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***  TLR_8_simulation  ***

<R2> analysis for 2608260327253941399

---  normal mode 84  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0669
GLU 270.0107
PRO 280.0126
CYS 290.0113
VAL 300.0126
GLU 310.0112
VAL 320.0120
VAL 330.0090
PRO 340.0081
ASN 350.0050
ILE 360.0043
THR 370.0068
TYR 380.0075
GLN 390.0095
CYS 400.0087
MET 410.0107
GLU 420.0121
LEU 430.0115
ASN 440.0116
PHE 450.0093
TYR 460.0093
LYS 470.0078
ILE 480.0062
PRO 490.0059
ASP 500.0039
ASN 510.0062
LEU 520.0052
PRO 530.0040
PHE 540.0027
SER 550.0018
THR 560.0025
LYS 570.0042
ASN 580.0055
LEU 590.0056
ASP 600.0073
LEU 610.0074
SER 620.0085
PHE 630.0099
ASN 640.0094
PRO 650.0101
LEU 660.0089
ARG 670.0095
HIS 680.0086
LEU 690.0072
GLY 700.0068
SER 710.0058
TYR 720.0047
SER 730.0049
PHE 740.0041
PHE 750.0032
SER 760.0026
PHE 770.0031
PRO 780.0043
GLU 790.0045
LEU 800.0050
GLN 810.0066
VAL 820.0063
LEU 830.0062
ASP 840.0065
LEU 850.0068
SER 860.0073
ARG 870.0064
CYS 880.0072
GLU 890.0081
ILE 900.0084
GLN 910.0093
THR 920.0082
ILE 930.0069
GLU 940.0069
ASP 950.0065
GLY 960.0054
ALA 970.0055
TYR 980.0056
GLN 990.0055
SER 1000.0052
LEU 1010.0056
SER 1020.0058
HIS 1030.0061
LEU 1040.0061
SER 1050.0069
THR 1060.0069
LEU 1070.0055
ILE 1080.0056
LEU 1090.0054
THR 1100.0058
GLY 1110.0059
ASN 1120.0055
PRO 1130.0059
ILE 1140.0068
GLN 1150.0079
SER 1160.0088
LEU 1170.0048
ALA 1180.0055
LEU 1190.0052
GLY 1200.0056
ALA 1210.0052
PHE 1220.0047
SER 1230.0046
GLY 1240.0055
LEU 1250.0056
SER 1260.0054
SER 1270.0049
LEU 1280.0045
GLN 1290.0055
LYS 1300.0061
LEU 1310.0055
VAL 1320.0058
ALA 1330.0062
VAL 1340.0080
GLU 1350.0091
THR 1360.0077
ASN 1370.0103
LEU 1380.0089
ALA 1390.0086
SER 1400.0078
LEU 1410.0072
GLU 1420.0082
ASN 1430.0089
PHE 1440.0069
PRO 1450.0054
ILE 1460.0032
GLY 1470.0028
HIS 1480.0017
LEU 1490.0025
LYS 1500.0015
THR 1510.0029
LEU 1520.0019
LYS 1530.0032
GLU 1540.0043
LEU 1550.0046
ASN 1560.0064
VAL 1570.0063
ALA 1580.0074
HIS 1590.0099
ASN 1600.0102
LEU 1610.0112
ILE 1620.0099
GLN 1630.0098
SER 1640.0094
PHE 1650.0076
LYS 1660.0097
LEU 1670.0079
PRO 1680.0093
GLU 1690.0097
TYR 1700.0083
PHE 1710.0064
SER 1720.0064
ASN 1730.0049
LEU 1740.0037
THR 1750.0031
ASN 1760.0015
LEU 1770.0032
GLU 1780.0022
HIS 1790.0028
LEU 1800.0038
ASP 1810.0049
LEU 1820.0055
SER 1830.0056
SER 1840.0074
ASN 1850.0079
LYS 1860.0081
ILE 1870.0063
GLN 1880.0053
SER 1890.0065
ILE 1900.0075
TYR 1910.0102
CYS 1920.0113
THR 1930.0124
ASP 1940.0107
LEU 1950.0103
ARG 1960.0123
VAL 1970.0102
LEU 1980.0088
HIS 1990.0101
GLN 2000.0105
MET 2010.0087
PRO 2020.0082
LEU 2030.0070
LEU 2040.0062
ASN 2050.0047
LEU 2060.0047
SER 2070.0054
LEU 2080.0051
ASP 2090.0050
LEU 2100.0042
SER 2110.0048
LEU 2120.0057
ASN 2130.0043
PRO 2140.0034
MET 2150.0031
ASN 2160.0042
PHE 2170.0054
ILE 2180.0066
GLN 2190.0090
PRO 2200.0104
GLY 2210.0119
ALA 2220.0099
PHE 2230.0095
LYS 2240.0112
GLU 2250.0122
ILE 2260.0108
ARG 2270.0082
LEU 2280.0078
HIS 2290.0080
LYS 2300.0071
LEU 2310.0063
THR 2320.0073
LEU 2330.0059
ARG 2340.0088
ASN 2350.0101
ASN 2360.0075
PHE 2370.0113
ASP 2380.0157
SER 2390.0165
LEU 2400.0154
ASN 2410.0156
VAL 2420.0112
MET 2430.0094
LYS 2440.0104
THR 2450.0100
CYS 2460.0066
ILE 2470.0060
GLN 2480.0084
GLY 2490.0070
LEU 2500.0069
ALA 2510.0097
GLY 2520.0096
LEU 2530.0084
GLU 2540.0090
VAL 2550.0083
HIS 2560.0093
ARG 2570.0094
LEU 2580.0067
VAL 2590.0079
LEU 2600.0071
GLY 2610.0096
GLU 2620.0133
PHE 2630.0167
ARG 2640.0226
ASN 2650.0207
GLU 2660.0161
GLY 2670.0209
ASN 2680.0190
LEU 2690.0175
GLU 2700.0213
LYS 2710.0195
PHE 2720.0150
ASP 2730.0145
LYS 2740.0117
SER 2750.0119
ALA 2760.0097
LEU 2770.0059
GLU 2780.0077
GLY 2790.0063
LEU 2800.0047
CYS 2810.0078
ASN 2820.0085
LEU 2830.0076
THR 2840.0087
ILE 2850.0078
GLU 2860.0097
GLU 2870.0095
PHE 2880.0076
ARG 2890.0086
LEU 2900.0083
ALA 2910.0111
TYR 2920.0166
LEU 2930.0158
ASP 2940.0198
TYR 2950.0188
TYR 2960.0186
LEU 2970.0089
ASP 2980.0073
GLY 2990.0041
ILE 3000.0030
ILE 3010.0019
ASP 3020.0030
LEU 3030.0033
PHE 3040.0029
ASN 3050.0032
CYS 3060.0035
LEU 3070.0056
THR 3080.0067
ASN 3090.0086
VAL 3100.0088
SER 3110.0113
SER 3120.0109
PHE 3130.0093
SER 3140.0100
LEU 3150.0095
VAL 3160.0114
SER 3170.0136
VAL 3180.0105
THR 3190.0100
ILE 3200.0071
GLU 3210.0066
ARG 3220.0056
VAL 3230.0069
LYS 3240.0077
ASP 3250.0066
PHE 3260.0084
SER 3270.0093
TYR 3280.0082
ASN 3290.0092
PHE 3300.0085
GLY 3310.0094
TRP 3320.0096
GLN 3330.0100
HIS 3340.0100
LEU 3350.0099
GLU 3360.0099
LEU 3370.0093
VAL 3380.0105
ASN 3390.0106
CYS 3400.0085
LYS 3410.0079
PHE 3420.0079
GLY 3430.0077
GLN 3440.0088
PHE 3450.0097
PRO 3460.0090
THR 3470.0108
LEU 3480.0104
LYS 3490.0104
LEU 3500.0100
LYS 3510.0100
SER 3520.0091
LEU 3530.0089
LYS 3540.0080
ARG 3550.0081
LEU 3560.0089
THR 3570.0091
PHE 3580.0090
THR 3590.0091
SER 3600.0089
ASN 3610.0086
LYS 3620.0078
GLY 3630.0079
GLY 3640.0091
ASN 3650.0096
ALA 3660.0113
PHE 3670.0115
SER 3680.0114
GLU 3690.0108
VAL 3700.0102
ASP 3710.0097
LEU 3720.0093
PRO 3730.0081
SER 3740.0073
LEU 3750.0074
GLU 3760.0062
PHE 3770.0065
LEU 3780.0069
ASP 3790.0071
LEU 3800.0075
SER 3810.0077
ARG 3820.0077
ASN 3830.0084
GLY 3840.0092
LEU 3850.0087
SER 3860.0090
PHE 3870.0096
LYS 3880.0090
GLY 3890.0078
CYS 3900.0075
CYS 3910.0067
SER 3920.0066
GLN 3930.0061
SER 3940.0075
ASP 3950.0087
PHE 3960.0085
GLY 3970.0086
THR 3980.0068
ILE 3990.0046
SER 4000.0044
LEU 4010.0060
LYS 4020.0058
TYR 4030.0064
LEU 4040.0068
ASP 4050.0075
LEU 4060.0078
SER 4070.0073
PHE 4080.0084
ASN 4090.0083
GLY 4100.0093
VAL 4110.0092
ILE 4120.0087
THR 4130.0083
MET 4140.0076
SER 4150.0069
SER 4160.0061
ASN 4170.0061
PHE 4180.0056
LEU 4190.0035
GLY 4200.0032
LEU 4210.0048
GLU 4220.0045
GLN 4230.0054
LEU 4240.0067
GLU 4250.0083
HIS 4260.0094
LEU 4270.0088
ASP 4280.0091
PHE 4290.0090
GLN 4300.0096
HIS 4310.0098
SER 4320.0090
ASN 4330.0094
LEU 4340.0088
LYS 4350.0088
GLN 4360.0084
MET 4370.0084
SER 4380.0076
GLU 4390.0065
PHE 4400.0067
SER 4410.0078
VAL 4420.0079
PHE 4430.0086
LEU 4440.0077
SER 4450.0072
LEU 4460.0088
ARG 4470.0094
ASN 4480.0107
LEU 4490.0109
ILE 4500.0126
TYR 4510.0127
LEU 4520.0109
ASP 4530.0108
ILE 4540.0097
SER 4550.0098
HIS 4560.0097
THR 4570.0092
HIS 4580.0079
THR 4590.0069
ARG 4600.0056
VAL 4610.0055
ALA 4620.0055
PHE 4630.0064
ASN 4640.0073
GLY 4650.0086
ILE 4660.0090
PHE 4670.0098
ASN 4680.0099
GLY 4690.0112
LEU 4700.0123
SER 4710.0134
SER 4720.0147
LEU 4730.0136
GLU 4740.0147
VAL 4750.0139
LEU 4760.0118
LYS 4770.0107
MET 4780.0091
ALA 4790.0088
GLY 4800.0087
ASN 4810.0074
SER 4820.0059
PHE 4830.0028
GLN 4840.0016
GLU 4850.0038
ASN 4860.0038
PHE 4870.0029
LEU 4880.0007
PRO 4890.0037
ASP 4900.0068
ILE 4910.0074
PHE 4920.0088
THR 4930.0105
GLU 4940.0126
LEU 4950.0127
ARG 4960.0143
ASN 4970.0150
LEU 4980.0126
THR 4990.0127
PHE 5000.0115
LEU 5010.0092
ASP 5020.0074
LEU 5030.0050
SER 5040.0064
GLN 5050.0080
CYS 5060.0059
GLN 5070.0083
LEU 5080.0062
GLU 5090.0078
GLN 5100.0067
LEU 5110.0049
SER 5120.0053
PRO 5130.0070
THR 5140.0074
ALA 5150.0047
PHE 5160.0055
ASN 5170.0085
SER 5180.0109
LEU 5190.0096
SER 5200.0109
SER 5210.0117
LEU 5220.0076
GLN 5230.0071
VAL 5240.0065
LEU 5250.0041
ASN 5260.0055
MET 5270.0043
SER 5280.0066
HIS 5290.0092
ASN 5300.0089
ASN 5310.0108
PHE 5320.0107
PHE 5330.0115
SER 5340.0108
LEU 5350.0096
ASP 5360.0094
THR 5370.0068
PHE 5380.0063
PRO 5390.0046
TYR 5400.0040
LYS 5410.0046
CYS 5420.0060
LEU 5430.0037
ASN 5440.0055
SER 5450.0045
LEU 5460.0022
GLN 5470.0040
VAL 5480.0051
LEU 5490.0057
ASP 5500.0072
TYR 5510.0085
SER 5520.0094
LEU 5530.0101
ASN 5540.0105
HIS 5550.0109
ILE 5560.0106
MET 5570.0098
THR 5580.0099
SER 5590.0100
LYS 5600.0113
LYS 5610.0117
GLN 5620.0107
GLU 5630.0085
LEU 5640.0087
GLN 5650.0075
HIS 5660.0055
PHE 5670.0072
PRO 5680.0054
SER 5690.0074
SER 5700.0045
LEU 5710.0061
ALA 5720.0123
PHE 5730.0119
LEU 5740.0115
ASN 5750.0113
LEU 5760.0110
THR 5770.0100
GLN 5780.0096
ASN 5790.0088
ASP 5800.0069
PHE 5810.0058
ALA 5820.0034
CYS 5830.0093
THR 5840.0150
CYS 5850.0219
GLU 5860.0207
HIS 5870.0108
GLN 5880.0119
SER 5890.0142
PHE 5900.0113
LEU 5910.0068
GLN 5920.0099
TRP 5930.0117
ILE 5940.0085
LYS 5950.0085
ASP 5960.0129
GLN 5970.0132
ARG 5980.0112
GLN 5990.0139
LEU 6000.0152
LEU 6010.0127
VAL 6020.0144
GLU 6030.0120
VAL 6040.0079
GLU 6050.0073
ARG 6060.0095
MET 6070.0086
GLU 6080.0079
CYS 6090.0066
ALA 6100.0103
THR 6110.0095
PRO 6120.0218
SER 6130.0318
ASP 6140.0376
LYS 6150.0258
GLN 6160.0246
GLY 6170.0188
MET 6180.0138
PRO 6190.0068
VAL 6200.0019
LEU 6210.0049
SER 6220.0118
LEU 6230.0114
ASN 6240.0143
ILE 6250.0149
THR 6260.0181
CYS 6270.0669
GLU 10.0074
ALA 20.0035
ALA 30.0061
ALA 40.0049
LYS 50.0014
MET 60.0051
GLN 70.0050
ARG 80.0041
LEU 90.0052
VAL 100.0060
LEU 110.0044
LEU 120.0046
LEU 130.0030
ALA 140.0017
ILE 150.0024
SER 160.0047
LEU 170.0061
LEU 180.0036
LEU 190.0042
TYR 200.0083
GLN 210.0070
ASP 220.0037
LEU 230.0036
PRO 240.0026
VAL 250.0057
ARG 260.0091
SER 270.0068
GLU 280.0055
PHE 290.0062
GLU 300.0061
LEU 310.0047
ASP 320.0031
ARG 330.0032
ILE 340.0039
CYS 350.0037
GLY 360.0041
TYR 370.0059
GLY 380.0065
THR 390.0070
ALA 400.0038
ARG 410.0047
CYS 420.0072
ARG 430.0110
LYS 440.0162
LYS 450.0176
CYS 460.0118
ARG 470.0115
SER 480.0132
GLN 490.0124
GLU 500.0118
TYR 510.0120
ARG 520.0108
ILE 530.0089
GLY 540.0084
ARG 550.0094
CYS 560.0098
PRO 570.0141
ASN 580.0168
THR 590.0165
TYR 600.0147
ALA 610.0102
CYS 620.0084
CYS 630.0090
LEU 640.0091
ARG 650.0100
LYS 660.0086
TRP 670.0108
ASP 680.0082
GLU 690.0100
SER 700.0095
LEU 710.0109
LEU 720.0139
ASN 730.0133
ARG 740.0105
THR 750.0124
LYS 760.0127
PRO 770.0095
GLU 780.0104
ALA 790.0103
ALA 800.0062
ALA 810.0065
LYS 820.0019
LYS 830.0034
GLU 840.0014
MET 850.0044
ASN 860.0068
LEU 870.0084
SER 880.0074
VAL 890.0090
GLY 900.0079
LEU 910.0102
GLY 920.0177
GLY 930.0268
GLY 940.0263
SER 950.0190
ASN 960.0077
LEU 970.0102
SER 980.0088
VAL 990.0111
GLY 1000.0101
LEU 1010.0122
GLY 1020.0082
GLU 1030.0036
ILE 1040.0057
GLY 1050.0082
GLY 1060.0135
GLY 1070.0078
SER 1080.0090
LYS 1090.0106
LEU 1100.0150
LEU 1110.0190
ASP 1120.0208
ILE 1130.0171
ASN 1140.0212
LEU 1150.0187
GLY 1160.0238
ARG 1170.0222
GLY 1180.0211
GLY 1190.0168
GLY 1200.0144
SER 1210.0023
MET 1220.0054
VAL 1230.0066
ASP 1240.0095
LEU 1250.0118
THR 1260.0134
PHE 1270.0102
GLY 1280.0101
GLY 1290.0063
VAL 1300.0088
GLY 1310.0302
GLY 1320.0332
GLY 1330.0324
SER 1340.0284
THR 1350.0247
PHE 1360.0138
THR 1370.0112
PHE 1380.0081
PHE 1390.0072
PRO 1400.0084
LEU 1410.0085
VAL 1420.0050
ILE 1430.0267
GLY 1440.0433
GLY 1450.0643
GLY 1460.0380
SER 1470.0271
ASP 1480.0225
ALA 1490.0103
MET 1500.0109
TYR 1510.0072
LEU 1520.0081
GLY 1530.0088
PHE 1540.0110
ALA 1550.0147
ALA 1560.0290
GLY 1570.0305
GLY 1580.0338
GLY 1590.0320
SER 1600.0305
ALA 1610.0272
GLY 1620.0179
GLY 1630.0092
GLU 1640.0059
ASN 1650.0069
HIS 1660.0107
VAL 1670.0107
ALA 1680.0104
PHE 1690.0108
GLY 1700.0113
PRO 1710.0126
GLY 1720.0150
PRO 1730.0141
GLY 1740.0166
VAL 1750.0168
ASP 1760.0146
LEU 1770.0086
THR 1780.0069
PHE 1790.0088
GLY 1800.0156
GLY 1810.0231
VAL 1820.0144
GLN 1830.0088
PHE 1840.0113
ALA 1850.0206
MET 1860.0297
VAL 1870.0308
ASN 1880.0140
ASN 1890.0124
GLY 1900.0161
PRO 1910.0202
GLY 1920.0232
PRO 1930.0183
GLY 1940.0137
GLU 1950.0133
SER 1960.0163
PHE 1970.0163
THR 1980.0070
ALA 1990.0094
GLN 2000.0158
PRO 2010.0159
ALA 2020.0140
ASP 2030.0164
MET 2040.0135
GLN 2050.0094
ALA 2060.0207
GLY 2070.0104
ILE 2080.0089
LYS 2090.0037
GLY 2100.0141
PRO 2110.0160
GLY 2120.0144
PRO 2130.0093
GLY 2140.0080
GLY 2150.0198
SER 2160.0080
ILE 2170.0132
GLN 2180.0102
VAL 2190.0130
ILE 2200.0181
ASN 2210.0523
GLY 2220.0409
SER 2230.0275
THR 2240.0216
ILE 2250.0189
GLY 2260.0117
THR 2270.0092
GLY 2280.0109
SER 2290.0110
LYS 2300.0095
LYS 2310.0063
THR 2320.0053
ILE 2330.0058
LEU 2340.0098
ILE 2350.0178
TYR 2360.0205
SER 2370.0221
ILE 2380.0196
ILE 2390.0145
GLY 2400.0139
VAL 2410.0130
LYS 2420.0116
LYS 2430.0117
GLY 2440.0121
THR 2450.0118
LEU 2460.0113
ALA 2470.0070
TRP 2480.0053
ALA 2490.0095
ARG 2500.0100
THR 2510.0186
GLY 2520.0189
PHE 2530.0139
SER 2540.0139
PRO 2550.0144
ALA 2560.0262
LYS 2570.0244
LYS 2580.0164
LEU 2590.0105
ASN 2600.0075
ALA 2610.0207
GLY 2620.0158
VAL 2630.0160
VAL 2640.0289
ARG 2650.0191
VAL 2660.0164
PHE 2670.0104
PHE 2680.0087
LEU 2690.0136
ASN 2700.0222
GLN 2710.0160
LYS 2720.0088
LYS 2730.0136
ALA 2740.0133
LYS 2750.0045
ASP 2760.0106
VAL 2770.0110
LEU 2780.0072
ARG 2790.0073
LYS 2800.0109
THR 2810.0145
SER 2820.0101
ARG 2830.0092
PRO 2840.0057
MET 2850.0066
VAL 2860.0078
ASP 2870.0089
LEU 2880.0058
THR 2890.0067
PHE 2900.0050
GLY 2910.0073
GLY 2920.0082

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.