1770.0011
GLU 1780.0011
HIS 1790.0009
LEU 1800.0005
ASP 1810.0005
LEU 1820.0006
SER 1830.0010
SER 1840.0012
ASN 1850.0011
LYS 1860.0014
ILE 1870.0015
GLN 1880.0019
SER 1890.0020
ILE 1900.0018
TYR 1910.0021
CYS 1920.0020
THR 1930.0023
ASP 1940.0020
LEU 1950.0016
ARG 1960.0019
VAL 1970.0018
LEU 1980.0013
HIS 1990.0016
GLN 2000.0019
MET 2010.0015
PRO 2020.0015
LEU 2030.0014
LEU 2040.0011
ASN 2050.0008
LEU 2060.0003
SER 2070.0002
LEU 2080.0003
ASP 2090.0006
LEU 2100.0009
SER 2110.0011
LEU 2120.0014
ASN 2130.0014
PRO 2140.0017
MET 2150.0016
ASN 2160.0018
PHE 2170.0021
ILE 2180.0019
GLN 2190.0020
PRO 2200.0019
GLY 2210.0017
ALA 2220.0018
PHE 2230.0014
LYS 2240.0014
GLU 2250.0010
ILE 2260.0010
ARG 2270.0006
LEU 2280.0005
HIS 2290.0003
LYS 2300.0005
LEU 2310.0007
THR 2320.0009
LEU 2330.0010
ARG 2340.0011
ASN 2350.0013
ASN 2360.0013
PHE 2370.0017
ASP 2380.0017
SER 2390.0017
LEU 2400.0017
ASN 2410.0017
VAL 2420.0019
MET 2430.0018
LYS 2440.0018
THR 2450.0018
CYS 2460.0018
ILE 2470.0018
GLN 2480.0018
GLY 2490.0018
LEU 2500.0016
ALA 2510.0015
GLY 2520.0013
LEU 2530.0011
GLU 2540.0010
VAL 2550.0009
HIS 2560.0009
ARG 2570.0009
LEU 2580.0009
VAL 2590.0009
LEU 2600.0011
GLY 2610.0013
GLU 2620.0015
PHE 2630.0016
ARG 2640.0018
ASN 2650.0015
GLU 2660.0012
GLY 2670.0017
ASN 2680.0016
LEU 2690.0016
GLU 2700.0016
LYS 2710.0016
PHE 2720.0018
ASP 2730.0018
LYS 2740.0017
SER 2750.0017
ALA 2760.0017
LEU 2770.0015
GLU 2780.0016
GLY 2790.0016
LEU 2800.0014
CYS 2810.0015
ASN 2820.0016
LEU 2830.0013
THR 2840.0012
ILE 2850.0011
GLU 2860.0012
GLU 2870.0010
PHE 2880.0009
ARG 2890.0010
LEU 2900.0012
ALA 2910.0015
TYR 2920.0022
LEU 2930.0020
ASP 2940.0021
TYR 2950.0021
TYR 2960.0029
LEU 2970.0020
ASP 2980.0019
GLY 2990.0015
ILE 3000.0013
ILE 3010.0011
ASP 3020.0012
LEU 3030.0012
PHE 3040.0011
ASN 3050.0012
CYS 3060.0012
LEU 3070.0008
THR 3080.0007
ASN 3090.0007
VAL 3100.0008
SER 3110.0009
SER 3120.0011
PHE 3130.0009
SER 3140.0011
LEU 3150.0012
VAL 3160.0016
SER 3170.0022
VAL 3180.0021
THR 3190.0021
ILE 3200.0019
GLU 3210.0019
ARG 3220.0014
VAL 3230.0011
LYS 3240.0009
ASP 3250.0008
PHE 3260.0006
SER 3270.0005
TYR 3280.0004
ASN 3290.0003
PHE 3300.0004
GLY 3310.0006
TRP 3320.0007
GLN 3330.0010
HIS 3340.0009
LEU 3350.0007
GLU 3360.0009
LEU 3370.0015
VAL 3380.0017
ASN 3390.0019
CYS 3400.0017
LYS 3410.0019
PHE 3420.0013
GLY 3430.0014
GLN 3440.0011
PHE 3450.0008
PRO 3460.0008
THR 3470.0005
LEU 3480.0002
LYS 3490.0002
LEU 3500.0003
LYS 3510.0005
SER 3520.0007
LEU 3530.0006
LYS 3540.0007
ARG 3550.0006
LEU 3560.0005
THR 3570.0008
PHE 3580.0007
THR 3590.0010
SER 3600.0013
ASN 3610.0011
LYS 3620.0013
GLY 3630.0012
GLY 3640.0011
ASN 3650.0009
ALA 3660.0009
PHE 3670.0007
SER 3680.0007
GLU 3690.0006
VAL 3700.0006
ASP 3710.0006
LEU 3720.0005
PRO 3730.0006
SER 3740.0006
LEU 3750.0004
GLU 3760.0003
PHE 3770.0004
LEU 3780.0004
ASP 3790.0004
LEU 3800.0005
SER 3810.0005
ARG 3820.0006
ASN 3830.0006
GLY 3840.0005
LEU 3850.0006
SER 3860.0006
PHE 3870.0009
LYS 3880.0009
GLY 3890.0009
CYS 3900.0009
CYS 3910.0009
SER 3920.0008
GLN 3930.0008
SER 3940.0009
ASP 3950.0008
PHE 3960.0007
GLY 3970.0007
THR 3980.0007
ILE 3990.0008
SER 4000.0007
LEU 4010.0006
LYS 4020.0007
TYR 4030.0007
LEU 4040.0007
ASP 4050.0008
LEU 4060.0008
SER 4070.0010
PHE 4080.0010
ASN 4090.0009
GLY 4100.0008
VAL 4110.0008
ILE 4120.0011
THR 4130.0010
MET 4140.0010
SER 4150.0009
SER 4160.0009
ASN 4170.0008
PHE 4180.0008
LEU 4190.0008
GLY 4200.0008
LEU 4210.0009
GLU 4220.0009
GLN 4230.0010
LEU 4240.0010
GLU 4250.0012
HIS 4260.0012
LEU 4270.0013
ASP 4280.0015
PHE 4290.0014
GLN 4300.0016
HIS 4310.0017
SER 4320.0015
ASN 4330.0014
LEU 4340.0013
LYS 4350.0012
GLN 4360.0011
MET 4370.0011
SER 4380.0011
GLU 4390.0011
PHE 4400.0008
SER 4410.0006
VAL 4420.0008
PHE 4430.0008
LEU 4440.0007
SER 4450.0008
LEU 4460.0009
ARG 4470.0011
ASN 4480.0013
LEU 4490.0013
ILE 4500.0015
TYR 4510.0015
LEU 4520.0014
ASP 4530.0016
ILE 4540.0014
SER 4550.0017
HIS 4560.0019
THR 4570.0018
HIS 4580.0019
THR 4590.0015
ARG 4600.0015
VAL 4610.0011
ALA 4620.0016
PHE 4630.0012
ASN 4640.0010
GLY 4650.0007
ILE 4660.0006
PHE 4670.0005
ASN 4680.0006
GLY 4690.0008
LEU 4700.0009
SER 4710.0013
SER 4720.0015
LEU 4730.0013
GLU 4740.0016
VAL 4750.0016
LEU 4760.0012
LYS 4770.0015
MET 4780.0013
ALA 4790.0016
GLY 4800.0019
ASN 4810.0016
SER 4820.0018
PHE 4830.0016
GLN 4840.0020
GLU 4850.0023
ASN 4860.0019
PHE 4870.0016
LEU 4880.0011
PRO 4890.0011
ASP 4900.0010
ILE 4910.0006
PHE 4920.0006
THR 4930.0011
GLU 4940.0011
LEU 4950.0010
ARG 4960.0014
ASN 4970.0016
LEU 4980.0013
THR 4990.0015
PHE 5000.0014
LEU 5010.0009
ASP 5020.0011
LEU 5030.0009
SER 5040.0013
GLN 5050.0016
CYS 5060.0014
GLN 5070.0017
LEU 5080.0013
GLU 5090.0014
GLN 5100.0013
LEU 5110.0010
SER 5120.0013
PRO 5130.0013
THR 5140.0013
ALA 5150.0009
PHE 5160.0007
ASN 5170.0012
SER 5180.0013
LEU 5190.0011
SER 5200.0014
SER 5210.0015
LEU 5220.0010
GLN 5230.0011
VAL 5240.0009
LEU 5250.0006
ASN 5260.0007
MET 5270.0005
SER 5280.0008
HIS 5290.0010
ASN 5300.0009
ASN 5310.0009
PHE 5320.0003
PHE 5330.0003
SER 5340.0003
LEU 5350.0003
ASP 5360.0003
THR 5370.0004
PHE 5380.0006
PRO 5390.0006
TYR 5400.0005
LYS 5410.0006
CYS 5420.0010
LEU 5430.0008
ASN 5440.0010
SER 5450.0010
LEU 5460.0006
GLN 5470.0004
VAL 5480.0003
LEU 5490.0001
ASP 5500.0002
TYR 5510.0003
SER 5520.0004
LEU 5530.0004
ASN 5540.0003
HIS 5550.0002
ILE 5560.0002
MET 5570.0004
THR 5580.0005
SER 5590.0005
LYS 5600.0007
LYS 5610.0007
GLN 5620.0008
GLU 5630.0005
LEU 5640.0005
GLN 5650.0004
HIS 5660.0003
PHE 5670.0004
PRO 5680.0004
SER 5690.0003
SER 5700.0003
LEU 5710.0001
ALA 5720.0005
PHE 5730.0004
LEU 5740.0004
ASN 5750.0004
LEU 5760.0004
THR 5770.0008
GLN 5780.0009
ASN 5790.0007
ASP 5800.0008
PHE 5810.0007
ALA 5820.0015
CYS 5830.0013
THR 5840.0018
CYS 5850.0019
GLU 5860.0022
HIS 5870.0014
GLN 5880.0013
SER 5890.0015
PHE 5900.0011
LEU 5910.0007
GLN 5920.0011
TRP 5930.0011
ILE 5940.0007
LYS 5950.0011
ASP 5960.0014
GLN 5970.0012
ARG 5980.0011
GLN 5990.0014
LEU 6000.0011
LEU 6010.0009
VAL 6020.0014
GLU 6030.0014
VAL 6040.0011
GLU 6050.0014
ARG 6060.0014
MET 6070.0013
GLU 6080.0015
CYS 6090.0014
ALA 6100.0020
THR 6110.0022
PRO 6120.0031
SER 6130.0038
ASP 6140.0036
LYS 6150.0025
GLN 6160.0029
GLY 6170.0024
MET 6180.0017
PRO 6190.0013
VAL 6200.0007
LEU 6210.0008
SER 6220.0006
LEU 6230.0005
ASN 6240.0009
ILE 6250.0012
THR 6260.0015
CYS 6270.0110
GLU 10.0013
ALA 20.0010
ALA 30.0005
ALA 40.0003
LYS 50.0008
MET 60.0005
GLN 70.0007
ARG 80.0009
LEU 90.0009
VAL 100.0010
LEU 110.0008
LEU 120.0006
LEU 130.0004
ALA 140.0005
ILE 150.0002
SER 160.0005
LEU 170.0005
LEU 180.0008
LEU 190.0010
TYR 200.0010
GLN 210.0010
ASP 220.0011
LEU 230.0009
PRO 240.0007
VAL 250.0006
ARG 260.0025
SER 270.0020
GLU 280.0029
PHE 290.0032
GLU 300.0020
LEU 310.0018
ASP 320.0020
ARG 330.0018
ILE 340.0016
CYS 350.0017
GLY 360.0010
TYR 370.0009
GLY 380.0014
THR 390.0016
ALA 400.0016
ARG 410.0015
CYS 420.0011
ARG 430.0010
LYS 440.0015
LYS 450.0024
CYS 460.0026
ARG 470.0025
SER 480.0031
GLN 490.0027
GLU 500.0027
TYR 510.0033
ARG 520.0031
ILE 530.0034
GLY 540.0032
ARG 550.0026
CYS 560.0022
PRO 570.0028
ASN 580.0022
THR 590.0018
TYR 600.0014
ALA 610.0017
CYS 620.0019
CYS 630.0019
LEU 640.0022
ARG 650.0021
LYS 660.0029
TRP 670.0025
ASP 680.0017
GLU 690.0010
SER 700.0007
LEU 710.0015
LEU 720.0016
ASN 730.0014
ARG 740.0017
THR 750.0023
LYS 760.0031
PRO 770.0059
GLU 780.0053
ALA 790.0088
ALA 800.0106
ALA 810.0159
LYS 820.0167
LYS 830.0113
GLU 840.0093
MET 850.0056
ASN 860.0062
LEU 870.0028
SER 880.0040
VAL 890.0029
GLY 900.0046
LEU 910.0131
GLY 920.0267
GLY 930.0544
GLY 940.0573
SER 950.0434
ASN 960.0166
LEU 970.0126
SER 980.0096
VAL 990.0038
GLY 1000.0052
LEU 1010.0073
GLY 1020.0079
GLU 1030.0087
ILE 1040.0046
GLY 1050.0084
GLY 1060.0218
GLY 1070.0160
SER 1080.0128
LYS 1090.0069
LEU 1100.0055
LEU 1110.0058
ASP 1120.0065
ILE 1130.0069
ASN 1140.0104
LEU 1150.0111
GLY 1160.0165
ARG 1170.0294
GLY 1180.0325
GLY 1190.0277
GLY 1200.0202
SER 1210.0149
MET 1220.0143
VAL 1230.0112
ASP 1240.0111
LEU 1250.0100
THR 1260.0129
PHE 1270.0129
GLY 1280.0155
GLY 1290.0169
VAL 1300.0175
GLY 1310.0173
GLY 1320.0164
GLY 1330.0160
SER 1340.0149
THR 1350.0148
PHE 1360.0103
THR 1370.0069
PHE 1380.0038
PHE 1390.0022
PRO 1400.0043
LEU 1410.0098
VAL 1420.0098
ILE 1430.0103
GLY 1440.0134
GLY 1450.0223
GLY 1460.0244
SER 1470.0154
ASP 1480.0064
ALA 1490.0079
MET 1500.0064
TYR 1510.0074
LEU 1520.0052
GLY 1530.0024
PHE 1540.0041
ALA 1550.0050
ALA 1560.0088
GLY 1570.0131
GLY 1580.0144
GLY 1590.0203
SER 1600.0242
ALA 1610.0239
GLY 1620.0235
GLY 1630.0195
GLU 1640.0205
ASN 1650.0137
HIS 1660.0147
VAL 1670.0136
ALA 1680.0143
PHE 1690.0136
GLY 1700.0154
PRO 1710.0164
GLY 1720.0203
PRO 1730.0256
GLY 1740.0175
VAL 1750.0141
ASP 1760.0069
LEU 1770.0106
THR 1780.0072
PHE 1790.0109
GLY 1800.0098
GLY 1810.0244
VAL 1820.0294
GLN 1830.0247
PHE 1840.0281
ALA 1850.0284
MET 1860.0304
VAL 1870.0334
ASN 1880.0055
ASN 1890.0305
GLY 1900.0158
PRO 1910.0500
GLY 1920.0391
PRO 1930.0266
GLY 1940.0322
GLU 1950.0218
SER 1960.1222
PHE 1970.0404
THR 1980.0645
ALA 1990.0709
GLN 2000.0504
PRO 2010.0618
ALA 2020.0373
ASP 2030.0562
MET 2040.0481
GLN 2050.0275
ALA 2060.1276
GLY 2070.0807
ILE 2080.0554
LYS 2090.0058
GLY 2100.0462
PRO 2110.0732
GLY 2120.0330
PRO 2130.0354
GLY 2140.0403
GLY 2150.0280
SER 2160.0327
ILE 2170.0331
GLN 2180.0249
VAL 2190.0217
ILE 2200.0184
ASN 2210.0199
GLY 2220.0160
SER 2230.0099
THR 2240.0064
ILE 2250.0104
GLY 2260.0071
THR 2270.0059
GLY 2280.0076
SER 2290.0130
LYS 2300.0110
LYS 2310.0076
THR 2320.0066
ILE 2330.0058
LEU 2340.0037
ILE 2350.0046
TYR 2360.0049
SER 2370.0052
ILE 2380.0051
ILE 2390.0038
GLY 2400.0040
VAL 2410.0016
LYS 2420.0015
LYS 2430.0014
GLY 2440.0016
THR 2450.0016
LEU 2460.0036
ALA 2470.0030
TRP 2480.0029
ALA 2490.0028
ARG 2500.0025
THR 2510.0021
GLY 2520.0029
PHE 2530.0024
SER 2540.0039
PRO 2550.0038
ALA 2560.0041
LYS 2570.0074
LYS 2580.0071
LEU 2590.0042
ASN 2600.0050
ALA 2610.0068
GLY 2620.0048
VAL 2630.0028
VAL 2640.0020
ARG 2650.0028
VAL 2660.0051
PHE 2670.0051
PHE 2680.0051
LEU 2690.0047
ASN 2700.0063
GLN 2710.0041
LYS 2720.0019
LYS 2730.0021
ALA 2740.0029
LYS 2750.0024
ASP 2760.0006
VAL 2770.0006
LEU 2780.0013
ARG 2790.0014
LYS 2800.0008
THR 2810.0004
SER 2820.0006
ARG 2830.0007
PRO 2840.0009
MET 2850.0011
VAL 2860.0006
ASP 2870.0005
LEU 2880.0003
THR 2890.0004
PHE 2900.0002
GLY 2910.0004
GLY 2920.0010

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.