CNRS Nantes University US2B US2B
home |  start a new run |  job status |  references&downloads |  examples |  help  

Should you encounter any unexpected behaviour,
please let us know.
elNémo has been relocated.
**Some cleaning from time to time**
Sorry for the inconvenience.


***  TLR_8_simulation  ***

<R2> analysis for 2608260327253941399

---  normal mode 86  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0546
GLU 270.0115
PRO 280.0143
CYS 290.0102
VAL 300.0118
GLU 310.0087
VAL 320.0120
VAL 330.0102
PRO 340.0048
ASN 350.0054
ILE 360.0088
THR 370.0076
TYR 380.0054
GLN 390.0085
CYS 400.0067
MET 410.0102
GLU 420.0118
LEU 430.0113
ASN 440.0100
PHE 450.0065
TYR 460.0063
LYS 470.0038
ILE 480.0024
PRO 490.0040
ASP 500.0076
ASN 510.0080
LEU 520.0044
PRO 530.0061
PHE 540.0096
SER 550.0097
THR 560.0068
LYS 570.0085
ASN 580.0077
LEU 590.0053
ASP 600.0059
LEU 610.0042
SER 620.0070
PHE 630.0077
ASN 640.0051
PRO 650.0037
LEU 660.0013
ARG 670.0047
HIS 680.0047
LEU 690.0047
GLY 700.0047
SER 710.0048
TYR 720.0043
SER 730.0038
PHE 740.0047
PHE 750.0059
SER 760.0070
PHE 770.0067
PRO 780.0084
GLU 790.0087
LEU 800.0073
GLN 810.0081
VAL 820.0059
LEU 830.0053
ASP 840.0053
LEU 850.0052
SER 860.0062
ARG 870.0057
CYS 880.0051
GLU 890.0059
ILE 900.0057
GLN 910.0067
THR 920.0065
ILE 930.0058
GLU 940.0061
ASP 950.0058
GLY 960.0051
ALA 970.0047
TYR 980.0046
GLN 990.0047
SER 1000.0049
LEU 1010.0050
SER 1020.0031
HIS 1030.0041
LEU 1040.0039
SER 1050.0044
THR 1060.0042
LEU 1070.0030
ILE 1080.0035
LEU 1090.0041
THR 1100.0043
GLY 1110.0051
ASN 1120.0059
PRO 1130.0069
ILE 1140.0065
GLN 1150.0075
SER 1160.0074
LEU 1170.0066
ALA 1180.0073
LEU 1190.0067
GLY 1200.0063
ALA 1210.0053
PHE 1220.0038
SER 1230.0045
GLY 1240.0040
LEU 1250.0031
SER 1260.0036
SER 1270.0047
LEU 1280.0037
GLN 1290.0055
LYS 1300.0045
LEU 1310.0021
VAL 1320.0017
ALA 1330.0012
VAL 1340.0025
GLU 1350.0032
THR 1360.0029
ASN 1370.0033
LEU 1380.0019
ALA 1390.0015
SER 1400.0010
LEU 1410.0021
GLU 1420.0028
ASN 1430.0030
PHE 1440.0027
PRO 1450.0035
ILE 1460.0036
GLY 1470.0057
HIS 1480.0064
LEU 1490.0057
LYS 1500.0075
THR 1510.0074
LEU 1520.0074
LYS 1530.0084
GLU 1540.0069
LEU 1550.0048
ASN 1560.0042
VAL 1570.0027
ALA 1580.0038
HIS 1590.0039
ASN 1600.0027
LEU 1610.0023
ILE 1620.0038
GLN 1630.0040
SER 1640.0040
PHE 1650.0039
LYS 1660.0039
LEU 1670.0038
PRO 1680.0041
GLU 1690.0046
TYR 1700.0055
PHE 1710.0053
SER 1720.0069
ASN 1730.0071
LEU 1740.0068
THR 1750.0080
ASN 1760.0082
LEU 1770.0066
GLU 1780.0070
HIS 1790.0061
LEU 1800.0049
ASP 1810.0045
LEU 1820.0034
SER 1830.0037
SER 1840.0037
ASN 1850.0034
LYS 1860.0037
ILE 1870.0050
GLN 1880.0058
SER 1890.0057
ILE 1900.0051
TYR 1910.0060
CYS 1920.0062
THR 1930.0064
ASP 1940.0056
LEU 1950.0051
ARG 1960.0056
VAL 1970.0047
LEU 1980.0044
HIS 1990.0049
GLN 2000.0046
MET 2010.0044
PRO 2020.0037
LEU 2030.0028
LEU 2040.0025
ASN 2050.0017
LEU 2060.0024
SER 2070.0016
LEU 2080.0015
ASP 2090.0017
LEU 2100.0021
SER 2110.0023
LEU 2120.0034
ASN 2130.0036
PRO 2140.0050
MET 2150.0045
ASN 2160.0056
PHE 2170.0060
ILE 2180.0044
GLN 2190.0058
PRO 2200.0054
GLY 2210.0064
ALA 2220.0057
PHE 2230.0046
LYS 2240.0071
GLU 2250.0080
ILE 2260.0056
ARG 2270.0050
LEU 2280.0042
HIS 2290.0054
LYS 2300.0048
LEU 2310.0035
THR 2320.0039
LEU 2330.0030
ARG 2340.0046
ASN 2350.0052
ASN 2360.0039
PHE 2370.0057
ASP 2380.0079
SER 2390.0083
LEU 2400.0078
ASN 2410.0070
VAL 2420.0066
MET 2430.0054
LYS 2440.0043
THR 2450.0039
CYS 2460.0026
ILE 2470.0026
GLN 2480.0020
GLY 2490.0028
LEU 2500.0023
ALA 2510.0039
GLY 2520.0060
LEU 2530.0051
GLU 2540.0073
VAL 2550.0074
HIS 2560.0100
ARG 2570.0106
LEU 2580.0082
VAL 2590.0085
LEU 2600.0069
GLY 2610.0079
GLU 2620.0071
PHE 2630.0069
ARG 2640.0091
ASN 2650.0072
GLU 2660.0064
GLY 2670.0078
ASN 2680.0083
LEU 2690.0084
GLU 2700.0102
LYS 2710.0104
PHE 2720.0092
ASP 2730.0082
LYS 2740.0069
SER 2750.0057
ALA 2760.0066
LEU 2770.0067
GLU 2780.0048
GLY 2790.0045
LEU 2800.0066
CYS 2810.0066
ASN 2820.0058
LEU 2830.0064
THR 2840.0088
ILE 2850.0099
GLU 2860.0124
GLU 2870.0122
PHE 2880.0108
ARG 2890.0112
LEU 2900.0104
ALA 2910.0123
TYR 2920.0112
LEU 2930.0107
ASP 2940.0113
TYR 2950.0108
TYR 2960.0113
LEU 2970.0110
ASP 2980.0098
GLY 2990.0076
ILE 3000.0071
ILE 3010.0049
ASP 3020.0061
LEU 3030.0073
PHE 3040.0083
ASN 3050.0073
CYS 3060.0082
LEU 3070.0100
THR 3080.0092
ASN 3090.0110
VAL 3100.0120
SER 3110.0129
SER 3120.0135
PHE 3130.0118
SER 3140.0128
LEU 3150.0123
VAL 3160.0146
SER 3170.0160
VAL 3180.0138
THR 3190.0133
ILE 3200.0108
GLU 3210.0109
ARG 3220.0085
VAL 3230.0065
LYS 3240.0051
ASP 3250.0034
PHE 3260.0035
SER 3270.0022
TYR 3280.0040
ASN 3290.0069
PHE 3300.0083
GLY 3310.0112
TRP 3320.0108
GLN 3330.0118
HIS 3340.0118
LEU 3350.0104
GLU 3360.0112
LEU 3370.0110
VAL 3380.0146
ASN 3390.0168
CYS 3400.0143
LYS 3410.0148
PHE 3420.0128
GLY 3430.0139
GLN 3440.0110
PHE 3450.0079
PRO 3460.0058
THR 3470.0033
LEU 3480.0019
LYS 3490.0052
LEU 3500.0073
LYS 3510.0109
SER 3520.0101
LEU 3530.0087
LYS 3540.0093
ARG 3550.0088
LEU 3560.0072
THR 3570.0089
PHE 3580.0072
THR 3590.0108
SER 3600.0140
ASN 3610.0124
LYS 3620.0156
GLY 3630.0156
GLY 3640.0138
ASN 3650.0106
ALA 3660.0093
PHE 3670.0066
SER 3680.0082
GLU 3690.0085
VAL 3700.0065
ASP 3710.0095
LEU 3720.0083
PRO 3730.0106
SER 3740.0110
LEU 3750.0087
GLU 3760.0090
PHE 3770.0078
LEU 3780.0046
ASP 3790.0048
LEU 3800.0032
SER 3810.0062
ARG 3820.0089
ASN 3830.0089
GLY 3840.0096
LEU 3850.0079
SER 3860.0087
PHE 3870.0083
LYS 3880.0114
GLY 3890.0115
CYS 3900.0083
CYS 3910.0088
SER 3920.0121
GLN 3930.0136
SER 3940.0142
ASP 3950.0104
PHE 3960.0092
GLY 3970.0125
THR 3980.0128
ILE 3990.0139
SER 4000.0137
LEU 4010.0111
LYS 4020.0110
TYR 4030.0080
LEU 4040.0049
ASP 4050.0024
LEU 4060.0011
SER 4070.0041
PHE 4080.0059
ASN 4090.0063
GLY 4100.0079
VAL 4110.0083
ILE 4120.0070
THR 4130.0087
MET 4140.0080
SER 4150.0110
SER 4160.0114
ASN 4170.0092
PHE 4180.0103
LEU 4190.0132
GLY 4200.0148
LEU 4210.0126
GLU 4220.0124
GLN 4230.0130
LEU 4240.0104
GLU 4250.0102
HIS 4260.0080
LEU 4270.0046
ASP 4280.0023
PHE 4290.0024
GLN 4300.0020
HIS 4310.0044
SER 4320.0048
ASN 4330.0060
LEU 4340.0052
LYS 4350.0065
GLN 4360.0066
MET 4370.0026
SER 4380.0023
GLU 4390.0034
PHE 4400.0032
SER 4410.0045
VAL 4420.0045
PHE 4430.0055
LEU 4440.0063
SER 4450.0087
LEU 4460.0087
ARG 4470.0083
ASN 4480.0101
LEU 4490.0082
ILE 4500.0088
TYR 4510.0069
LEU 4520.0036
ASP 4530.0021
ILE 4540.0018
SER 4550.0024
HIS 4560.0041
THR 4570.0054
HIS 4580.0067
THR 4590.0045
ARG 4600.0067
VAL 4610.0065
ALA 4620.0094
PHE 4630.0080
ASN 4640.0097
GLY 4650.0080
ILE 4660.0050
PHE 4670.0048
ASN 4680.0062
GLY 4690.0069
LEU 4700.0075
SER 4710.0102
SER 4720.0104
LEU 4730.0080
GLU 4740.0094
VAL 4750.0071
LEU 4760.0039
LYS 4770.0021
MET 4780.0023
ALA 4790.0037
GLY 4800.0061
ASN 4810.0061
SER 4820.0101
PHE 4830.0112
GLN 4840.0149
GLU 4850.0183
ASN 4860.0155
PHE 4870.0147
LEU 4880.0115
PRO 4890.0134
ASP 4900.0138
ILE 4910.0107
PHE 4920.0098
THR 4930.0138
GLU 4940.0132
LEU 4950.0114
ARG 4960.0151
ASN 4970.0138
LEU 4980.0103
THR 4990.0109
PHE 5000.0077
LEU 5010.0041
ASP 5020.0025
LEU 5030.0031
SER 5040.0056
GLN 5050.0085
CYS 5060.0079
GLN 5070.0122
LEU 5080.0103
GLU 5090.0131
GLN 5100.0130
LEU 5110.0111
SER 5120.0154
PRO 5130.0151
THR 5140.0158
ALA 5150.0122
PHE 5160.0105
ASN 5170.0146
SER 5180.0158
LEU 5190.0129
SER 5200.0157
SER 5210.0153
LEU 5220.0104
GLN 5230.0105
VAL 5240.0078
LEU 5250.0040
ASN 5260.0043
MET 5270.0045
SER 5280.0073
HIS 5290.0095
ASN 5300.0086
ASN 5310.0103
PHE 5320.0054
PHE 5330.0055
SER 5340.0043
LEU 5350.0035
ASP 5360.0023
THR 5370.0029
PHE 5380.0042
PRO 5390.0049
TYR 5400.0031
LYS 5410.0045
CYS 5420.0103
LEU 5430.0087
ASN 5440.0116
SER 5450.0116
LEU 5460.0085
GLN 5470.0082
VAL 5480.0074
LEU 5490.0052
ASP 5500.0065
TYR 5510.0062
SER 5520.0075
LEU 5530.0081
ASN 5540.0076
HIS 5550.0074
ILE 5560.0070
MET 5570.0078
THR 5580.0073
SER 5590.0073
LYS 5600.0076
LYS 5610.0082
GLN 5620.0078
GLU 5630.0056
LEU 5640.0064
GLN 5650.0059
HIS 5660.0039
PHE 5670.0025
PRO 5680.0042
SER 5690.0062
SER 5700.0073
LEU 5710.0063
ALA 5720.0059
PHE 5730.0063
LEU 5740.0058
ASN 5750.0068
LEU 5760.0070
THR 5770.0055
GLN 5780.0050
ASN 5790.0066
ASP 5800.0074
PHE 5810.0083
ALA 5820.0143
CYS 5830.0108
THR 5840.0150
CYS 5850.0147
GLU 5860.0203
HIS 5870.0132
GLN 5880.0109
SER 5890.0142
PHE 5900.0118
LEU 5910.0071
GLN 5920.0098
TRP 5930.0111
ILE 5940.0078
LYS 5950.0096
ASP 5960.0128
GLN 5970.0104
ARG 5980.0091
GLN 5990.0097
LEU 6000.0083
LEU 6010.0069
VAL 6020.0061
GLU 6030.0041
VAL 6040.0024
GLU 6050.0023
ARG 6060.0015
MET 6070.0016
GLU 6080.0071
CYS 6090.0112
ALA 6100.0163
THR 6110.0210
PRO 6120.0280
SER 6130.0339
ASP 6140.0329
LYS 6150.0232
GLN 6160.0240
GLY 6170.0194
MET 6180.0155
PRO 6190.0098
VAL 6200.0041
LEU 6210.0064
SER 6220.0106
LEU 6230.0069
ASN 6240.0072
ILE 6250.0031
THR 6260.0029
CYS 6270.0172
GLU 10.0114
ALA 20.0081
ALA 30.0100
ALA 40.0114
LYS 50.0074
MET 60.0061
GLN 70.0083
ARG 80.0095
LEU 90.0082
VAL 100.0083
LEU 110.0058
LEU 120.0059
LEU 130.0063
ALA 140.0055
ILE 150.0049
SER 160.0030
LEU 170.0021
LEU 180.0012
LEU 190.0028
TYR 200.0040
GLN 210.0049
ASP 220.0061
LEU 230.0068
PRO 240.0058
VAL 250.0054
ARG 260.0073
SER 270.0066
GLU 280.0066
PHE 290.0110
GLU 300.0098
LEU 310.0094
ASP 320.0093
ARG 330.0095
ILE 340.0093
CYS 350.0092
GLY 360.0084
TYR 370.0104
GLY 380.0115
THR 390.0119
ALA 400.0099
ARG 410.0067
CYS 420.0087
ARG 430.0164
LYS 440.0265
LYS 450.0303
CYS 460.0242
ARG 470.0238
SER 480.0278
GLN 490.0231
GLU 500.0220
TYR 510.0245
ARG 520.0187
ILE 530.0183
GLY 540.0131
ARG 550.0083
CYS 560.0123
PRO 570.0239
ASN 580.0266
THR 590.0194
TYR 600.0169
ALA 610.0108
CYS 620.0080
CYS 630.0107
LEU 640.0131
ARG 650.0151
LYS 660.0204
TRP 670.0185
ASP 680.0135
GLU 690.0102
SER 700.0077
LEU 710.0077
LEU 720.0090
ASN 730.0070
ARG 740.0057
THR 750.0079
LYS 760.0062
PRO 770.0071
GLU 780.0074
ALA 790.0079
ALA 800.0083
ALA 810.0127
LYS 820.0111
LYS 830.0081
GLU 840.0064
MET 850.0042
ASN 860.0027
LEU 870.0025
SER 880.0022
VAL 890.0021
GLY 900.0022
LEU 910.0064
GLY 920.0170
GLY 930.0244
GLY 940.0208
SER 950.0109
ASN 960.0029
LEU 970.0030
SER 980.0029
VAL 990.0028
GLY 1000.0030
LEU 1010.0067
GLY 1020.0137
GLU 1030.0151
ILE 1040.0196
GLY 1050.0208
GLY 1060.0175
GLY 1070.0143
SER 1080.0129
LYS 1090.0087
LEU 1100.0088
LEU 1110.0033
ASP 1120.0079
ILE 1130.0072
ASN 1140.0133
LEU 1150.0125
GLY 1160.0158
ARG 1170.0109
GLY 1180.0163
GLY 1190.0215
GLY 1200.0196
SER 1210.0060
MET 1220.0038
VAL 1230.0033
ASP 1240.0016
LEU 1250.0023
THR 1260.0047
PHE 1270.0046
GLY 1280.0046
GLY 1290.0046
VAL 1300.0045
GLY 1310.0071
GLY 1320.0070
GLY 1330.0085
SER 1340.0080
THR 1350.0094
PHE 1360.0081
THR 1370.0077
PHE 1380.0080
PHE 1390.0074
PRO 1400.0078
LEU 1410.0088
VAL 1420.0089
ILE 1430.0139
GLY 1440.0175
GLY 1450.0255
GLY 1460.0164
SER 1470.0146
ASP 1480.0155
ALA 1490.0129
MET 1500.0129
TYR 1510.0078
LEU 1520.0078
GLY 1530.0065
PHE 1540.0069
ALA 1550.0061
ALA 1560.0059
GLY 1570.0092
GLY 1580.0102
GLY 1590.0115
SER 1600.0112
ALA 1610.0103
GLY 1620.0103
GLY 1630.0085
GLU 1640.0069
ASN 1650.0043
HIS 1660.0028
VAL 1670.0028
ALA 1680.0026
PHE 1690.0028
GLY 1700.0028
PRO 1710.0116
GLY 1720.0125
PRO 1730.0113
GLY 1740.0058
VAL 1750.0011
ASP 1760.0027
LEU 1770.0025
THR 1780.0048
PHE 1790.0086
GLY 1800.0115
GLY 1810.0213
VAL 1820.0203
GLN 1830.0141
PHE 1840.0099
ALA 1850.0061
MET 1860.0073
VAL 1870.0107
ASN 1880.0063
ASN 1890.0148
GLY 1900.0132
PRO 1910.0194
GLY 1920.0244
PRO 1930.0168
GLY 1940.0113
GLU 1950.0175
SER 1960.0292
PHE 1970.0212
THR 1980.0063
ALA 1990.0099
GLN 2000.0191
PRO 2010.0216
ALA 2020.0116
ASP 2030.0200
MET 2040.0236
GLN 2050.0072
ALA 2060.0230
GLY 2070.0166
ILE 2080.0136
LYS 2090.0054
GLY 2100.0053
PRO 2110.0127
GLY 2120.0107
PRO 2130.0075
GLY 2140.0046
GLY 2150.0052
SER 2160.0175
ILE 2170.0153
GLN 2180.0100
VAL 2190.0066
ILE 2200.0157
ASN 2210.0214
GLY 2220.0260
SER 2230.0225
THR 2240.0144
ILE 2250.0195
GLY 2260.0039
THR 2270.0022
GLY 2280.0026
SER 2290.0020
LYS 2300.0041
LYS 2310.0307
THR 2320.0418
ILE 2330.0253
LEU 2340.0289
ILE 2350.0258
TYR 2360.0162
SER 2370.0180
ILE 2380.0139
ILE 2390.0137
GLY 2400.0135
VAL 2410.0117
LYS 2420.0092
LYS 2430.0135
GLY 2440.0145
THR 2450.0100
LEU 2460.0093
ALA 2470.0112
TRP 2480.0159
ALA 2490.0200
ARG 2500.0267
THR 2510.0255
GLY 2520.0192
PHE 2530.0366
SER 2540.0449
PRO 2550.0436
ALA 2560.0546
LYS 2570.0391
LYS 2580.0270
LEU 2590.0323
ASN 2600.0508
ALA 2610.0404
GLY 2620.0359
VAL 2630.0446
VAL 2640.0465
ARG 2650.0513
VAL 2660.0244
PHE 2670.0255
PHE 2680.0170
LEU 2690.0199
ASN 2700.0263
GLN 2710.0127
LYS 2720.0103
LYS 2730.0130
ALA 2740.0106
LYS 2750.0114
ASP 2760.0103
VAL 2770.0115
LEU 2780.0143
ARG 2790.0140
LYS 2800.0129
THR 2810.0148
SER 2820.0052
ARG 2830.0065
PRO 2840.0070
MET 2850.0073
VAL 2860.0088
ASP 2870.0067
LEU 2880.0047
THR 2890.0027
PHE 2900.0019
GLY 2910.0020
GLY 2920.0029

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.