CNRS Nantes University US2B US2B
home |  start a new run |  job status |  references&downloads |  examples |  help  

Should you encounter any unexpected behaviour,
please let us know.
elNémo has been relocated.
**Some cleaning from time to time**
Sorry for the inconvenience.


***  TLR_8_simulation  ***

<R2> analysis for 2608260327253941399

---  normal mode 8  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.1096
GLU 270.0028
PRO 280.0026
CYS 290.0023
VAL 300.0023
GLU 310.0026
VAL 320.0024
VAL 330.0027
PRO 340.0031
ASN 350.0030
ILE 360.0026
THR 370.0022
TYR 380.0021
GLN 390.0017
CYS 400.0017
MET 410.0014
GLU 420.0015
LEU 430.0019
ASN 440.0020
PHE 450.0019
TYR 460.0020
LYS 470.0018
ILE 480.0017
PRO 490.0021
ASP 500.0025
ASN 510.0028
LEU 520.0026
PRO 530.0029
PHE 540.0028
SER 550.0028
THR 560.0024
LYS 570.0022
ASN 580.0019
LEU 590.0016
ASP 600.0013
LEU 610.0012
SER 620.0009
PHE 630.0010
ASN 640.0014
PRO 650.0016
LEU 660.0014
ARG 670.0014
HIS 680.0012
LEU 690.0010
GLY 700.0011
SER 710.0010
TYR 720.0013
SER 730.0013
PHE 740.0015
PHE 750.0019
SER 760.0022
PHE 770.0021
PRO 780.0022
GLU 790.0024
LEU 800.0019
GLN 810.0019
VAL 820.0015
LEU 830.0012
ASP 840.0008
LEU 850.0006
SER 860.0004
ARG 870.0007
CYS 880.0009
GLU 890.0012
ILE 900.0010
GLN 910.0012
THR 920.0010
ILE 930.0006
GLU 940.0006
ASP 950.0004
GLY 960.0007
ALA 970.0007
TYR 980.0010
GLN 990.0012
SER 1000.0016
LEU 1010.0016
SER 1020.0019
HIS 1030.0021
LEU 1040.0017
SER 1050.0018
THR 1060.0014
LEU 1070.0009
ILE 1080.0006
LEU 1090.0004
THR 1100.0005
GLY 1110.0008
ASN 1120.0008
PRO 1130.0012
ILE 1140.0011
GLN 1150.0014
SER 1160.0012
LEU 1170.0008
ALA 1180.0007
LEU 1190.0007
GLY 1200.0005
ALA 1210.0004
PHE 1220.0007
SER 1230.0009
GLY 1240.0013
LEU 1250.0014
SER 1260.0018
SER 1270.0020
LEU 1280.0017
GLN 1290.0019
LYS 1300.0016
LEU 1310.0012
VAL 1320.0010
ALA 1330.0009
VAL 1340.0010
GLU 1350.0011
THR 1360.0010
ASN 1370.0014
LEU 1380.0015
ALA 1390.0019
SER 1400.0020
LEU 1410.0019
GLU 1420.0019
ASN 1430.0015
PHE 1440.0013
PRO 1450.0011
ILE 1460.0013
GLY 1470.0016
HIS 1480.0016
LEU 1490.0016
LYS 1500.0021
THR 1510.0022
LEU 1520.0020
LYS 1530.0022
GLU 1540.0019
LEU 1550.0016
ASN 1560.0015
VAL 1570.0015
ALA 1580.0016
HIS 1590.0016
ASN 1600.0017
LEU 1610.0021
ILE 1620.0022
GLN 1630.0027
SER 1640.0028
PHE 1650.0028
LYS 1660.0028
LEU 1670.0026
PRO 1680.0024
GLU 1690.0025
TYR 1700.0021
PHE 1710.0023
SER 1720.0027
ASN 1730.0024
LEU 1740.0023
THR 1750.0027
ASN 1760.0027
LEU 1770.0024
GLU 1780.0026
HIS 1790.0023
LEU 1800.0022
ASP 1810.0020
LEU 1820.0021
SER 1830.0021
SER 1840.0021
ASN 1850.0022
LYS 1860.0026
ILE 1870.0028
GLN 1880.0033
SER 1890.0035
ILE 1900.0035
TYR 1910.0038
CYS 1920.0039
THR 1930.0037
ASP 1940.0033
LEU 1950.0034
ARG 1960.0034
VAL 1970.0031
LEU 1980.0033
HIS 1990.0037
GLN 2000.0035
MET 2010.0034
PRO 2020.0038
LEU 2030.0037
LEU 2040.0033
ASN 2050.0033
LEU 2060.0030
SER 2070.0028
LEU 2080.0027
ASP 2090.0025
LEU 2100.0026
SER 2110.0025
LEU 2120.0025
ASN 2130.0027
PRO 2140.0031
MET 2150.0034
ASN 2160.0038
PHE 2170.0040
ILE 2180.0039
GLN 2190.0042
PRO 2200.0046
GLY 2210.0045
ALA 2220.0041
PHE 2230.0040
LYS 2240.0044
GLU 2250.0044
ILE 2260.0039
ARG 2270.0038
LEU 2280.0035
HIS 2290.0034
LYS 2300.0032
LEU 2310.0031
THR 2320.0029
LEU 2330.0030
ARG 2340.0028
ASN 2350.0029
ASN 2360.0031
PHE 2370.0035
ASP 2380.0036
SER 2390.0040
LEU 2400.0042
ASN 2410.0045
VAL 2420.0042
MET 2430.0040
LYS 2440.0044
THR 2450.0045
CYS 2460.0041
ILE 2470.0042
GLN 2480.0046
GLY 2490.0043
LEU 2500.0041
ALA 2510.0046
GLY 2520.0046
LEU 2530.0042
GLU 2540.0042
VAL 2550.0038
HIS 2560.0038
ARG 2570.0035
LEU 2580.0035
VAL 2590.0032
LEU 2600.0033
GLY 2610.0031
GLU 2620.0028
PHE 2630.0024
ARG 2640.0024
ASN 2650.0022
GLU 2660.0025
GLY 2670.0030
ASN 2680.0032
LEU 2690.0036
GLU 2700.0039
LYS 2710.0042
PHE 2720.0042
ASP 2730.0046
LYS 2740.0049
SER 2750.0049
ALA 2760.0044
LEU 2770.0044
GLU 2780.0049
GLY 2790.0047
LEU 2800.0045
CYS 2810.0049
ASN 2820.0049
LEU 2830.0045
THR 2840.0045
ILE 2850.0043
GLU 2860.0042
GLU 2870.0039
PHE 2880.0037
ARG 2890.0034
LEU 2900.0033
ALA 2910.0029
TYR 2920.0028
LEU 2930.0032
ASP 2940.0031
TYR 2950.0036
TYR 2960.0037
LEU 2970.0040
ASP 2980.0044
GLY 2990.0045
ILE 3000.0045
ILE 3010.0050
ASP 3020.0051
LEU 3030.0047
PHE 3040.0046
ASN 3050.0050
CYS 3060.0049
LEU 3070.0046
THR 3080.0049
ASN 3090.0049
VAL 3100.0045
SER 3110.0045
SER 3120.0040
PHE 3130.0039
SER 3140.0035
LEU 3150.0034
VAL 3160.0029
SER 3170.0028
VAL 3180.0032
THR 3190.0034
ILE 3200.0038
GLU 3210.0040
ARG 3220.0044
VAL 3230.0044
LYS 3240.0048
ASP 3250.0049
PHE 3260.0048
SER 3270.0051
TYR 3280.0053
ASN 3290.0054
PHE 3300.0050
GLY 3310.0051
TRP 3320.0046
GLN 3330.0046
HIS 3340.0041
LEU 3350.0040
GLU 3360.0035
LEU 3370.0034
VAL 3380.0029
ASN 3390.0027
CYS 3400.0030
LYS 3410.0032
PHE 3420.0037
GLY 3430.0039
GLN 3440.0041
PHE 3450.0041
PRO 3460.0043
THR 3470.0047
LEU 3480.0047
LYS 3490.0051
LEU 3500.0050
LYS 3510.0054
SER 3520.0051
LEU 3530.0047
LYS 3540.0046
ARG 3550.0042
LEU 3560.0040
THR 3570.0035
PHE 3580.0035
THR 3590.0030
SER 3600.0026
ASN 3610.0029
LYS 3620.0028
GLY 3630.0033
GLY 3640.0037
ASN 3650.0037
ALA 3660.0040
PHE 3670.0043
SER 3680.0047
GLU 3690.0049
VAL 3700.0049
ASP 3710.0052
LEU 3720.0049
PRO 3730.0053
SER 3740.0051
LEU 3750.0047
GLU 3760.0046
PHE 3770.0042
LEU 3780.0040
ASP 3790.0036
LEU 3800.0036
SER 3810.0032
ARG 3820.0028
ASN 3830.0030
GLY 3840.0030
LEU 3850.0035
SER 3860.0038
PHE 3870.0043
LYS 3880.0047
GLY 3890.0051
CYS 3900.0049
CYS 3910.0050
SER 3920.0053
GLN 3930.0054
SER 3940.0056
ASP 3950.0051
PHE 3960.0050
GLY 3970.0052
THR 3980.0051
ILE 3990.0053
SER 4000.0050
LEU 4010.0048
LYS 4020.0045
TYR 4030.0042
LEU 4040.0041
ASP 4050.0037
LEU 4060.0037
SER 4070.0032
PHE 4080.0028
ASN 4090.0032
GLY 4100.0033
VAL 4110.0038
ILE 4120.0042
THR 4130.0047
MET 4140.0050
SER 4150.0055
SER 4160.0057
ASN 4170.0056
PHE 4180.0054
LEU 4190.0059
GLY 4200.0058
LEU 4210.0053
GLU 4220.0055
GLN 4230.0052
LEU 4240.0048
GLU 4250.0045
HIS 4260.0041
LEU 4270.0042
ASP 4280.0037
PHE 4290.0037
GLN 4300.0033
HIS 4310.0030
SER 4320.0033
ASN 4330.0036
LEU 4340.0041
LYS 4350.0045
GLN 4360.0051
MET 4370.0051
SER 4380.0054
GLU 4390.0058
PHE 4400.0060
SER 4410.0059
VAL 4420.0055
PHE 4430.0054
LEU 4440.0059
SER 4450.0059
LEU 4460.0055
ARG 4470.0057
ASN 4480.0053
LEU 4490.0049
ILE 4500.0046
TYR 4510.0042
LEU 4520.0042
ASP 4530.0038
ILE 4540.0039
SER 4550.0035
HIS 4560.0032
THR 4570.0036
HIS 4580.0037
THR 4590.0043
ARG 4600.0046
VAL 4610.0051
ALA 4620.0055
PHE 4630.0059
ASN 4640.0062
GLY 4650.0062
ILE 4660.0056
PHE 4670.0056
ASN 4680.0061
GLY 4690.0060
LEU 4700.0056
SER 4710.0059
SER 4720.0055
LEU 4730.0051
GLU 4740.0048
VAL 4750.0043
LEU 4760.0044
LYS 4770.0039
MET 4780.0040
ALA 4790.0037
GLY 4800.0034
ASN 4810.0039
SER 4820.0043
PHE 4830.0050
GLN 4840.0053
GLU 4850.0054
ASN 4860.0051
PHE 4870.0056
LEU 4880.0056
PRO 4890.0061
ASP 4900.0064
ILE 4910.0060
PHE 4920.0059
THR 4930.0065
GLU 4940.0064
LEU 4950.0059
ARG 4960.0061
ASN 4970.0056
LEU 4980.0052
THR 4990.0049
PHE 5000.0045
LEU 5010.0046
ASP 5020.0041
LEU 5030.0043
SER 5040.0039
GLN 5050.0036
CYS 5060.0041
GLN 5070.0042
LEU 5080.0048
GLU 5090.0052
GLN 5100.0057
LEU 5110.0060
SER 5120.0065
PRO 5130.0068
THR 5140.0069
ALA 5150.0063
PHE 5160.0062
ASN 5170.0067
SER 5180.0066
LEU 5190.0061
SER 5200.0063
SER 5210.0057
LEU 5220.0054
GLN 5230.0050
VAL 5240.0046
LEU 5250.0048
ASN 5260.0043
MET 5270.0045
SER 5280.0041
HIS 5290.0038
ASN 5300.0042
ASN 5310.0046
PHE 5320.0051
PHE 5330.0055
SER 5340.0059
LEU 5350.0060
ASP 5360.0065
THR 5370.0066
PHE 5380.0070
PRO 5390.0066
TYR 5400.0064
LYS 5410.0069
CYS 5420.0069
LEU 5430.0063
ASN 5440.0064
SER 5450.0058
LEU 5460.0056
GLN 5470.0052
VAL 5480.0049
LEU 5490.0050
ASP 5500.0045
TYR 5510.0047
SER 5520.0043
LEU 5530.0040
ASN 5540.0044
HIS 5550.0048
ILE 5560.0053
MET 5570.0058
THR 5580.0063
SER 5590.0066
LYS 5600.0070
LYS 5610.0073
GLN 5620.0076
GLU 5630.0075
LEU 5640.0071
GLN 5650.0075
HIS 5660.0072
PHE 5670.0067
PRO 5680.0067
SER 5690.0067
SER 5700.0061
LEU 5710.0059
ALA 5720.0055
PHE 5730.0051
LEU 5740.0052
ASN 5750.0047
LEU 5760.0050
THR 5770.0046
GLN 5780.0043
ASN 5790.0047
ASP 5800.0050
PHE 5810.0056
ALA 5820.0060
CYS 5830.0064
THR 5840.0069
CYS 5850.0076
GLU 5860.0075
HIS 5870.0071
GLN 5880.0075
SER 5890.0076
PHE 5900.0070
LEU 5910.0068
GLN 5920.0073
TRP 5930.0071
ILE 5940.0065
LYS 5950.0069
ASP 5960.0072
GLN 5970.0067
ARG 5980.0062
GLN 5990.0061
LEU 6000.0058
LEU 6010.0055
VAL 6020.0049
GLU 6030.0047
VAL 6040.0053
GLU 6050.0051
ARG 6060.0046
MET 6070.0051
GLU 6080.0052
CYS 6090.0055
ALA 6100.0052
THR 6110.0056
PRO 6120.0060
SER 6130.0056
ASP 6140.0061
LYS 6150.0061
GLN 6160.0054
GLY 6170.0052
MET 6180.0057
PRO 6190.0057
VAL 6200.0061
LEU 6210.0064
SER 6220.0066
LEU 6230.0069
ASN 6240.0075
ILE 6250.0078
THR 6260.0083
CYS 6270.0084
GLU 10.1096
ALA 20.1054
ALA 30.1001
ALA 40.0922
LYS 50.0868
MET 60.0824
GLN 70.0764
ARG 80.0691
LEU 90.0649
VAL 100.0599
LEU 110.0534
LEU 120.0477
LEU 130.0435
ALA 140.0392
ILE 150.0318
SER 160.0282
LEU 170.0247
LEU 180.0215
LEU 190.0146
TYR 200.0117
GLN 210.0102
ASP 220.0083
LEU 230.0008
PRO 240.0063
VAL 250.0033
ARG 260.0058
SER 270.0054
GLU 280.0052
PHE 290.0051
GLU 300.0049
LEU 310.0045
ASP 320.0044
ARG 330.0040
ILE 340.0038
CYS 350.0035
GLY 360.0031
TYR 370.0033
GLY 380.0033
THR 390.0029
ALA 400.0030
ARG 410.0033
CYS 420.0036
ARG 430.0036
LYS 440.0037
LYS 450.0033
CYS 460.0029
ARG 470.0026
SER 480.0022
GLN 490.0020
GLU 500.0023
TYR 510.0024
ARG 520.0028
ILE 530.0028
GLY 540.0032
ARG 550.0037
CYS 560.0039
PRO 570.0044
ASN 580.0045
THR 590.0043
TYR 600.0039
ALA 610.0035
CYS 620.0033
CYS 630.0029
LEU 640.0026
ARG 650.0023
LYS 660.0019
TRP 670.0017
ASP 680.0016
GLU 690.0011
SER 700.0014
LEU 710.0016
LEU 720.0013
ASN 730.0012
ARG 740.0017
THR 750.0017
LYS 760.0015
PRO 770.0019
GLU 780.0020
ALA 790.0023
ALA 800.0025
ALA 810.0030
LYS 820.0029
LYS 830.0031
GLU 840.0031
MET 850.0032
ASN 860.0033
LEU 870.0032
SER 880.0034
VAL 890.0034
GLY 900.0036
LEU 910.0036
GLY 920.0039
GLY 930.0041
GLY 940.0040
SER 950.0038
ASN 960.0036
LEU 970.0033
SER 980.0033
VAL 990.0030
GLY 1000.0030
LEU 1010.0027
GLY 1020.0026
GLU 1030.0025
ILE 1040.0023
GLY 1050.0023
GLY 1060.0021
GLY 1070.0022
SER 1080.0023
LYS 1090.0025
LEU 1100.0026
LEU 1110.0028
ASP 1120.0029
ILE 1130.0030
ASN 1140.0031
LEU 1150.0033
GLY 1160.0034
ARG 1170.0037
GLY 1180.0037
GLY 1190.0039
GLY 1200.0039
SER 1210.0037
MET 1220.0036
VAL 1230.0034
ASP 1240.0035
LEU 1250.0034
THR 1260.0035
PHE 1270.0034
GLY 1280.0036
GLY 1290.0037
VAL 1300.0036
GLY 1310.0037
GLY 1320.0035
GLY 1330.0036
SER 1340.0033
THR 1350.0034
PHE 1360.0032
THR 1370.0031
PHE 1380.0031
PHE 1390.0030
PRO 1400.0031
LEU 1410.0030
VAL 1420.0029
ILE 1430.0029
GLY 1440.0029
GLY 1450.0030
GLY 1460.0032
SER 1470.0031
ASP 1480.0032
ALA 1490.0030
MET 1500.0030
TYR 1510.0029
LEU 1520.0029
GLY 1530.0029
PHE 1540.0030
ALA 1550.0031
ALA 1560.0030
GLY 1570.0032
GLY 1580.0033
GLY 1590.0037
SER 1600.0039
ALA 1610.0040
GLY 1620.0042
GLY 1630.0042
GLU 1640.0040
ASN 1650.0037
HIS 1660.0036
VAL 1670.0034
ALA 1680.0035
PHE 1690.0034
GLY 1700.0036
PRO 1710.0042
GLY 1720.0041
PRO 1730.0038
GLY 1740.0034
VAL 1750.0032
ASP 1760.0034
LEU 1770.0033
THR 1780.0036
PHE 1790.0036
GLY 1800.0040
GLY 1810.0040
VAL 1820.0038
GLN 1830.0036
PHE 1840.0034
ALA 1850.0033
MET 1860.0033
VAL 1870.0029
ASN 1880.0033
ASN 1890.0040
GLY 1900.0052
PRO 1910.0118
GLY 1920.0193
PRO 1930.0263
GLY 1940.0312
GLU 1950.0266
SER 1960.0253
PHE 1970.0266
THR 1980.0265
ALA 1990.0260
GLN 2000.0311
PRO 2010.0317
ALA 2020.0391
ASP 2030.0427
MET 2040.0424
GLN 2050.0496
ALA 2060.0553
GLY 2070.0617
ILE 2080.0507
LYS 2090.0560
GLY 2100.0502
PRO 2110.0409
GLY 2120.0432
PRO 2130.0337
GLY 2140.0207
GLY 2150.0213
SER 2160.0133
ILE 2170.0101
GLN 2180.0086
VAL 2190.0043
ILE 2200.0037
ASN 2210.0031
GLY 2220.0031
SER 2230.0030
THR 2240.0030
ILE 2250.0031
GLY 2260.0030
THR 2270.0029
GLY 2280.0024
SER 2290.0024
LYS 2300.0022
LYS 2310.0026
THR 2320.0023
ILE 2330.0025
LEU 2340.0023
ILE 2350.0024
TYR 2360.0024
SER 2370.0022
ILE 2380.0025
ILE 2390.0025
GLY 2400.0029
VAL 2410.0033
LYS 2420.0036
LYS 2430.0041
GLY 2440.0043
THR 2450.0040
LEU 2460.0034
ALA 2470.0030
TRP 2480.0026
ALA 2490.0023
ARG 2500.0020
THR 2510.0017
GLY 2520.0015
PHE 2530.0014
SER 2540.0014
PRO 2550.0015
ALA 2560.0018
LYS 2570.0022
LYS 2580.0025
LEU 2590.0029
ASN 2600.0035
ALA 2610.0036
GLY 2620.0030
VAL 2630.0028
VAL 2640.0026
ARG 2650.0022
VAL 2660.0022
PHE 2670.0017
PHE 2680.0018
LEU 2690.0014
ASN 2700.0017
GLN 2710.0019
LYS 2720.0018
LYS 2730.0013
ALA 2740.0013
LYS 2750.0017
ASP 2760.0015
VAL 2770.0011
LEU 2780.0012
ARG 2790.0017
LYS 2800.0017
THR 2810.0017
SER 2820.0020
ARG 2830.0019
PRO 2840.0024
MET 2850.0023
VAL 2860.0029
ASP 2870.0039
LEU 2880.0041
THR 2890.0051
PHE 2900.0059
GLY 2910.0071
GLY 2920.0074

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.