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***  TLR_8_simulation  ***

<R2> analysis for 2608260327253941399

---  normal mode 80  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0660
GLU 270.0110
PRO 280.0102
CYS 290.0065
VAL 300.0064
GLU 310.0057
VAL 320.0024
VAL 330.0026
PRO 340.0066
ASN 350.0092
ILE 360.0072
THR 370.0038
TYR 380.0025
GLN 390.0014
CYS 400.0018
MET 410.0035
GLU 420.0050
LEU 430.0049
ASN 440.0037
PHE 450.0026
TYR 460.0032
LYS 470.0046
ILE 480.0059
PRO 490.0066
ASP 500.0107
ASN 510.0113
LEU 520.0090
PRO 530.0104
PHE 540.0124
SER 550.0111
THR 560.0082
LYS 570.0087
ASN 580.0066
LEU 590.0052
ASP 600.0039
LEU 610.0030
SER 620.0046
PHE 630.0049
ASN 640.0027
PRO 650.0031
LEU 660.0043
ARG 670.0060
HIS 680.0067
LEU 690.0074
GLY 700.0080
SER 710.0092
TYR 720.0099
SER 730.0073
PHE 740.0083
PHE 750.0103
SER 760.0097
PHE 770.0095
PRO 780.0117
GLU 790.0105
LEU 800.0091
GLN 810.0095
VAL 820.0079
LEU 830.0071
ASP 840.0065
LEU 850.0062
SER 860.0067
ARG 870.0059
CYS 880.0055
GLU 890.0064
ILE 900.0069
GLN 910.0079
THR 920.0081
ILE 930.0083
GLU 940.0087
ASP 950.0097
GLY 960.0094
ALA 970.0082
TYR 980.0086
GLN 990.0098
SER 1000.0095
LEU 1010.0091
SER 1020.0096
HIS 1030.0089
LEU 1040.0081
SER 1050.0086
THR 1060.0078
LEU 1070.0070
ILE 1080.0067
LEU 1090.0064
THR 1100.0065
GLY 1110.0062
ASN 1120.0065
PRO 1130.0070
ILE 1140.0072
GLN 1150.0077
SER 1160.0078
LEU 1170.0078
ALA 1180.0080
LEU 1190.0080
GLY 1200.0078
ALA 1210.0077
PHE 1220.0076
SER 1230.0079
GLY 1240.0074
LEU 1250.0070
SER 1260.0073
SER 1270.0066
LEU 1280.0065
GLN 1290.0066
LYS 1300.0064
LEU 1310.0062
VAL 1320.0047
ALA 1330.0038
VAL 1340.0041
GLU 1350.0036
THR 1360.0029
ASN 1370.0024
LEU 1380.0015
ALA 1390.0027
SER 1400.0029
LEU 1410.0025
GLU 1420.0029
ASN 1430.0016
PHE 1440.0016
PRO 1450.0030
ILE 1460.0035
GLY 1470.0023
HIS 1480.0033
LEU 1490.0040
LYS 1500.0033
THR 1510.0045
LEU 1520.0039
LYS 1530.0042
GLU 1540.0037
LEU 1550.0030
ASN 1560.0029
VAL 1570.0014
ALA 1580.0025
HIS 1590.0029
ASN 1600.0023
LEU 1610.0029
ILE 1620.0054
GLN 1630.0074
SER 1640.0076
PHE 1650.0067
LYS 1660.0075
LEU 1670.0055
PRO 1680.0058
GLU 1690.0070
TYR 1700.0057
PHE 1710.0044
SER 1720.0055
ASN 1730.0053
LEU 1740.0033
THR 1750.0038
ASN 1760.0032
LEU 1770.0020
GLU 1780.0018
HIS 1790.0014
LEU 1800.0006
ASP 1810.0015
LEU 1820.0031
SER 1830.0041
SER 1840.0048
ASN 1850.0049
LYS 1860.0062
ILE 1870.0082
GLN 1880.0105
SER 1890.0112
ILE 1900.0104
TYR 1910.0119
CYS 1920.0113
THR 1930.0119
ASP 1940.0106
LEU 1950.0090
ARG 1960.0099
VAL 1970.0085
LEU 1980.0067
HIS 1990.0080
GLN 2000.0086
MET 2010.0066
PRO 2020.0055
LEU 2030.0046
LEU 2040.0033
ASN 2050.0014
LEU 2060.0009
SER 2070.0018
LEU 2080.0027
ASP 2090.0037
LEU 2100.0048
SER 2110.0056
LEU 2120.0072
ASN 2130.0075
PRO 2140.0096
MET 2150.0095
ASN 2160.0114
PHE 2170.0125
ILE 2180.0111
GLN 2190.0117
PRO 2200.0112
GLY 2210.0103
ALA 2220.0101
PHE 2230.0080
LYS 2240.0078
GLU 2250.0063
ILE 2260.0057
ARG 2270.0030
LEU 2280.0025
HIS 2290.0017
LYS 2300.0027
LEU 2310.0038
THR 2320.0043
LEU 2330.0053
ARG 2340.0059
ASN 2350.0069
ASN 2360.0070
PHE 2370.0096
ASP 2380.0097
SER 2390.0098
LEU 2400.0099
ASN 2410.0101
VAL 2420.0111
MET 2430.0107
LYS 2440.0105
THR 2450.0104
CYS 2460.0102
ILE 2470.0100
GLN 2480.0101
GLY 2490.0100
LEU 2500.0088
ALA 2510.0083
GLY 2520.0065
LEU 2530.0057
GLU 2540.0041
VAL 2550.0039
HIS 2560.0032
ARG 2570.0035
LEU 2580.0041
VAL 2590.0044
LEU 2600.0051
GLY 2610.0057
GLU 2620.0059
PHE 2630.0059
ARG 2640.0059
ASN 2650.0059
GLU 2660.0058
GLY 2670.0064
ASN 2680.0068
LEU 2690.0076
GLU 2700.0076
LYS 2710.0083
PHE 2720.0083
ASP 2730.0085
LYS 2740.0088
SER 2750.0090
ALA 2760.0088
LEU 2770.0084
GLU 2780.0089
GLY 2790.0086
LEU 2800.0076
CYS 2810.0078
ASN 2820.0076
LEU 2830.0064
THR 2840.0050
ILE 2850.0051
GLU 2860.0044
GLU 2870.0040
PHE 2880.0045
ARG 2890.0044
LEU 2900.0050
ALA 2910.0046
TYR 2920.0052
LEU 2930.0051
ASP 2940.0038
TYR 2950.0043
TYR 2960.0043
LEU 2970.0045
ASP 2980.0043
GLY 2990.0044
ILE 3000.0048
ILE 3010.0051
ASP 3020.0072
LEU 3030.0070
PHE 3040.0067
ASN 3050.0071
CYS 3060.0072
LEU 3070.0060
THR 3080.0061
ASN 3090.0055
VAL 3100.0052
SER 3110.0049
SER 3120.0041
PHE 3130.0043
SER 3140.0040
LEU 3150.0043
VAL 3160.0042
SER 3170.0043
VAL 3180.0038
THR 3190.0031
ILE 3200.0031
GLU 3210.0027
ARG 3220.0029
VAL 3230.0027
LYS 3240.0025
ASP 3250.0037
PHE 3260.0033
SER 3270.0033
TYR 3280.0038
ASN 3290.0043
PHE 3300.0045
GLY 3310.0050
TRP 3320.0039
GLN 3330.0032
HIS 3340.0027
LEU 3350.0029
GLU 3360.0029
LEU 3370.0033
VAL 3380.0042
ASN 3390.0050
CYS 3400.0042
LYS 3410.0044
PHE 3420.0056
GLY 3430.0064
GLN 3440.0057
PHE 3450.0047
PRO 3460.0035
THR 3470.0030
LEU 3480.0026
LYS 3490.0029
LEU 3500.0031
LYS 3510.0038
SER 3520.0024
LEU 3530.0020
LYS 3540.0013
ARG 3550.0019
LEU 3560.0023
THR 3570.0031
PHE 3580.0035
THR 3590.0043
SER 3600.0053
ASN 3610.0053
LYS 3620.0082
GLY 3630.0099
GLY 3640.0103
ASN 3650.0087
ALA 3660.0104
PHE 3670.0077
SER 3680.0077
GLU 3690.0073
VAL 3700.0060
ASP 3710.0060
LEU 3720.0045
PRO 3730.0052
SER 3740.0050
LEU 3750.0044
GLU 3760.0045
PHE 3770.0037
LEU 3780.0038
ASP 3790.0039
LEU 3800.0043
SER 3810.0045
ARG 3820.0054
ASN 3830.0064
GLY 3840.0081
LEU 3850.0075
SER 3860.0096
PHE 3870.0083
LYS 3880.0093
GLY 3890.0093
CYS 3900.0084
CYS 3910.0085
SER 3920.0082
GLN 3930.0086
SER 3940.0092
ASP 3950.0079
PHE 3960.0072
GLY 3970.0074
THR 3980.0074
ILE 3990.0081
SER 4000.0079
LEU 4010.0065
LYS 4020.0063
TYR 4030.0055
LEU 4040.0051
ASP 4050.0048
LEU 4060.0049
SER 4070.0050
PHE 4080.0061
ASN 4090.0062
GLY 4100.0075
VAL 4110.0079
ILE 4120.0077
THR 4130.0081
MET 4140.0079
SER 4150.0087
SER 4160.0088
ASN 4170.0077
PHE 4180.0077
LEU 4190.0089
GLY 4200.0093
LEU 4210.0083
GLU 4220.0079
GLN 4230.0081
LEU 4240.0067
GLU 4250.0071
HIS 4260.0062
LEU 4270.0058
ASP 4280.0057
PHE 4290.0056
GLN 4300.0058
HIS 4310.0059
SER 4320.0072
ASN 4330.0074
LEU 4340.0067
LYS 4350.0072
GLN 4360.0072
MET 4370.0072
SER 4380.0073
GLU 4390.0076
PHE 4400.0077
SER 4410.0078
VAL 4420.0070
PHE 4430.0068
LEU 4440.0072
SER 4450.0076
LEU 4460.0072
ARG 4470.0071
ASN 4480.0072
LEU 4490.0062
ILE 4500.0068
TYR 4510.0062
LEU 4520.0063
ASP 4530.0063
ILE 4540.0062
SER 4550.0066
HIS 4560.0068
THR 4570.0070
HIS 4580.0071
THR 4590.0068
ARG 4600.0068
VAL 4610.0066
ALA 4620.0070
PHE 4630.0073
ASN 4640.0074
GLY 4650.0078
ILE 4660.0074
PHE 4670.0064
ASN 4680.0068
GLY 4690.0070
LEU 4700.0066
SER 4710.0068
SER 4720.0061
LEU 4730.0057
GLU 4740.0058
VAL 4750.0058
LEU 4760.0058
LYS 4770.0062
MET 4780.0062
ALA 4790.0064
GLY 4800.0066
ASN 4810.0064
SER 4820.0060
PHE 4830.0059
GLN 4840.0067
GLU 4850.0060
ASN 4860.0050
PHE 4870.0047
LEU 4880.0046
PRO 4890.0056
ASP 4900.0059
ILE 4910.0061
PHE 4920.0053
THR 4930.0057
GLU 4940.0060
LEU 4950.0054
ARG 4960.0053
ASN 4970.0046
LEU 4980.0044
THR 4990.0042
PHE 5000.0045
LEU 5010.0044
ASP 5020.0048
LEU 5030.0047
SER 5040.0045
GLN 5050.0045
CYS 5060.0047
GLN 5070.0040
LEU 5080.0034
GLU 5090.0031
GLN 5100.0035
LEU 5110.0031
SER 5120.0038
PRO 5130.0036
THR 5140.0035
ALA 5150.0031
PHE 5160.0025
ASN 5170.0027
SER 5180.0028
LEU 5190.0025
SER 5200.0021
SER 5210.0027
LEU 5220.0029
GLN 5230.0040
VAL 5240.0043
LEU 5250.0033
ASN 5260.0036
MET 5270.0032
SER 5280.0032
HIS 5290.0030
ASN 5300.0030
ASN 5310.0030
PHE 5320.0039
PHE 5330.0039
SER 5340.0045
LEU 5350.0052
ASP 5360.0053
THR 5370.0040
PHE 5380.0039
PRO 5390.0033
TYR 5400.0041
LYS 5410.0048
CYS 5420.0030
LEU 5430.0032
ASN 5440.0042
SER 5450.0044
LEU 5460.0043
GLN 5470.0060
VAL 5480.0057
LEU 5490.0051
ASP 5500.0049
TYR 5510.0045
SER 5520.0051
LEU 5530.0047
ASN 5540.0048
HIS 5550.0044
ILE 5560.0047
MET 5570.0062
THR 5580.0063
SER 5590.0064
LYS 5600.0068
LYS 5610.0070
GLN 5620.0066
GLU 5630.0063
LEU 5640.0054
GLN 5650.0049
HIS 5660.0054
PHE 5670.0056
PRO 5680.0058
SER 5690.0065
SER 5700.0063
LEU 5710.0062
ALA 5720.0069
PHE 5730.0064
LEU 5740.0061
ASN 5750.0056
LEU 5760.0053
THR 5770.0050
GLN 5780.0051
ASN 5790.0054
ASP 5800.0051
PHE 5810.0051
ALA 5820.0078
CYS 5830.0067
THR 5840.0108
CYS 5850.0145
GLU 5860.0159
HIS 5870.0102
GLN 5880.0096
SER 5890.0098
PHE 5900.0079
LEU 5910.0059
GLN 5920.0073
TRP 5930.0071
ILE 5940.0050
LYS 5950.0048
ASP 5960.0061
GLN 5970.0060
ARG 5980.0046
GLN 5990.0046
LEU 6000.0053
LEU 6010.0045
VAL 6020.0045
GLU 6030.0039
VAL 6040.0039
GLU 6050.0039
ARG 6060.0039
MET 6070.0043
GLU 6080.0040
CYS 6090.0043
ALA 6100.0051
THR 6110.0060
PRO 6120.0064
SER 6130.0045
ASP 6140.0056
LYS 6150.0055
GLN 6160.0043
GLY 6170.0045
MET 6180.0047
PRO 6190.0044
VAL 6200.0048
LEU 6210.0054
SER 6220.0078
LEU 6230.0078
ASN 6240.0107
ILE 6250.0117
THR 6260.0159
CYS 6270.0272
GLU 10.0077
ALA 20.0072
ALA 30.0074
ALA 40.0056
LYS 50.0015
MET 60.0028
GLN 70.0049
ARG 80.0061
LEU 90.0052
VAL 100.0050
LEU 110.0047
LEU 120.0049
LEU 130.0036
ALA 140.0021
ILE 150.0027
SER 160.0032
LEU 170.0023
LEU 180.0040
LEU 190.0056
TYR 200.0060
GLN 210.0060
ASP 220.0078
LEU 230.0076
PRO 240.0062
VAL 250.0048
ARG 260.0164
SER 270.0113
GLU 280.0151
PHE 290.0150
GLU 300.0085
LEU 310.0072
ASP 320.0075
ARG 330.0062
ILE 340.0052
CYS 350.0057
GLY 360.0025
TYR 370.0034
GLY 380.0050
THR 390.0038
ALA 400.0049
ARG 410.0060
CYS 420.0076
ARG 430.0074
LYS 440.0091
LYS 450.0095
CYS 460.0078
ARG 470.0068
SER 480.0074
GLN 490.0065
GLU 500.0072
TYR 510.0100
ARG 520.0113
ILE 530.0115
GLY 540.0129
ARG 550.0136
CYS 560.0127
PRO 570.0143
ASN 580.0130
THR 590.0143
TYR 600.0119
ALA 610.0097
CYS 620.0089
CYS 630.0079
LEU 640.0069
ARG 650.0059
LYS 660.0074
TRP 670.0059
ASP 680.0043
GLU 690.0035
SER 700.0022
LEU 710.0030
LEU 720.0020
ASN 730.0023
ARG 740.0034
THR 750.0040
LYS 760.0084
PRO 770.0151
GLU 780.0138
ALA 790.0229
ALA 800.0275
ALA 810.0238
LYS 820.0232
LYS 830.0149
GLU 840.0127
MET 850.0081
ASN 860.0119
LEU 870.0116
SER 880.0115
VAL 890.0103
GLY 900.0113
LEU 910.0139
GLY 920.0367
GLY 930.0640
GLY 940.0660
SER 950.0433
ASN 960.0148
LEU 970.0100
SER 980.0110
VAL 990.0083
GLY 1000.0102
LEU 1010.0141
GLY 1020.0197
GLU 1030.0183
ILE 1040.0202
GLY 1050.0179
GLY 1060.0322
GLY 1070.0255
SER 1080.0221
LYS 1090.0142
LEU 1100.0101
LEU 1110.0070
ASP 1120.0063
ILE 1130.0056
ASN 1140.0068
LEU 1150.0052
GLY 1160.0080
ARG 1170.0090
GLY 1180.0084
GLY 1190.0065
GLY 1200.0058
SER 1210.0080
MET 1220.0088
VAL 1230.0072
ASP 1240.0080
LEU 1250.0067
THR 1260.0095
PHE 1270.0093
GLY 1280.0111
GLY 1290.0120
VAL 1300.0123
GLY 1310.0171
GLY 1320.0175
GLY 1330.0171
SER 1340.0173
THR 1350.0170
PHE 1360.0133
THR 1370.0120
PHE 1380.0100
PHE 1390.0091
PRO 1400.0071
LEU 1410.0071
VAL 1420.0130
ILE 1430.0159
GLY 1440.0227
GLY 1450.0289
GLY 1460.0139
SER 1470.0145
ASP 1480.0152
ALA 1490.0139
MET 1500.0122
TYR 1510.0096
LEU 1520.0106
GLY 1530.0112
PHE 1540.0141
ALA 1550.0159
ALA 1560.0162
GLY 1570.0170
GLY 1580.0165
GLY 1590.0193
SER 1600.0212
ALA 1610.0241
GLY 1620.0224
GLY 1630.0175
GLU 1640.0177
ASN 1650.0132
HIS 1660.0116
VAL 1670.0089
ALA 1680.0106
PHE 1690.0105
GLY 1700.0130
PRO 1710.0157
GLY 1720.0135
PRO 1730.0201
GLY 1740.0114
VAL 1750.0062
ASP 1760.0065
LEU 1770.0047
THR 1780.0097
PHE 1790.0132
GLY 1800.0182
GLY 1810.0221
VAL 1820.0160
GLN 1830.0079
PHE 1840.0050
ALA 1850.0069
MET 1860.0167
VAL 1870.0231
ASN 1880.0167
ASN 1890.0117
GLY 1900.0179
PRO 1910.0140
GLY 1920.0081
PRO 1930.0072
GLY 1940.0054
GLU 1950.0078
SER 1960.0070
PHE 1970.0151
THR 1980.0181
ALA 1990.0204
GLN 2000.0077
PRO 2010.0164
ALA 2020.0159
ASP 2030.0057
MET 2040.0134
GLN 2050.0122
ALA 2060.0395
GLY 2070.0332
ILE 2080.0196
LYS 2090.0113
GLY 2100.0223
PRO 2110.0271
GLY 2120.0180
PRO 2130.0161
GLY 2140.0152
GLY 2150.0193
SER 2160.0165
ILE 2170.0215
GLN 2180.0181
VAL 2190.0249
ILE 2200.0250
ASN 2210.0173
GLY 2220.0178
SER 2230.0173
THR 2240.0276
ILE 2250.0243
GLY 2260.0107
THR 2270.0242
GLY 2280.0369
SER 2290.0458
LYS 2300.0256
LYS 2310.0023
THR 2320.0136
ILE 2330.0201
LEU 2340.0340
ILE 2350.0428
TYR 2360.0439
SER 2370.0403
ILE 2380.0328
ILE 2390.0136
GLY 2400.0222
VAL 2410.0264
LYS 2420.0222
LYS 2430.0255
GLY 2440.0331
THR 2450.0326
LEU 2460.0451
ALA 2470.0287
TRP 2480.0167
ALA 2490.0159
ARG 2500.0234
THR 2510.0518
GLY 2520.0385
PHE 2530.0314
SER 2540.0202
PRO 2550.0199
ALA 2560.0259
LYS 2570.0173
LYS 2580.0109
LEU 2590.0276
ASN 2600.0243
ALA 2610.0353
GLY 2620.0369
VAL 2630.0233
VAL 2640.0250
ARG 2650.0202
VAL 2660.0142
PHE 2670.0184
PHE 2680.0200
LEU 2690.0285
ASN 2700.0337
GLN 2710.0263
LYS 2720.0149
LYS 2730.0227
ALA 2740.0304
LYS 2750.0234
ASP 2760.0288
VAL 2770.0335
LEU 2780.0319
ARG 2790.0269
LYS 2800.0291
THR 2810.0338
SER 2820.0165
ARG 2830.0166
PRO 2840.0177
MET 2850.0176
VAL 2860.0155
ASP 2870.0119
LEU 2880.0157
THR 2890.0153
PHE 2900.0125
GLY 2910.0200
GLY 2920.0184

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elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.