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***  TLR_8_simulation  ***

<R2> analysis for 2608260327253941399

---  normal mode 79  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0808
GLU 270.0065
PRO 280.0065
CYS 290.0040
VAL 300.0041
GLU 310.0029
VAL 320.0029
VAL 330.0019
PRO 340.0019
ASN 350.0041
ILE 360.0039
THR 370.0025
TYR 380.0012
GLN 390.0020
CYS 400.0015
MET 410.0028
GLU 420.0035
LEU 430.0036
ASN 440.0030
PHE 450.0025
TYR 460.0032
LYS 470.0035
ILE 480.0040
PRO 490.0041
ASP 500.0066
ASN 510.0066
LEU 520.0049
PRO 530.0055
PHE 540.0070
SER 550.0063
THR 560.0047
LYS 570.0053
ASN 580.0043
LEU 590.0032
ASP 600.0027
LEU 610.0019
SER 620.0029
PHE 630.0029
ASN 640.0014
PRO 650.0014
LEU 660.0026
ARG 670.0036
HIS 680.0041
LEU 690.0045
GLY 700.0049
SER 710.0054
TYR 720.0059
SER 730.0045
PHE 740.0051
PHE 750.0063
SER 760.0060
PHE 770.0057
PRO 780.0068
GLU 790.0063
LEU 800.0056
GLN 810.0059
VAL 820.0048
LEU 830.0043
ASP 840.0039
LEU 850.0036
SER 860.0040
ARG 870.0035
CYS 880.0032
GLU 890.0038
ILE 900.0041
GLN 910.0048
THR 920.0049
ILE 930.0050
GLU 940.0052
ASP 950.0057
GLY 960.0055
ALA 970.0049
TYR 980.0051
GLN 990.0058
SER 1000.0057
LEU 1010.0055
SER 1020.0052
HIS 1030.0050
LEU 1040.0046
SER 1050.0048
THR 1060.0044
LEU 1070.0040
ILE 1080.0038
LEU 1090.0038
THR 1100.0039
GLY 1110.0038
ASN 1120.0040
PRO 1130.0045
ILE 1140.0046
GLN 1150.0052
SER 1160.0052
LEU 1170.0050
ALA 1180.0051
LEU 1190.0051
GLY 1200.0049
ALA 1210.0047
PHE 1220.0045
SER 1230.0047
GLY 1240.0043
LEU 1250.0040
SER 1260.0041
SER 1270.0031
LEU 1280.0030
GLN 1290.0030
LYS 1300.0030
LEU 1310.0032
VAL 1320.0026
ALA 1330.0024
VAL 1340.0023
GLU 1350.0023
THR 1360.0023
ASN 1370.0020
LEU 1380.0013
ALA 1390.0007
SER 1400.0004
LEU 1410.0005
GLU 1420.0008
ASN 1430.0014
PHE 1440.0018
PRO 1450.0021
ILE 1460.0020
GLY 1470.0012
HIS 1480.0013
LEU 1490.0018
LYS 1500.0008
THR 1510.0015
LEU 1520.0014
LYS 1530.0015
GLU 1540.0015
LEU 1550.0014
ASN 1560.0017
VAL 1570.0010
ALA 1580.0006
HIS 1590.0006
ASN 1600.0005
LEU 1610.0009
ILE 1620.0013
GLN 1630.0015
SER 1640.0018
PHE 1650.0019
LYS 1660.0022
LEU 1670.0013
PRO 1680.0013
GLU 1690.0019
TYR 1700.0016
PHE 1710.0014
SER 1720.0018
ASN 1730.0012
LEU 1740.0009
THR 1750.0016
ASN 1760.0016
LEU 1770.0012
GLU 1780.0015
HIS 1790.0015
LEU 1800.0012
ASP 1810.0016
LEU 1820.0017
SER 1830.0015
SER 1840.0014
ASN 1850.0017
LYS 1860.0019
ILE 1870.0026
GLN 1880.0029
SER 1890.0033
ILE 1900.0034
TYR 1910.0041
CYS 1920.0036
THR 1930.0036
ASP 1940.0034
LEU 1950.0033
ARG 1960.0034
VAL 1970.0029
LEU 1980.0029
HIS 1990.0032
GLN 2000.0032
MET 2010.0030
PRO 2020.0026
LEU 2030.0027
LEU 2040.0023
ASN 2050.0025
LEU 2060.0021
SER 2070.0018
LEU 2080.0018
ASP 2090.0020
LEU 2100.0021
SER 2110.0023
LEU 2120.0022
ASN 2130.0027
PRO 2140.0032
MET 2150.0031
ASN 2160.0037
PHE 2170.0043
ILE 2180.0042
GLN 2190.0041
PRO 2200.0040
GLY 2210.0039
ALA 2220.0038
PHE 2230.0035
LYS 2240.0033
GLU 2250.0031
ILE 2260.0032
ARG 2270.0022
LEU 2280.0022
HIS 2290.0021
LYS 2300.0022
LEU 2310.0024
THR 2320.0025
LEU 2330.0027
ARG 2340.0027
ASN 2350.0029
ASN 2360.0031
PHE 2370.0048
ASP 2380.0054
SER 2390.0052
LEU 2400.0049
ASN 2410.0055
VAL 2420.0053
MET 2430.0049
LYS 2440.0049
THR 2450.0050
CYS 2460.0048
ILE 2470.0050
GLN 2480.0049
GLY 2490.0048
LEU 2500.0045
ALA 2510.0043
GLY 2520.0038
LEU 2530.0035
GLU 2540.0029
VAL 2550.0027
HIS 2560.0021
ARG 2570.0026
LEU 2580.0028
VAL 2590.0028
LEU 2600.0029
GLY 2610.0029
GLU 2620.0025
PHE 2630.0025
ARG 2640.0026
ASN 2650.0024
GLU 2660.0023
GLY 2670.0046
ASN 2680.0039
LEU 2690.0039
GLU 2700.0044
LYS 2710.0041
PHE 2720.0045
ASP 2730.0048
LYS 2740.0050
SER 2750.0056
ALA 2760.0052
LEU 2770.0050
GLU 2780.0055
GLY 2790.0056
LEU 2800.0049
CYS 2810.0051
ASN 2820.0046
LEU 2830.0041
THR 2840.0034
ILE 2850.0032
GLU 2860.0025
GLU 2870.0025
PHE 2880.0027
ARG 2890.0026
LEU 2900.0029
ALA 2910.0032
TYR 2920.0029
LEU 2930.0028
ASP 2940.0034
TYR 2950.0036
TYR 2960.0040
LEU 2970.0022
ASP 2980.0023
GLY 2990.0029
ILE 3000.0034
ILE 3010.0045
ASP 3020.0050
LEU 3030.0045
PHE 3040.0041
ASN 3050.0049
CYS 3060.0053
LEU 3070.0040
THR 3080.0040
ASN 3090.0039
VAL 3100.0035
SER 3110.0027
SER 3120.0024
PHE 3130.0022
SER 3140.0020
LEU 3150.0020
VAL 3160.0027
SER 3170.0029
VAL 3180.0020
THR 3190.0012
ILE 3200.0003
GLU 3210.0012
ARG 3220.0025
VAL 3230.0023
LYS 3240.0040
ASP 3250.0038
PHE 3260.0029
SER 3270.0037
TYR 3280.0041
ASN 3290.0044
PHE 3300.0038
GLY 3310.0040
TRP 3320.0023
GLN 3330.0016
HIS 3340.0012
LEU 3350.0009
GLU 3360.0014
LEU 3370.0023
VAL 3380.0038
ASN 3390.0046
CYS 3400.0033
LYS 3410.0036
PHE 3420.0039
GLY 3430.0051
GLN 3440.0051
PHE 3450.0043
PRO 3460.0029
THR 3470.0035
LEU 3480.0028
LYS 3490.0036
LEU 3500.0032
LYS 3510.0040
SER 3520.0021
LEU 3530.0012
LYS 3540.0006
ARG 3550.0006
LEU 3560.0005
THR 3570.0019
PHE 3580.0022
THR 3590.0036
SER 3600.0049
ASN 3610.0045
LYS 3620.0073
GLY 3630.0078
GLY 3640.0078
ASN 3650.0071
ALA 3660.0081
PHE 3670.0050
SER 3680.0053
GLU 3690.0051
VAL 3700.0041
ASP 3710.0045
LEU 3720.0028
PRO 3730.0033
SER 3740.0029
LEU 3750.0018
GLU 3760.0014
PHE 3770.0011
LEU 3780.0010
ASP 3790.0016
LEU 3800.0019
SER 3810.0026
ARG 3820.0041
ASN 3830.0044
GLY 3840.0055
LEU 3850.0046
SER 3860.0060
PHE 3870.0043
LYS 3880.0052
GLY 3890.0048
CYS 3900.0036
CYS 3910.0034
SER 3920.0036
GLN 3930.0041
SER 3940.0049
ASP 3950.0041
PHE 3960.0035
GLY 3970.0040
THR 3980.0034
ILE 3990.0035
SER 4000.0033
LEU 4010.0020
LYS 4020.0021
TYR 4030.0017
LEU 4040.0012
ASP 4050.0016
LEU 4060.0017
SER 4070.0021
PHE 4080.0032
ASN 4090.0028
GLY 4100.0036
VAL 4110.0035
ILE 4120.0026
THR 4130.0029
MET 4140.0025
SER 4150.0032
SER 4160.0031
ASN 4170.0022
PHE 4180.0024
LEU 4190.0034
GLY 4200.0038
LEU 4210.0029
GLU 4220.0029
GLN 4230.0030
LEU 4240.0021
GLU 4250.0025
HIS 4260.0021
LEU 4270.0018
ASP 4280.0018
PHE 4290.0018
GLN 4300.0018
HIS 4310.0018
SER 4320.0020
ASN 4330.0021
LEU 4340.0015
LYS 4350.0017
GLN 4360.0016
MET 4370.0010
SER 4380.0012
GLU 4390.0010
PHE 4400.0013
SER 4410.0018
VAL 4420.0011
PHE 4430.0014
LEU 4440.0018
SER 4450.0022
LEU 4460.0022
ARG 4470.0024
ASN 4480.0026
LEU 4490.0021
ILE 4500.0025
TYR 4510.0022
LEU 4520.0019
ASP 4530.0019
ILE 4540.0019
SER 4550.0019
HIS 4560.0018
THR 4570.0015
HIS 4580.0017
THR 4590.0018
ARG 4600.0021
VAL 4610.0023
ALA 4620.0024
PHE 4630.0024
ASN 4640.0029
GLY 4650.0027
ILE 4660.0022
PHE 4670.0021
ASN 4680.0024
GLY 4690.0024
LEU 4700.0023
SER 4710.0027
SER 4720.0024
LEU 4730.0021
GLU 4740.0022
VAL 4750.0020
LEU 4760.0019
LYS 4770.0018
MET 4780.0019
ALA 4790.0018
GLY 4800.0019
ASN 4810.0022
SER 4820.0022
PHE 4830.0026
GLN 4840.0032
GLU 4850.0033
ASN 4860.0028
PHE 4870.0028
LEU 4880.0025
PRO 4890.0028
ASP 4900.0029
ILE 4910.0027
PHE 4920.0025
THR 4930.0029
GLU 4940.0029
LEU 4950.0025
ARG 4960.0027
ASN 4970.0022
LEU 4980.0019
THR 4990.0016
PHE 5000.0013
LEU 5010.0013
ASP 5020.0009
LEU 5030.0012
SER 5040.0009
GLN 5050.0015
CYS 5060.0019
GLN 5070.0019
LEU 5080.0018
GLU 5090.0020
GLN 5100.0021
LEU 5110.0019
SER 5120.0025
PRO 5130.0022
THR 5140.0024
ALA 5150.0021
PHE 5160.0018
ASN 5170.0020
SER 5180.0023
LEU 5190.0019
SER 5200.0019
SER 5210.0019
LEU 5220.0011
GLN 5230.0010
VAL 5240.0007
LEU 5250.0003
ASN 5260.0003
MET 5270.0004
SER 5280.0009
HIS 5290.0015
ASN 5300.0012
ASN 5310.0013
PHE 5320.0009
PHE 5330.0011
SER 5340.0011
LEU 5350.0012
ASP 5360.0012
THR 5370.0010
PHE 5380.0007
PRO 5390.0003
TYR 5400.0007
LYS 5410.0010
CYS 5420.0008
LEU 5430.0008
ASN 5440.0013
SER 5450.0014
LEU 5460.0010
GLN 5470.0014
VAL 5480.0013
LEU 5490.0011
ASP 5500.0011
TYR 5510.0011
SER 5520.0014
LEU 5530.0015
ASN 5540.0014
HIS 5550.0014
ILE 5560.0015
MET 5570.0021
THR 5580.0020
SER 5590.0020
LYS 5600.0020
LYS 5610.0021
GLN 5620.0020
GLU 5630.0019
LEU 5640.0019
GLN 5650.0020
HIS 5660.0019
PHE 5670.0014
PRO 5680.0014
SER 5690.0018
SER 5700.0017
LEU 5710.0016
ALA 5720.0017
PHE 5730.0017
LEU 5740.0017
ASN 5750.0017
LEU 5760.0017
THR 5770.0016
GLN 5780.0016
ASN 5790.0020
ASP 5800.0021
PHE 5810.0021
ALA 5820.0030
CYS 5830.0025
THR 5840.0032
CYS 5850.0029
GLU 5860.0036
HIS 5870.0026
GLN 5880.0019
SER 5890.0021
PHE 5900.0021
LEU 5910.0015
GLN 5920.0014
TRP 5930.0016
ILE 5940.0014
LYS 5950.0013
ASP 5960.0016
GLN 5970.0016
ARG 5980.0015
GLN 5990.0016
LEU 6000.0017
LEU 6010.0017
VAL 6020.0014
GLU 6030.0012
VAL 6040.0009
GLU 6050.0008
ARG 6060.0012
MET 6070.0013
GLU 6080.0019
CYS 6090.0028
ALA 6100.0038
THR 6110.0046
PRO 6120.0058
SER 6130.0070
ASP 6140.0069
LYS 6150.0050
GLN 6160.0051
GLY 6170.0036
MET 6180.0031
PRO 6190.0019
VAL 6200.0016
LEU 6210.0010
SER 6220.0024
LEU 6230.0025
ASN 6240.0031
ILE 6250.0021
THR 6260.0030
CYS 6270.0053
GLU 10.0027
ALA 20.0027
ALA 30.0025
ALA 40.0018
LYS 50.0006
MET 60.0006
GLN 70.0013
ARG 80.0021
LEU 90.0019
VAL 100.0016
LEU 110.0016
LEU 120.0016
LEU 130.0012
ALA 140.0007
ILE 150.0009
SER 160.0009
LEU 170.0006
LEU 180.0012
LEU 190.0018
TYR 200.0020
GLN 210.0019
ASP 220.0026
LEU 230.0030
PRO 240.0028
VAL 250.0025
ARG 260.0066
SER 270.0042
GLU 280.0051
PHE 290.0039
GLU 300.0017
LEU 310.0026
ASP 320.0030
ARG 330.0022
ILE 340.0023
CYS 350.0034
GLY 360.0023
TYR 370.0021
GLY 380.0022
THR 390.0019
ALA 400.0032
ARG 410.0035
CYS 420.0051
ARG 430.0065
LYS 440.0083
LYS 450.0085
CYS 460.0059
ARG 470.0056
SER 480.0060
GLN 490.0054
GLU 500.0054
TYR 510.0063
ARG 520.0063
ILE 530.0052
GLY 540.0057
ARG 550.0066
CYS 560.0068
PRO 570.0078
ASN 580.0087
THR 590.0091
TYR 600.0084
ALA 610.0062
CYS 620.0050
CYS 630.0049
LEU 640.0041
ARG 650.0043
LYS 660.0023
TRP 670.0022
ASP 680.0020
GLU 690.0028
SER 700.0025
LEU 710.0020
LEU 720.0013
ASN 730.0010
ARG 740.0007
THR 750.0005
LYS 760.0134
PRO 770.0208
GLU 780.0200
ALA 790.0307
ALA 800.0356
ALA 810.0347
LYS 820.0339
LYS 830.0210
GLU 840.0165
MET 850.0102
ASN 860.0182
LEU 870.0191
SER 880.0190
VAL 890.0190
GLY 900.0201
LEU 910.0235
GLY 920.0521
GLY 930.0808
GLY 940.0804
SER 950.0503
ASN 960.0205
LEU 970.0172
SER 980.0181
VAL 990.0170
GLY 1000.0178
LEU 1010.0257
GLY 1020.0416
GLU 1030.0415
ILE 1040.0504
GLY 1050.0497
GLY 1060.0502
GLY 1070.0460
SER 1080.0448
LYS 1090.0309
LEU 1100.0306
LEU 1110.0136
ASP 1120.0124
ILE 1130.0114
ASN 1140.0185
LEU 1150.0191
GLY 1160.0263
ARG 1170.0336
GLY 1180.0422
GLY 1190.0342
GLY 1200.0168
SER 1210.0104
MET 1220.0104
VAL 1230.0087
ASP 1240.0091
LEU 1250.0081
THR 1260.0119
PHE 1270.0112
GLY 1280.0152
GLY 1290.0167
VAL 1300.0181
GLY 1310.0349
GLY 1320.0315
GLY 1330.0295
SER 1340.0259
THR 1350.0255
PHE 1360.0156
THR 1370.0116
PHE 1380.0074
PHE 1390.0036
PRO 1400.0016
LEU 1410.0096
VAL 1420.0245
ILE 1430.0285
GLY 1440.0419
GLY 1450.0525
GLY 1460.0522
SER 1470.0472
ASP 1480.0376
ALA 1490.0339
MET 1500.0215
TYR 1510.0112
LEU 1520.0122
GLY 1530.0113
PHE 1540.0134
ALA 1550.0138
ALA 1560.0168
GLY 1570.0218
GLY 1580.0246
GLY 1590.0336
SER 1600.0408
ALA 1610.0417
GLY 1620.0402
GLY 1630.0319
GLU 1640.0286
ASN 1650.0197
HIS 1660.0143
VAL 1670.0097
ALA 1680.0141
PHE 1690.0163
GLY 1700.0210
PRO 1710.0254
GLY 1720.0259
PRO 1730.0343
GLY 1740.0211
VAL 1750.0140
ASP 1760.0124
LEU 1770.0065
THR 1780.0217
PHE 1790.0302
GLY 1800.0456
GLY 1810.0655
VAL 1820.0521
GLN 1830.0307
PHE 1840.0174
ALA 1850.0077
MET 1860.0319
VAL 1870.0383
ASN 1880.0226
ASN 1890.0168
GLY 1900.0177
PRO 1910.0303
GLY 1920.0238
PRO 1930.0262
GLY 1940.0219
GLU 1950.0069
SER 1960.0216
PHE 1970.0102
THR 1980.0087
ALA 1990.0089
GLN 2000.0100
PRO 2010.0110
ALA 2020.0052
ASP 2030.0083
MET 2040.0101
GLN 2050.0097
ALA 2060.0162
GLY 2070.0066
ILE 2080.0076
LYS 2090.0033
GLY 2100.0124
PRO 2110.0114
GLY 2120.0108
PRO 2130.0092
GLY 2140.0067
GLY 2150.0215
SER 2160.0039
ILE 2170.0167
GLN 2180.0097
VAL 2190.0109
ILE 2200.0104
ASN 2210.0463
GLY 2220.0365
SER 2230.0258
THR 2240.0175
ILE 2250.0187
GLY 2260.0110
THR 2270.0176
GLY 2280.0239
SER 2290.0297
LYS 2300.0239
LYS 2310.0179
THR 2320.0232
ILE 2330.0108
LEU 2340.0173
ILE 2350.0097
TYR 2360.0159
SER 2370.0191
ILE 2380.0241
ILE 2390.0276
GLY 2400.0341
VAL 2410.0195
LYS 2420.0185
LYS 2430.0160
GLY 2440.0185
THR 2450.0218
LEU 2460.0244
ALA 2470.0254
TRP 2480.0231
ALA 2490.0281
ARG 2500.0290
THR 2510.0305
GLY 2520.0167
PHE 2530.0164
SER 2540.0196
PRO 2550.0219
ALA 2560.0285
LYS 2570.0138
LYS 2580.0134
LEU 2590.0238
ASN 2600.0272
ALA 2610.0319
GLY 2620.0308
VAL 2630.0324
VAL 2640.0341
ARG 2650.0326
VAL 2660.0281
PHE 2670.0256
PHE 2680.0250
LEU 2690.0228
ASN 2700.0220
GLN 2710.0154
LYS 2720.0093
LYS 2730.0089
ALA 2740.0153
LYS 2750.0153
ASP 2760.0171
VAL 2770.0194
LEU 2780.0212
ARG 2790.0208
LYS 2800.0203
THR 2810.0209
SER 2820.0088
ARG 2830.0091
PRO 2840.0128
MET 2850.0139
VAL 2860.0122
ASP 2870.0075
LEU 2880.0085
THR 2890.0067
PHE 2900.0066
GLY 2910.0097
GLY 2920.0110

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.