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***  TLR_8_simulation  ***

<R2> analysis for 2608260327253941399

---  normal mode 85  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0737
GLU 270.0096
PRO 280.0116
CYS 290.0092
VAL 300.0105
GLU 310.0085
VAL 320.0102
VAL 330.0076
PRO 340.0042
ASN 350.0020
ILE 360.0050
THR 370.0059
TYR 380.0055
GLN 390.0078
CYS 400.0065
MET 410.0089
GLU 420.0100
LEU 430.0091
ASN 440.0081
PHE 450.0054
TYR 460.0039
LYS 470.0032
ILE 480.0023
PRO 490.0032
ASP 500.0042
ASN 510.0058
LEU 520.0034
PRO 530.0036
PHE 540.0056
SER 550.0054
THR 560.0038
LYS 570.0058
ASN 580.0060
LEU 590.0048
ASP 600.0059
LEU 610.0051
SER 620.0069
PHE 630.0078
ASN 640.0062
PRO 650.0058
LEU 660.0043
ARG 670.0057
HIS 680.0054
LEU 690.0049
GLY 700.0048
SER 710.0045
TYR 720.0037
SER 730.0035
PHE 740.0034
PHE 750.0038
SER 760.0042
PHE 770.0044
PRO 780.0059
GLU 790.0062
LEU 800.0055
GLN 810.0066
VAL 820.0054
LEU 830.0049
ASP 840.0052
LEU 850.0052
SER 860.0059
ARG 870.0053
CYS 880.0053
GLU 890.0060
ILE 900.0058
GLN 910.0064
THR 920.0062
ILE 930.0054
GLU 940.0056
ASP 950.0055
GLY 960.0047
ALA 970.0044
TYR 980.0045
GLN 990.0045
SER 1000.0045
LEU 1010.0047
SER 1020.0041
HIS 1030.0045
LEU 1040.0043
SER 1050.0046
THR 1060.0044
LEU 1070.0032
ILE 1080.0032
LEU 1090.0033
THR 1100.0031
GLY 1110.0032
ASN 1120.0043
PRO 1130.0048
ILE 1140.0050
GLN 1150.0058
SER 1160.0063
LEU 1170.0052
ALA 1180.0059
LEU 1190.0056
GLY 1200.0054
ALA 1210.0048
PHE 1220.0040
SER 1230.0041
GLY 1240.0042
LEU 1250.0038
SER 1260.0035
SER 1270.0025
LEU 1280.0026
GLN 1290.0036
LYS 1300.0035
LEU 1310.0029
VAL 1320.0022
ALA 1330.0022
VAL 1340.0027
GLU 1350.0025
THR 1360.0021
ASN 1370.0036
LEU 1380.0037
ALA 1390.0034
SER 1400.0037
LEU 1410.0042
GLU 1420.0043
ASN 1430.0045
PHE 1440.0041
PRO 1450.0037
ILE 1460.0033
GLY 1470.0036
HIS 1480.0036
LEU 1490.0036
LYS 1500.0038
THR 1510.0037
LEU 1520.0043
LYS 1530.0047
GLU 1540.0045
LEU 1550.0041
ASN 1560.0039
VAL 1570.0041
ALA 1580.0040
HIS 1590.0043
ASN 1600.0045
LEU 1610.0046
ILE 1620.0060
GLN 1630.0059
SER 1640.0057
PHE 1650.0049
LYS 1660.0056
LEU 1670.0048
PRO 1680.0054
GLU 1690.0052
TYR 1700.0050
PHE 1710.0042
SER 1720.0043
ASN 1730.0041
LEU 1740.0041
THR 1750.0040
ASN 1760.0040
LEU 1770.0045
GLU 1780.0042
HIS 1790.0042
LEU 1800.0042
ASP 1810.0041
LEU 1820.0039
SER 1830.0038
SER 1840.0044
ASN 1850.0047
LYS 1860.0048
ILE 1870.0055
GLN 1880.0053
SER 1890.0052
ILE 1900.0052
TYR 1910.0066
CYS 1920.0072
THR 1930.0078
ASP 1940.0066
LEU 1950.0057
ARG 1960.0068
VAL 1970.0058
LEU 1980.0046
HIS 1990.0056
GLN 2000.0055
MET 2010.0041
PRO 2020.0046
LEU 2030.0036
LEU 2040.0032
ASN 2050.0020
LEU 2060.0026
SER 2070.0022
LEU 2080.0026
ASP 2090.0027
LEU 2100.0027
SER 2110.0026
LEU 2120.0035
ASN 2130.0036
PRO 2140.0039
MET 2150.0031
ASN 2160.0032
PHE 2170.0041
ILE 2180.0041
GLN 2190.0057
PRO 2200.0059
GLY 2210.0069
ALA 2220.0061
PHE 2230.0050
LYS 2240.0064
GLU 2250.0064
ILE 2260.0047
ARG 2270.0031
LEU 2280.0020
HIS 2290.0013
LYS 2300.0006
LEU 2310.0008
THR 2320.0005
LEU 2330.0008
ARG 2340.0017
ASN 2350.0023
ASN 2360.0017
PHE 2370.0025
ASP 2380.0037
SER 2390.0037
LEU 2400.0037
ASN 2410.0031
VAL 2420.0016
MET 2430.0017
LYS 2440.0023
THR 2450.0015
CYS 2460.0013
ILE 2470.0016
GLN 2480.0027
GLY 2490.0029
LEU 2500.0029
ALA 2510.0044
GLY 2520.0048
LEU 2530.0036
GLU 2540.0036
VAL 2550.0023
HIS 2560.0025
ARG 2570.0021
LEU 2580.0020
VAL 2590.0021
LEU 2600.0021
GLY 2610.0025
GLU 2620.0029
PHE 2630.0039
ARG 2640.0055
ASN 2650.0059
GLU 2660.0048
GLY 2670.0048
ASN 2680.0045
LEU 2690.0046
GLU 2700.0054
LYS 2710.0054
PHE 2720.0046
ASP 2730.0050
LYS 2740.0050
SER 2750.0045
ALA 2760.0038
LEU 2770.0035
GLU 2780.0037
GLY 2790.0029
LEU 2800.0031
CYS 2810.0039
ASN 2820.0043
LEU 2830.0033
THR 2840.0035
ILE 2850.0028
GLU 2860.0031
GLU 2870.0029
PHE 2880.0028
ARG 2890.0028
LEU 2900.0028
ALA 2910.0028
TYR 2920.0031
LEU 2930.0034
ASP 2940.0036
TYR 2950.0035
TYR 2960.0025
LEU 2970.0021
ASP 2980.0020
GLY 2990.0020
ILE 3000.0020
ILE 3010.0021
ASP 3020.0035
LEU 3030.0032
PHE 3040.0030
ASN 3050.0031
CYS 3060.0030
LEU 3070.0026
THR 3080.0021
ASN 3090.0023
VAL 3100.0024
SER 3110.0020
SER 3120.0026
PHE 3130.0023
SER 3140.0025
LEU 3150.0025
VAL 3160.0029
SER 3170.0034
VAL 3180.0028
THR 3190.0027
ILE 3200.0019
GLU 3210.0023
ARG 3220.0028
VAL 3230.0027
LYS 3240.0034
ASP 3250.0024
PHE 3260.0021
SER 3270.0028
TYR 3280.0022
ASN 3290.0026
PHE 3300.0018
GLY 3310.0022
TRP 3320.0015
GLN 3330.0017
HIS 3340.0016
LEU 3350.0013
GLU 3360.0018
LEU 3370.0024
VAL 3380.0036
ASN 3390.0048
CYS 3400.0045
LYS 3410.0052
PHE 3420.0051
GLY 3430.0059
GLN 3440.0056
PHE 3450.0049
PRO 3460.0038
THR 3470.0042
LEU 3480.0031
LYS 3490.0034
LEU 3500.0026
LYS 3510.0034
SER 3520.0023
LEU 3530.0014
LYS 3540.0012
ARG 3550.0009
LEU 3560.0012
THR 3570.0019
PHE 3580.0027
THR 3590.0038
SER 3600.0052
ASN 3610.0052
LYS 3620.0071
GLY 3630.0072
GLY 3640.0070
ASN 3650.0064
ALA 3660.0065
PHE 3670.0056
SER 3680.0059
GLU 3690.0054
VAL 3700.0044
ASP 3710.0045
LEU 3720.0032
PRO 3730.0036
SER 3740.0028
LEU 3750.0019
GLU 3760.0012
PHE 3770.0008
LEU 3780.0014
ASP 3790.0021
LEU 3800.0029
SER 3810.0035
ARG 3820.0047
ASN 3830.0049
GLY 3840.0054
LEU 3850.0049
SER 3860.0053
PHE 3870.0051
LYS 3880.0056
GLY 3890.0050
CYS 3900.0039
CYS 3910.0035
SER 3920.0042
GLN 3930.0044
SER 3940.0054
ASP 3950.0048
PHE 3960.0041
GLY 3970.0045
THR 3980.0037
ILE 3990.0036
SER 4000.0030
LEU 4010.0021
LYS 4020.0015
TYR 4030.0011
LEU 4040.0015
ASP 4050.0020
LEU 4060.0027
SER 4070.0032
PHE 4080.0040
ASN 4090.0040
GLY 4100.0045
VAL 4110.0043
ILE 4120.0039
THR 4130.0039
MET 4140.0032
SER 4150.0036
SER 4160.0033
ASN 4170.0025
PHE 4180.0027
LEU 4190.0034
GLY 4200.0037
LEU 4210.0029
GLU 4220.0026
GLN 4230.0025
LEU 4240.0018
GLU 4250.0014
HIS 4260.0010
LEU 4270.0012
ASP 4280.0018
PHE 4290.0023
GLN 4300.0028
HIS 4310.0035
SER 4320.0033
ASN 4330.0036
LEU 4340.0031
LYS 4350.0032
GLN 4360.0029
MET 4370.0028
SER 4380.0031
GLU 4390.0025
PHE 4400.0016
SER 4410.0015
VAL 4420.0017
PHE 4430.0012
LEU 4440.0011
SER 4450.0014
LEU 4460.0013
ARG 4470.0012
ASN 4480.0016
LEU 4490.0011
ILE 4500.0011
TYR 4510.0008
LEU 4520.0013
ASP 4530.0019
ILE 4540.0023
SER 4550.0028
HIS 4560.0034
THR 4570.0040
HIS 4580.0045
THR 4590.0038
ARG 4600.0045
VAL 4610.0041
ALA 4620.0056
PHE 4630.0048
ASN 4640.0048
GLY 4650.0037
ILE 4660.0030
PHE 4670.0024
ASN 4680.0025
GLY 4690.0019
LEU 4700.0014
SER 4710.0021
SER 4720.0018
LEU 4730.0010
GLU 4740.0013
VAL 4750.0009
LEU 4760.0011
LYS 4770.0019
MET 4780.0026
ALA 4790.0031
GLY 4800.0040
ASN 4810.0040
SER 4820.0052
PHE 4830.0054
GLN 4840.0067
GLU 4850.0073
ASN 4860.0061
PHE 4870.0055
LEU 4880.0044
PRO 4890.0049
ASP 4900.0045
ILE 4910.0037
PHE 4920.0031
THR 4930.0041
GLU 4940.0037
LEU 4950.0026
ARG 4960.0036
ASN 4970.0029
LEU 4980.0019
THR 4990.0024
PHE 5000.0016
LEU 5010.0008
ASP 5020.0018
LEU 5030.0022
SER 5040.0029
GLN 5050.0038
CYS 5060.0037
GLN 5070.0048
LEU 5080.0037
GLU 5090.0040
GLN 5100.0038
LEU 5110.0031
SER 5120.0047
PRO 5130.0043
THR 5140.0046
ALA 5150.0037
PHE 5160.0029
ASN 5170.0043
SER 5180.0046
LEU 5190.0034
SER 5200.0044
SER 5210.0042
LEU 5220.0029
GLN 5230.0035
VAL 5240.0029
LEU 5250.0017
ASN 5260.0021
MET 5270.0019
SER 5280.0027
HIS 5290.0032
ASN 5300.0027
ASN 5310.0029
PHE 5320.0025
PHE 5330.0024
SER 5340.0024
LEU 5350.0026
ASP 5360.0024
THR 5370.0022
PHE 5380.0020
PRO 5390.0022
TYR 5400.0020
LYS 5410.0025
CYS 5420.0038
LEU 5430.0033
ASN 5440.0045
SER 5450.0043
LEU 5460.0036
GLN 5470.0042
VAL 5480.0039
LEU 5490.0032
ASP 5500.0032
TYR 5510.0028
SER 5520.0032
LEU 5530.0032
ASN 5540.0028
HIS 5550.0029
ILE 5560.0030
MET 5570.0035
THR 5580.0039
SER 5590.0044
LYS 5600.0053
LYS 5610.0059
GLN 5620.0053
GLU 5630.0039
LEU 5640.0039
GLN 5650.0034
HIS 5660.0022
PHE 5670.0027
PRO 5680.0031
SER 5690.0042
SER 5700.0041
LEU 5710.0039
ALA 5720.0041
PHE 5730.0039
LEU 5740.0035
ASN 5750.0035
LEU 5760.0032
THR 5770.0027
GLN 5780.0029
ASN 5790.0033
ASP 5800.0037
PHE 5810.0036
ALA 5820.0052
CYS 5830.0021
THR 5840.0028
CYS 5850.0042
GLU 5860.0071
HIS 5870.0052
GLN 5880.0049
SER 5890.0065
PHE 5900.0050
LEU 5910.0029
GLN 5920.0047
TRP 5930.0051
ILE 5940.0028
LYS 5950.0039
ASP 5960.0057
GLN 5970.0041
ARG 5980.0026
GLN 5990.0029
LEU 6000.0031
LEU 6010.0020
VAL 6020.0024
GLU 6030.0012
VAL 6040.0010
GLU 6050.0011
ARG 6060.0013
MET 6070.0017
GLU 6080.0039
CYS 6090.0047
ALA 6100.0074
THR 6110.0083
PRO 6120.0096
SER 6130.0140
ASP 6140.0136
LYS 6150.0096
GLN 6160.0109
GLY 6170.0092
MET 6180.0073
PRO 6190.0049
VAL 6200.0020
LEU 6210.0040
SER 6220.0072
LEU 6230.0047
ASN 6240.0054
ILE 6250.0054
THR 6260.0063
CYS 6270.0062
GLU 10.0039
ALA 20.0021
ALA 30.0016
ALA 40.0016
LYS 50.0020
MET 60.0015
GLN 70.0018
ARG 80.0026
LEU 90.0028
VAL 100.0031
LEU 110.0022
LEU 120.0019
LEU 130.0014
ALA 140.0014
ILE 150.0009
SER 160.0015
LEU 170.0020
LEU 180.0022
LEU 190.0027
TYR 200.0031
GLN 210.0029
ASP 220.0029
LEU 230.0027
PRO 240.0027
VAL 250.0026
ARG 260.0038
SER 270.0029
GLU 280.0051
PHE 290.0061
GLU 300.0032
LEU 310.0028
ASP 320.0036
ARG 330.0031
ILE 340.0023
CYS 350.0028
GLY 360.0019
TYR 370.0018
GLY 380.0020
THR 390.0022
ALA 400.0024
ARG 410.0012
CYS 420.0018
ARG 430.0043
LYS 440.0068
LYS 450.0087
CYS 460.0083
ARG 470.0086
SER 480.0099
GLN 490.0081
GLU 500.0073
TYR 510.0087
ARG 520.0067
ILE 530.0071
GLY 540.0057
ARG 550.0038
CYS 560.0042
PRO 570.0077
ASN 580.0073
THR 590.0045
TYR 600.0027
ALA 610.0025
CYS 620.0021
CYS 630.0032
LEU 640.0038
ARG 650.0048
LYS 660.0077
TRP 670.0068
ASP 680.0062
GLU 690.0061
SER 700.0052
LEU 710.0045
LEU 720.0055
ASN 730.0058
ARG 740.0047
THR 750.0053
LYS 760.0090
PRO 770.0150
GLU 780.0140
ALA 790.0237
ALA 800.0272
ALA 810.0344
LYS 820.0323
LYS 830.0248
GLU 840.0180
MET 850.0137
ASN 860.0100
LEU 870.0073
SER 880.0067
VAL 890.0085
GLY 900.0094
LEU 910.0129
GLY 920.0124
GLY 930.0187
GLY 940.0195
SER 950.0208
ASN 960.0146
LEU 970.0133
SER 980.0110
VAL 990.0085
GLY 1000.0110
LEU 1010.0154
GLY 1020.0173
GLU 1030.0183
ILE 1040.0113
GLY 1050.0188
GLY 1060.0401
GLY 1070.0321
SER 1080.0255
LYS 1090.0163
LEU 1100.0153
LEU 1110.0047
ASP 1120.0087
ILE 1130.0098
ASN 1140.0181
LEU 1150.0193
GLY 1160.0265
ARG 1170.0303
GLY 1180.0392
GLY 1190.0298
GLY 1200.0224
SER 1210.0159
MET 1220.0154
VAL 1230.0116
ASP 1240.0132
LEU 1250.0126
THR 1260.0133
PHE 1270.0131
GLY 1280.0123
GLY 1290.0118
VAL 1300.0119
GLY 1310.0420
GLY 1320.0343
GLY 1330.0265
SER 1340.0177
THR 1350.0129
PHE 1360.0082
THR 1370.0069
PHE 1380.0062
PHE 1390.0079
PRO 1400.0077
LEU 1410.0065
VAL 1420.0116
ILE 1430.0072
GLY 1440.0176
GLY 1450.0182
GLY 1460.0161
SER 1470.0141
ASP 1480.0119
ALA 1490.0095
MET 1500.0053
TYR 1510.0049
LEU 1520.0048
GLY 1530.0054
PHE 1540.0055
ALA 1550.0065
ALA 1560.0078
GLY 1570.0095
GLY 1580.0103
GLY 1590.0241
SER 1600.0356
ALA 1610.0445
GLY 1620.0366
GLY 1630.0233
GLU 1640.0204
ASN 1650.0121
HIS 1660.0142
VAL 1670.0124
ALA 1680.0113
PHE 1690.0097
GLY 1700.0093
PRO 1710.0342
GLY 1720.0307
PRO 1730.0214
GLY 1740.0104
VAL 1750.0131
ASP 1760.0173
LEU 1770.0087
THR 1780.0141
PHE 1790.0202
GLY 1800.0302
GLY 1810.0655
VAL 1820.0613
GLN 1830.0440
PHE 1840.0300
ALA 1850.0207
MET 1860.0193
VAL 1870.0264
ASN 1880.0170
ASN 1890.0298
GLY 1900.0235
PRO 1910.0277
GLY 1920.0426
PRO 1930.0352
GLY 1940.0212
GLU 1950.0337
SER 1960.0737
PHE 1970.0508
THR 1980.0045
ALA 1990.0237
GLN 2000.0534
PRO 2010.0511
ALA 2020.0244
ASP 2030.0535
MET 2040.0654
GLN 2050.0321
ALA 2060.0439
GLY 2070.0367
ILE 2080.0419
LYS 2090.0240
GLY 2100.0411
PRO 2110.0285
GLY 2120.0268
PRO 2130.0239
GLY 2140.0156
GLY 2150.0118
SER 2160.0359
ILE 2170.0316
GLN 2180.0364
VAL 2190.0348
ILE 2200.0354
ASN 2210.0659
GLY 2220.0539
SER 2230.0364
THR 2240.0245
ILE 2250.0263
GLY 2260.0142
THR 2270.0085
GLY 2280.0128
SER 2290.0156
LYS 2300.0138
LYS 2310.0070
THR 2320.0076
ILE 2330.0064
LEU 2340.0061
ILE 2350.0075
TYR 2360.0086
SER 2370.0105
ILE 2380.0121
ILE 2390.0091
GLY 2400.0121
VAL 2410.0109
LYS 2420.0086
LYS 2430.0092
GLY 2440.0105
THR 2450.0099
LEU 2460.0104
ALA 2470.0071
TRP 2480.0056
ALA 2490.0039
ARG 2500.0043
THR 2510.0071
GLY 2520.0075
PHE 2530.0062
SER 2540.0072
PRO 2550.0069
ALA 2560.0178
LYS 2570.0126
LYS 2580.0124
LEU 2590.0103
ASN 2600.0116
ALA 2610.0203
GLY 2620.0135
VAL 2630.0083
VAL 2640.0018
ARG 2650.0070
VAL 2660.0103
PHE 2670.0103
PHE 2680.0133
LEU 2690.0114
ASN 2700.0148
GLN 2710.0098
LYS 2720.0049
LYS 2730.0078
ALA 2740.0075
LYS 2750.0028
ASP 2760.0042
VAL 2770.0044
LEU 2780.0016
ARG 2790.0047
LYS 2800.0070
THR 2810.0090
SER 2820.0072
ARG 2830.0040
PRO 2840.0015
MET 2850.0065
VAL 2860.0102
ASP 2870.0094
LEU 2880.0047
THR 2890.0042
PHE 2900.0049
GLY 2910.0059
GLY 2920.0080

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.