CNRS Nantes University US2B US2B
home |  start a new run |  job status |  references&downloads |  examples |  help  

Should you encounter any unexpected behaviour,
please let us know.
elNémo has been relocated.
**Some cleaning from time to time**
Sorry for the inconvenience.


***  TLR_8_simulation  ***

<R2> analysis for 2608260327253941399

---  normal mode 87  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0979
GLU 270.0137
PRO 280.0163
CYS 290.0130
VAL 300.0132
GLU 310.0097
VAL 320.0103
VAL 330.0059
PRO 340.0042
ASN 350.0041
ILE 360.0044
THR 370.0059
TYR 380.0069
GLN 390.0105
CYS 400.0105
MET 410.0139
GLU 420.0163
LEU 430.0152
ASN 440.0149
PHE 450.0114
TYR 460.0104
LYS 470.0095
ILE 480.0069
PRO 490.0069
ASP 500.0057
ASN 510.0083
LEU 520.0056
PRO 530.0054
PHE 540.0063
SER 550.0062
THR 560.0039
LYS 570.0065
ASN 580.0071
LEU 590.0065
ASP 600.0088
LEU 610.0091
SER 620.0116
PHE 630.0135
ASN 640.0120
PRO 650.0125
LEU 660.0102
ARG 670.0113
HIS 680.0102
LEU 690.0087
GLY 700.0079
SER 710.0071
TYR 720.0057
SER 730.0059
PHE 740.0045
PHE 750.0038
SER 760.0033
PHE 770.0043
PRO 780.0061
GLU 790.0068
LEU 800.0065
GLN 810.0085
VAL 820.0075
LEU 830.0073
ASP 840.0081
LEU 850.0088
SER 860.0101
ARG 870.0091
CYS 880.0095
GLU 890.0104
ILE 900.0105
GLN 910.0113
THR 920.0104
ILE 930.0091
GLU 940.0091
ASP 950.0090
GLY 960.0075
ALA 970.0073
TYR 980.0071
GLN 990.0071
SER 1000.0064
LEU 1010.0068
SER 1020.0065
HIS 1030.0065
LEU 1040.0066
SER 1050.0074
THR 1060.0072
LEU 1070.0061
ILE 1080.0061
LEU 1090.0064
THR 1100.0064
GLY 1110.0065
ASN 1120.0072
PRO 1130.0076
ILE 1140.0084
GLN 1150.0093
SER 1160.0104
LEU 1170.0076
ALA 1180.0085
LEU 1190.0080
GLY 1200.0083
ALA 1210.0075
PHE 1220.0065
SER 1230.0067
GLY 1240.0070
LEU 1250.0065
SER 1260.0061
SER 1270.0042
LEU 1280.0043
GLN 1290.0047
LYS 1300.0051
LEU 1310.0049
VAL 1320.0046
ALA 1330.0051
VAL 1340.0062
GLU 1350.0067
THR 1360.0058
ASN 1370.0091
LEU 1380.0082
ALA 1390.0077
SER 1400.0075
LEU 1410.0073
GLU 1420.0088
ASN 1430.0092
PHE 1440.0072
PRO 1450.0058
ILE 1460.0037
GLY 1470.0038
HIS 1480.0028
LEU 1490.0032
LYS 1500.0019
THR 1510.0024
LEU 1520.0031
LYS 1530.0029
GLU 1540.0038
LEU 1550.0044
ASN 1560.0052
VAL 1570.0061
ALA 1580.0065
HIS 1590.0082
ASN 1600.0089
LEU 1610.0099
ILE 1620.0107
GLN 1630.0105
SER 1640.0102
PHE 1650.0087
LYS 1660.0108
LEU 1670.0093
PRO 1680.0107
GLU 1690.0111
TYR 1700.0094
PHE 1710.0075
SER 1720.0075
ASN 1730.0059
LEU 1740.0048
THR 1750.0040
ASN 1760.0022
LEU 1770.0048
GLU 1780.0036
HIS 1790.0039
LEU 1800.0048
ASP 1810.0053
LEU 1820.0064
SER 1830.0061
SER 1840.0076
ASN 1850.0083
LYS 1860.0086
ILE 1870.0077
GLN 1880.0064
SER 1890.0066
ILE 1900.0078
TYR 1910.0101
CYS 1920.0121
THR 1930.0137
ASP 1940.0119
LEU 1950.0116
ARG 1960.0141
VAL 1970.0122
LEU 1980.0103
HIS 1990.0122
GLN 2000.0129
MET 2010.0106
PRO 2020.0104
LEU 2030.0093
LEU 2040.0078
ASN 2050.0055
LEU 2060.0050
SER 2070.0051
LEU 2080.0051
ASP 2090.0049
LEU 2100.0045
SER 2110.0045
LEU 2120.0056
ASN 2130.0052
PRO 2140.0046
MET 2150.0028
ASN 2160.0018
PHE 2170.0031
ILE 2180.0054
GLN 2190.0080
PRO 2200.0095
GLY 2210.0121
ALA 2220.0105
PHE 2230.0100
LYS 2240.0124
GLU 2250.0136
ILE 2260.0116
ARG 2270.0080
LEU 2280.0067
HIS 2290.0059
LYS 2300.0045
LEU 2310.0040
THR 2320.0041
LEU 2330.0030
ARG 2340.0050
ASN 2350.0063
ASN 2360.0047
PHE 2370.0076
ASP 2380.0113
SER 2390.0120
LEU 2400.0114
ASN 2410.0120
VAL 2420.0077
MET 2430.0063
LYS 2440.0084
THR 2450.0075
CYS 2460.0042
ILE 2470.0050
GLN 2480.0078
GLY 2490.0063
LEU 2500.0069
ALA 2510.0103
GLY 2520.0106
LEU 2530.0085
GLU 2540.0084
VAL 2550.0060
HIS 2560.0053
ARG 2570.0042
LEU 2580.0023
VAL 2590.0026
LEU 2600.0026
GLY 2610.0047
GLU 2620.0074
PHE 2630.0106
ARG 2640.0146
ASN 2650.0149
GLU 2660.0117
GLY 2670.0149
ASN 2680.0128
LEU 2690.0120
GLU 2700.0150
LYS 2710.0137
PHE 2720.0105
ASP 2730.0117
LYS 2740.0110
SER 2750.0108
ALA 2760.0078
LEU 2770.0066
GLU 2780.0092
GLY 2790.0079
LEU 2800.0065
CYS 2810.0096
ASN 2820.0101
LEU 2830.0081
THR 2840.0079
ILE 2850.0050
GLU 2860.0047
GLU 2870.0034
PHE 2880.0018
ARG 2890.0022
LEU 2900.0025
ALA 2910.0041
TYR 2920.0075
LEU 2930.0076
ASP 2940.0095
TYR 2950.0090
TYR 2960.0076
LEU 2970.0034
ASP 2980.0034
GLY 2990.0023
ILE 3000.0015
ILE 3010.0025
ASP 3020.0061
LEU 3030.0044
PHE 3040.0029
ASN 3050.0051
CYS 3060.0047
LEU 3070.0027
THR 3080.0036
ASN 3090.0050
VAL 3100.0041
SER 3110.0055
SER 3120.0040
PHE 3130.0030
SER 3140.0031
LEU 3150.0029
VAL 3160.0040
SER 3170.0049
VAL 3180.0035
THR 3190.0036
ILE 3200.0024
GLU 3210.0026
ARG 3220.0034
VAL 3230.0041
LYS 3240.0045
ASP 3250.0038
PHE 3260.0046
SER 3270.0053
TYR 3280.0042
ASN 3290.0050
PHE 3300.0040
GLY 3310.0047
TRP 3320.0041
GLN 3330.0047
HIS 3340.0043
LEU 3350.0041
GLU 3360.0039
LEU 3370.0043
VAL 3380.0047
ASN 3390.0050
CYS 3400.0044
LYS 3410.0048
PHE 3420.0053
GLY 3430.0052
GLN 3440.0058
PHE 3450.0064
PRO 3460.0060
THR 3470.0079
LEU 3480.0070
LYS 3490.0074
LEU 3500.0065
LYS 3510.0071
SER 3520.0066
LEU 3530.0057
LYS 3540.0053
ARG 3550.0043
LEU 3560.0046
THR 3570.0042
PHE 3580.0052
THR 3590.0053
SER 3600.0059
ASN 3610.0064
LYS 3620.0057
GLY 3630.0052
GLY 3640.0056
ASN 3650.0067
ALA 3660.0076
PHE 3670.0097
SER 3680.0104
GLU 3690.0097
VAL 3700.0085
ASP 3710.0090
LEU 3720.0083
PRO 3730.0089
SER 3740.0077
LEU 3750.0063
GLU 3760.0052
PHE 3770.0031
LEU 3780.0034
ASP 3790.0031
LEU 3800.0050
SER 3810.0053
ARG 3820.0067
ASN 3830.0075
GLY 3840.0087
LEU 3850.0083
SER 3860.0092
PHE 3870.0093
LYS 3880.0106
GLY 3890.0092
CYS 3900.0067
CYS 3910.0052
SER 3920.0069
GLN 3930.0080
SER 3940.0105
ASP 3950.0091
PHE 3960.0079
GLY 3970.0101
THR 3980.0086
ILE 3990.0084
SER 4000.0075
LEU 4010.0051
LYS 4020.0039
TYR 4030.0021
LEU 4040.0015
ASP 4050.0031
LEU 4060.0049
SER 4070.0061
PHE 4080.0079
ASN 4090.0082
GLY 4100.0098
VAL 4110.0098
ILE 4120.0082
THR 4130.0087
MET 4140.0065
SER 4150.0070
SER 4160.0050
ASN 4170.0030
PHE 4180.0031
LEU 4190.0057
GLY 4200.0074
LEU 4210.0048
GLU 4220.0058
GLN 4230.0067
LEU 4240.0044
GLU 4250.0062
HIS 4260.0056
LEU 4270.0043
ASP 4280.0056
PHE 4290.0062
GLN 4300.0082
HIS 4310.0095
SER 4320.0078
ASN 4330.0093
LEU 4340.0079
LYS 4350.0087
GLN 4360.0081
MET 4370.0067
SER 4380.0071
GLU 4390.0056
PHE 4400.0035
SER 4410.0039
VAL 4420.0038
PHE 4430.0039
LEU 4440.0035
SER 4450.0038
LEU 4460.0051
ARG 4470.0068
ASN 4480.0078
LEU 4490.0071
ILE 4500.0094
TYR 4510.0092
LEU 4520.0078
ASP 4530.0085
ILE 4540.0080
SER 4550.0094
HIS 4560.0098
THR 4570.0092
HIS 4580.0088
THR 4590.0076
ARG 4600.0075
VAL 4610.0074
ALA 4620.0086
PHE 4630.0080
ASN 4640.0085
GLY 4650.0078
ILE 4660.0079
PHE 4670.0080
ASN 4680.0075
GLY 4690.0074
LEU 4700.0082
SER 4710.0088
SER 4720.0090
LEU 4730.0091
GLU 4740.0102
VAL 4750.0103
LEU 4760.0096
LYS 4770.0094
MET 4780.0089
ALA 4790.0093
GLY 4800.0092
ASN 4810.0084
SER 4820.0077
PHE 4830.0073
GLN 4840.0076
GLU 4850.0065
ASN 4860.0058
PHE 4870.0061
LEU 4880.0061
PRO 4890.0061
ASP 4900.0063
ILE 4910.0075
PHE 4920.0080
THR 4930.0078
GLU 4940.0084
LEU 4950.0086
ARG 4960.0083
ASN 4970.0085
LEU 4980.0083
THR 4990.0084
PHE 5000.0084
LEU 5010.0081
ASP 5020.0069
LEU 5030.0062
SER 5040.0064
GLN 5050.0069
CYS 5060.0065
GLN 5070.0064
LEU 5080.0052
GLU 5090.0049
GLN 5100.0037
LEU 5110.0028
SER 5120.0042
PRO 5130.0023
THR 5140.0033
ALA 5150.0047
PHE 5160.0043
ASN 5170.0043
SER 5180.0065
LEU 5190.0061
SER 5200.0057
SER 5210.0064
LEU 5220.0043
GLN 5230.0041
VAL 5240.0041
LEU 5250.0038
ASN 5260.0044
MET 5270.0021
SER 5280.0030
HIS 5290.0049
ASN 5300.0053
ASN 5310.0066
PHE 5320.0078
PHE 5330.0089
SER 5340.0084
LEU 5350.0074
ASP 5360.0073
THR 5370.0059
PHE 5380.0050
PRO 5390.0031
TYR 5400.0024
LYS 5410.0037
CYS 5420.0033
LEU 5430.0023
ASN 5440.0046
SER 5450.0036
LEU 5460.0010
GLN 5470.0027
VAL 5480.0030
LEU 5490.0036
ASP 5500.0043
TYR 5510.0052
SER 5520.0061
LEU 5530.0067
ASN 5540.0069
HIS 5550.0082
ILE 5560.0083
MET 5570.0088
THR 5580.0096
SER 5590.0104
LYS 5600.0122
LYS 5610.0132
GLN 5620.0125
GLU 5630.0098
LEU 5640.0096
GLN 5650.0094
HIS 5660.0068
PHE 5670.0063
PRO 5680.0052
SER 5690.0078
SER 5700.0054
LEU 5710.0054
ALA 5720.0091
PHE 5730.0090
LEU 5740.0088
ASN 5750.0087
LEU 5760.0085
THR 5770.0089
GLN 5780.0089
ASN 5790.0086
ASP 5800.0080
PHE 5810.0073
ALA 5820.0041
CYS 5830.0030
THR 5840.0042
CYS 5850.0082
GLU 5860.0060
HIS 5870.0048
GLN 5880.0059
SER 5890.0090
PHE 5900.0082
LEU 5910.0050
GLN 5920.0068
TRP 5930.0092
ILE 5940.0071
LYS 5950.0071
ASP 5960.0107
GLN 5970.0100
ARG 5980.0082
GLN 5990.0101
LEU 6000.0117
LEU 6010.0100
VAL 6020.0118
GLU 6030.0104
VAL 6040.0078
GLU 6050.0071
ARG 6060.0086
MET 6070.0080
GLU 6080.0074
CYS 6090.0077
ALA 6100.0130
THR 6110.0133
PRO 6120.0198
SER 6130.0304
ASP 6140.0324
LYS 6150.0212
GLN 6160.0226
GLY 6170.0157
MET 6180.0107
PRO 6190.0044
VAL 6200.0008
LEU 6210.0051
SER 6220.0101
LEU 6230.0091
ASN 6240.0129
ILE 6250.0115
THR 6260.0146
CYS 6270.0317
GLU 10.0105
ALA 20.0058
ALA 30.0074
ALA 40.0078
LYS 50.0067
MET 60.0046
GLN 70.0050
ARG 80.0073
LEU 90.0077
VAL 100.0069
LEU 110.0052
LEU 120.0033
LEU 130.0039
ALA 140.0048
ILE 150.0029
SER 160.0054
LEU 170.0070
LEU 180.0025
LEU 190.0055
TYR 200.0089
GLN 210.0049
ASP 220.0052
LEU 230.0087
PRO 240.0081
VAL 250.0094
ARG 260.0091
SER 270.0072
GLU 280.0067
PHE 290.0057
GLU 300.0044
LEU 310.0042
ASP 320.0041
ARG 330.0035
ILE 340.0030
CYS 350.0029
GLY 360.0020
TYR 370.0022
GLY 380.0022
THR 390.0026
ALA 400.0014
ARG 410.0029
CYS 420.0030
ARG 430.0032
LYS 440.0041
LYS 450.0044
CYS 460.0036
ARG 470.0035
SER 480.0046
GLN 490.0050
GLU 500.0046
TYR 510.0053
ARG 520.0052
ILE 530.0068
GLY 540.0067
ARG 550.0060
CYS 560.0045
PRO 570.0044
ASN 580.0050
THR 590.0058
TYR 600.0052
ALA 610.0043
CYS 620.0041
CYS 630.0041
LEU 640.0048
ARG 650.0050
LYS 660.0057
TRP 670.0067
ASP 680.0067
GLU 690.0085
SER 700.0080
LEU 710.0087
LEU 720.0106
ASN 730.0105
ARG 740.0084
THR 750.0093
LYS 760.0114
PRO 770.0083
GLU 780.0067
ALA 790.0058
ALA 800.0054
ALA 810.0219
LYS 820.0163
LYS 830.0123
GLU 840.0075
MET 850.0031
ASN 860.0064
LEU 870.0068
SER 880.0081
VAL 890.0107
GLY 900.0118
LEU 910.0162
GLY 920.0377
GLY 930.0563
GLY 940.0512
SER 950.0309
ASN 960.0121
LEU 970.0130
SER 980.0111
VAL 990.0111
GLY 1000.0116
LEU 1010.0038
GLY 1020.0049
GLU 1030.0113
ILE 1040.0160
GLY 1050.0226
GLY 1060.0187
GLY 1070.0169
SER 1080.0171
LYS 1090.0142
LEU 1100.0154
LEU 1110.0148
ASP 1120.0238
ILE 1130.0217
ASN 1140.0336
LEU 1150.0315
GLY 1160.0331
ARG 1170.0182
GLY 1180.0298
GLY 1190.0190
GLY 1200.0085
SER 1210.0047
MET 1220.0043
VAL 1230.0054
ASP 1240.0047
LEU 1250.0060
THR 1260.0033
PHE 1270.0018
GLY 1280.0044
GLY 1290.0031
VAL 1300.0056
GLY 1310.0155
GLY 1320.0093
GLY 1330.0044
SER 1340.0110
THR 1350.0162
PHE 1360.0166
THR 1370.0163
PHE 1380.0114
PHE 1390.0113
PRO 1400.0074
LEU 1410.0105
VAL 1420.0033
ILE 1430.0304
GLY 1440.0471
GLY 1450.0706
GLY 1460.0415
SER 1470.0339
ASP 1480.0347
ALA 1490.0237
MET 1500.0218
TYR 1510.0098
LEU 1520.0108
GLY 1530.0143
PHE 1540.0173
ALA 1550.0232
ALA 1560.0296
GLY 1570.0289
GLY 1580.0224
GLY 1590.0210
SER 1600.0201
ALA 1610.0241
GLY 1620.0225
GLY 1630.0194
GLU 1640.0147
ASN 1650.0121
HIS 1660.0065
VAL 1670.0057
ALA 1680.0037
PHE 1690.0064
GLY 1700.0084
PRO 1710.0252
GLY 1720.0256
PRO 1730.0268
GLY 1740.0203
VAL 1750.0157
ASP 1760.0095
LEU 1770.0063
THR 1780.0071
PHE 1790.0158
GLY 1800.0224
GLY 1810.0225
VAL 1820.0117
GLN 1830.0047
PHE 1840.0166
ALA 1850.0274
MET 1860.0346
VAL 1870.0370
ASN 1880.0170
ASN 1890.0158
GLY 1900.0187
PRO 1910.0276
GLY 1920.0311
PRO 1930.0274
GLY 1940.0199
GLU 1950.0158
SER 1960.0144
PHE 1970.0117
THR 1980.0054
ALA 1990.0055
GLN 2000.0124
PRO 2010.0132
ALA 2020.0121
ASP 2030.0150
MET 2040.0090
GLN 2050.0103
ALA 2060.0204
GLY 2070.0039
ILE 2080.0117
LYS 2090.0127
GLY 2100.0319
PRO 2110.0179
GLY 2120.0174
PRO 2130.0109
GLY 2140.0123
GLY 2150.0288
SER 2160.0083
ILE 2170.0108
GLN 2180.0259
VAL 2190.0311
ILE 2200.0404
ASN 2210.0979
GLY 2220.0755
SER 2230.0487
THR 2240.0358
ILE 2250.0363
GLY 2260.0216
THR 2270.0174
GLY 2280.0230
SER 2290.0260
LYS 2300.0160
LYS 2310.0047
THR 2320.0065
ILE 2330.0084
LEU 2340.0131
ILE 2350.0190
TYR 2360.0244
SER 2370.0231
ILE 2380.0197
ILE 2390.0118
GLY 2400.0105
VAL 2410.0118
LYS 2420.0051
LYS 2430.0089
GLY 2440.0152
THR 2450.0126
LEU 2460.0167
ALA 2470.0113
TRP 2480.0115
ALA 2490.0094
ARG 2500.0099
THR 2510.0244
GLY 2520.0225
PHE 2530.0217
SER 2540.0210
PRO 2550.0182
ALA 2560.0317
LYS 2570.0238
LYS 2580.0153
LEU 2590.0116
ASN 2600.0215
ALA 2610.0449
GLY 2620.0274
VAL 2630.0239
VAL 2640.0144
ARG 2650.0113
VAL 2660.0031
PHE 2670.0028
PHE 2680.0035
LEU 2690.0048
ASN 2700.0063
GLN 2710.0054
LYS 2720.0053
LYS 2730.0055
ALA 2740.0055
LYS 2750.0053
ASP 2760.0059
VAL 2770.0058
LEU 2780.0068
ARG 2790.0072
LYS 2800.0064
THR 2810.0075
SER 2820.0087
ARG 2830.0060
PRO 2840.0060
MET 2850.0050
VAL 2860.0027
ASP 2870.0015
LEU 2880.0022
THR 2890.0022
PHE 2900.0032
GLY 2910.0034
GLY 2920.0016

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.