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***  TLR_8_simulation  ***

<R2> analysis for 2608260327253941399

---  normal mode 88  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0666
GLU 270.0067
PRO 280.0078
CYS 290.0059
VAL 300.0051
GLU 310.0032
VAL 320.0044
VAL 330.0043
PRO 340.0036
ASN 350.0043
ILE 360.0044
THR 370.0037
TYR 380.0034
GLN 390.0052
CYS 400.0058
MET 410.0077
GLU 420.0092
LEU 430.0088
ASN 440.0087
PHE 450.0069
TYR 460.0066
LYS 470.0067
ILE 480.0050
PRO 490.0048
ASP 500.0046
ASN 510.0050
LEU 520.0036
PRO 530.0038
PHE 540.0041
SER 550.0042
THR 560.0028
LYS 570.0032
ASN 580.0034
LEU 590.0032
ASP 600.0044
LEU 610.0050
SER 620.0064
PHE 630.0074
ASN 640.0067
PRO 650.0068
LEU 660.0054
ARG 670.0053
HIS 680.0048
LEU 690.0042
GLY 700.0039
SER 710.0034
TYR 720.0033
SER 730.0037
PHE 740.0024
PHE 750.0018
SER 760.0019
PHE 770.0021
PRO 780.0020
GLU 790.0023
LEU 800.0022
GLN 810.0030
VAL 820.0026
LEU 830.0028
ASP 840.0034
LEU 850.0041
SER 860.0048
ARG 870.0047
CYS 880.0046
GLU 890.0047
ILE 900.0047
GLN 910.0048
THR 920.0048
ILE 930.0042
GLU 940.0044
ASP 950.0044
GLY 960.0037
ALA 970.0037
TYR 980.0031
GLN 990.0033
SER 1000.0027
LEU 1010.0024
SER 1020.0030
HIS 1030.0023
LEU 1040.0022
SER 1050.0025
THR 1060.0022
LEU 1070.0023
ILE 1080.0021
LEU 1090.0025
THR 1100.0022
GLY 1110.0025
ASN 1120.0033
PRO 1130.0034
ILE 1140.0037
GLN 1150.0041
SER 1160.0045
LEU 1170.0037
ALA 1180.0045
LEU 1190.0045
GLY 1200.0045
ALA 1210.0035
PHE 1220.0031
SER 1230.0040
GLY 1240.0040
LEU 1250.0032
SER 1260.0037
SER 1270.0039
LEU 1280.0032
GLN 1290.0033
LYS 1300.0025
LEU 1310.0018
VAL 1320.0017
ALA 1330.0014
VAL 1340.0012
GLU 1350.0007
THR 1360.0008
ASN 1370.0025
LEU 1380.0024
ALA 1390.0019
SER 1400.0022
LEU 1410.0026
GLU 1420.0029
ASN 1430.0033
PHE 1440.0027
PRO 1450.0028
ILE 1460.0024
GLY 1470.0026
HIS 1480.0032
LEU 1490.0030
LYS 1500.0033
THR 1510.0035
LEU 1520.0034
LYS 1530.0036
GLU 1540.0032
LEU 1550.0027
ASN 1560.0025
VAL 1570.0029
ALA 1580.0030
HIS 1590.0029
ASN 1600.0027
LEU 1610.0027
ILE 1620.0046
GLN 1630.0045
SER 1640.0046
PHE 1650.0043
LYS 1660.0051
LEU 1670.0040
PRO 1680.0046
GLU 1690.0046
TYR 1700.0039
PHE 1710.0029
SER 1720.0028
ASN 1730.0027
LEU 1740.0024
THR 1750.0021
ASN 1760.0024
LEU 1770.0026
GLU 1780.0026
HIS 1790.0026
LEU 1800.0028
ASP 1810.0028
LEU 1820.0031
SER 1830.0031
SER 1840.0032
ASN 1850.0034
LYS 1860.0035
ILE 1870.0047
GLN 1880.0046
SER 1890.0046
ILE 1900.0050
TYR 1910.0062
CYS 1920.0069
THR 1930.0076
ASP 1940.0064
LEU 1950.0060
ARG 1960.0072
VAL 1970.0060
LEU 1980.0050
HIS 1990.0065
GLN 2000.0066
MET 2010.0051
PRO 2020.0056
LEU 2030.0051
LEU 2040.0036
ASN 2050.0025
LEU 2060.0014
SER 2070.0010
LEU 2080.0017
ASP 2090.0021
LEU 2100.0027
SER 2110.0028
LEU 2120.0031
ASN 2130.0035
PRO 2140.0035
MET 2150.0032
ASN 2160.0032
PHE 2170.0043
ILE 2180.0045
GLN 2190.0054
PRO 2200.0056
GLY 2210.0068
ALA 2220.0063
PHE 2230.0055
LYS 2240.0069
GLU 2250.0072
ILE 2260.0056
ARG 2270.0040
LEU 2280.0027
HIS 2290.0026
LYS 2300.0022
LEU 2310.0018
THR 2320.0028
LEU 2330.0028
ARG 2340.0032
ASN 2350.0035
ASN 2360.0032
PHE 2370.0037
ASP 2380.0040
SER 2390.0042
LEU 2400.0046
ASN 2410.0042
VAL 2420.0039
MET 2430.0041
LYS 2440.0044
THR 2450.0040
CYS 2460.0041
ILE 2470.0039
GLN 2480.0042
GLY 2490.0044
LEU 2500.0045
ALA 2510.0054
GLY 2520.0059
LEU 2530.0044
GLU 2540.0044
VAL 2550.0035
HIS 2560.0041
ARG 2570.0042
LEU 2580.0036
VAL 2590.0042
LEU 2600.0040
GLY 2610.0046
GLU 2620.0041
PHE 2630.0033
ARG 2640.0039
ASN 2650.0033
GLU 2660.0034
GLY 2670.0039
ASN 2680.0042
LEU 2690.0045
GLU 2700.0050
LYS 2710.0055
PHE 2720.0056
ASP 2730.0054
LYS 2740.0053
SER 2750.0053
ALA 2760.0054
LEU 2770.0050
GLU 2780.0049
GLY 2790.0047
LEU 2800.0049
CYS 2810.0052
ASN 2820.0056
LEU 2830.0046
THR 2840.0043
ILE 2850.0041
GLU 2860.0047
GLU 2870.0049
PHE 2880.0046
ARG 2890.0050
LEU 2900.0049
ALA 2910.0058
TYR 2920.0055
LEU 2930.0055
ASP 2940.0055
TYR 2950.0055
TYR 2960.0054
LEU 2970.0054
ASP 2980.0047
GLY 2990.0037
ILE 3000.0034
ILE 3010.0025
ASP 3020.0034
LEU 3030.0039
PHE 3040.0040
ASN 3050.0035
CYS 3060.0036
LEU 3070.0039
THR 3080.0031
ASN 3090.0043
VAL 3100.0048
SER 3110.0050
SER 3120.0051
PHE 3130.0044
SER 3140.0049
LEU 3150.0049
VAL 3160.0059
SER 3170.0066
VAL 3180.0058
THR 3190.0056
ILE 3200.0046
GLU 3210.0049
ARG 3220.0049
VAL 3230.0036
LYS 3240.0038
ASP 3250.0031
PHE 3260.0024
SER 3270.0035
TYR 3280.0030
ASN 3290.0041
PHE 3300.0037
GLY 3310.0055
TRP 3320.0045
GLN 3330.0053
HIS 3340.0046
LEU 3350.0033
GLU 3360.0035
LEU 3370.0035
VAL 3380.0048
ASN 3390.0057
CYS 3400.0050
LYS 3410.0055
PHE 3420.0047
GLY 3430.0055
GLN 3440.0051
PHE 3450.0042
PRO 3460.0035
THR 3470.0050
LEU 3480.0043
LYS 3490.0061
LEU 3500.0062
LYS 3510.0084
SER 3520.0074
LEU 3530.0056
LYS 3540.0057
ARG 3550.0041
LEU 3560.0024
THR 3570.0025
PHE 3580.0022
THR 3590.0041
SER 3600.0060
ASN 3610.0054
LYS 3620.0054
GLY 3630.0055
GLY 3640.0057
ASN 3650.0058
ALA 3660.0062
PHE 3670.0068
SER 3680.0081
GLU 3690.0083
VAL 3700.0073
ASP 3710.0094
LEU 3720.0086
PRO 3730.0102
SER 3740.0097
LEU 3750.0078
GLU 3760.0073
PHE 3770.0045
LEU 3780.0023
ASP 3790.0008
LEU 3800.0023
SER 3810.0040
ARG 3820.0066
ASN 3830.0064
GLY 3840.0080
LEU 3850.0072
SER 3860.0084
PHE 3870.0090
LYS 3880.0115
GLY 3890.0112
CYS 3900.0081
CYS 3910.0072
SER 3920.0100
GLN 3930.0112
SER 3940.0129
ASP 3950.0101
PHE 3960.0089
GLY 3970.0119
THR 3980.0113
ILE 3990.0116
SER 4000.0109
LEU 4010.0084
LYS 4020.0066
TYR 4030.0041
LEU 4040.0021
ASP 4050.0009
LEU 4060.0036
SER 4070.0057
PHE 4080.0075
ASN 4090.0077
GLY 4100.0097
VAL 4110.0105
ILE 4120.0092
THR 4130.0107
MET 4140.0091
SER 4150.0111
SER 4160.0099
ASN 4170.0074
PHE 4180.0073
LEU 4190.0099
GLY 4200.0109
LEU 4210.0084
GLU 4220.0078
GLN 4230.0084
LEU 4240.0058
GLU 4250.0054
HIS 4260.0038
LEU 4270.0018
ASP 4280.0025
PHE 4290.0043
GLN 4300.0055
HIS 4310.0074
SER 4320.0074
ASN 4330.0093
LEU 4340.0083
LYS 4350.0101
GLN 4360.0102
MET 4370.0060
SER 4380.0065
GLU 4390.0073
PHE 4400.0053
SER 4410.0036
VAL 4420.0050
PHE 4430.0038
LEU 4440.0040
SER 4450.0051
LEU 4460.0047
ARG 4470.0048
ASN 4480.0063
LEU 4490.0048
ILE 4500.0061
TYR 4510.0049
LEU 4520.0037
ASP 4530.0039
ILE 4540.0044
SER 4550.0052
HIS 4560.0064
THR 4570.0075
HIS 4580.0069
THR 4590.0052
ARG 4600.0041
VAL 4610.0033
ALA 4620.0051
PHE 4630.0045
ASN 4640.0054
GLY 4650.0051
ILE 4660.0039
PHE 4670.0047
ASN 4680.0055
GLY 4690.0059
LEU 4700.0065
SER 4710.0083
SER 4720.0088
LEU 4730.0074
GLU 4740.0079
VAL 4750.0063
LEU 4760.0050
LYS 4770.0035
MET 4780.0032
ALA 4790.0033
GLY 4800.0039
ASN 4810.0037
SER 4820.0034
PHE 4830.0041
GLN 4840.0059
GLU 4850.0077
ASN 4860.0065
PHE 4870.0073
LEU 4880.0057
PRO 4890.0076
ASP 4900.0085
ILE 4910.0078
PHE 4920.0079
THR 4930.0103
GLU 4940.0105
LEU 4950.0094
ARG 4960.0112
ASN 4970.0108
LEU 4980.0085
THR 4990.0081
PHE 5000.0060
LEU 5010.0043
ASP 5020.0020
LEU 5030.0007
SER 5040.0019
GLN 5050.0030
CYS 5060.0022
GLN 5070.0051
LEU 5080.0045
GLU 5090.0066
GLN 5100.0067
LEU 5110.0057
SER 5120.0094
PRO 5130.0091
THR 5140.0096
ALA 5150.0077
PHE 5160.0066
ASN 5170.0094
SER 5180.0106
LEU 5190.0088
SER 5200.0097
SER 5210.0097
LEU 5220.0067
GLN 5230.0062
VAL 5240.0046
LEU 5250.0025
ASN 5260.0021
MET 5270.0030
SER 5280.0045
HIS 5290.0053
ASN 5300.0048
ASN 5310.0060
PHE 5320.0049
PHE 5330.0055
SER 5340.0053
LEU 5350.0049
ASP 5360.0046
THR 5370.0047
PHE 5380.0048
PRO 5390.0044
TYR 5400.0025
LYS 5410.0023
CYS 5420.0055
LEU 5430.0045
ASN 5440.0057
SER 5450.0060
LEU 5460.0044
GLN 5470.0049
VAL 5480.0048
LEU 5490.0040
ASP 5500.0048
TYR 5510.0051
SER 5520.0062
LEU 5530.0066
ASN 5540.0061
HIS 5550.0062
ILE 5560.0058
MET 5570.0060
THR 5580.0065
SER 5590.0072
LYS 5600.0080
LYS 5610.0091
GLN 5620.0093
GLU 5630.0078
LEU 5640.0074
GLN 5650.0072
HIS 5660.0056
PHE 5670.0039
PRO 5680.0028
SER 5690.0039
SER 5700.0041
LEU 5710.0045
ALA 5720.0053
PHE 5730.0056
LEU 5740.0054
ASN 5750.0061
LEU 5760.0062
THR 5770.0061
GLN 5780.0059
ASN 5790.0058
ASP 5800.0054
PHE 5810.0050
ALA 5820.0069
CYS 5830.0046
THR 5840.0070
CYS 5850.0059
GLU 5860.0095
HIS 5870.0066
GLN 5880.0049
SER 5890.0078
PHE 5900.0077
LEU 5910.0048
GLN 5920.0067
TRP 5930.0084
ILE 5940.0067
LYS 5950.0073
ASP 5960.0097
GLN 5970.0082
ARG 5980.0065
GLN 5990.0072
LEU 6000.0071
LEU 6010.0055
VAL 6020.0071
GLU 6030.0064
VAL 6040.0049
GLU 6050.0047
ARG 6060.0043
MET 6070.0033
GLU 6080.0024
CYS 6090.0048
ALA 6100.0078
THR 6110.0109
PRO 6120.0153
SER 6130.0190
ASP 6140.0194
LYS 6150.0131
GLN 6160.0121
GLY 6170.0090
MET 6180.0079
PRO 6190.0053
VAL 6200.0023
LEU 6210.0064
SER 6220.0093
LEU 6230.0062
ASN 6240.0086
ILE 6250.0052
THR 6260.0071
CYS 6270.0081
GLU 10.0153
ALA 20.0089
ALA 30.0091
ALA 40.0124
LYS 50.0099
MET 60.0061
GLN 70.0087
ARG 80.0116
LEU 90.0107
VAL 100.0107
LEU 110.0070
LEU 120.0058
LEU 130.0068
ALA 140.0068
ILE 150.0048
SER 160.0047
LEU 170.0057
LEU 180.0048
LEU 190.0062
TYR 200.0080
GLN 210.0078
ASP 220.0087
LEU 230.0104
PRO 240.0107
VAL 250.0107
ARG 260.0125
SER 270.0088
GLU 280.0078
PHE 290.0083
GLU 300.0062
LEU 310.0042
ASP 320.0039
ARG 330.0048
ILE 340.0040
CYS 350.0033
GLY 360.0039
TYR 370.0041
GLY 380.0047
THR 390.0050
ALA 400.0048
ARG 410.0036
CYS 420.0031
ARG 430.0050
LYS 440.0088
LYS 450.0103
CYS 460.0086
ARG 470.0089
SER 480.0108
GLN 490.0094
GLU 500.0086
TYR 510.0094
ARG 520.0064
ILE 530.0068
GLY 540.0049
ARG 550.0041
CYS 560.0055
PRO 570.0097
ASN 580.0102
THR 590.0087
TYR 600.0064
ALA 610.0032
CYS 620.0031
CYS 630.0039
LEU 640.0052
ARG 650.0063
LYS 660.0096
TRP 670.0091
ASP 680.0075
GLU 690.0061
SER 700.0058
LEU 710.0060
LEU 720.0068
ASN 730.0059
ARG 740.0043
THR 750.0051
LYS 760.0094
PRO 770.0094
GLU 780.0082
ALA 790.0116
ALA 800.0130
ALA 810.0206
LYS 820.0190
LYS 830.0155
GLU 840.0142
MET 850.0109
ASN 860.0094
LEU 870.0078
SER 880.0070
VAL 890.0054
GLY 900.0051
LEU 910.0037
GLY 920.0069
GLY 930.0158
GLY 940.0193
SER 950.0132
ASN 960.0080
LEU 970.0053
SER 980.0070
VAL 990.0060
GLY 1000.0084
LEU 1010.0084
GLY 1020.0138
GLU 1030.0186
ILE 1040.0206
GLY 1050.0251
GLY 1060.0176
GLY 1070.0138
SER 1080.0113
LYS 1090.0081
LEU 1100.0101
LEU 1110.0039
ASP 1120.0049
ILE 1130.0051
ASN 1140.0065
LEU 1150.0076
GLY 1160.0133
ARG 1170.0135
GLY 1180.0163
GLY 1190.0137
GLY 1200.0113
SER 1210.0075
MET 1220.0070
VAL 1230.0046
ASP 1240.0055
LEU 1250.0051
THR 1260.0062
PHE 1270.0068
GLY 1280.0085
GLY 1290.0103
VAL 1300.0112
GLY 1310.0178
GLY 1320.0133
GLY 1330.0083
SER 1340.0076
THR 1350.0063
PHE 1360.0072
THR 1370.0061
PHE 1380.0044
PHE 1390.0036
PRO 1400.0021
LEU 1410.0045
VAL 1420.0033
ILE 1430.0023
GLY 1440.0034
GLY 1450.0038
GLY 1460.0055
SER 1470.0054
ASP 1480.0056
ALA 1490.0056
MET 1500.0056
TYR 1510.0061
LEU 1520.0067
GLY 1530.0079
PHE 1540.0087
ALA 1550.0103
ALA 1560.0131
GLY 1570.0111
GLY 1580.0079
GLY 1590.0077
SER 1600.0098
ALA 1610.0071
GLY 1620.0084
GLY 1630.0090
GLU 1640.0080
ASN 1650.0061
HIS 1660.0067
VAL 1670.0064
ALA 1680.0061
PHE 1690.0056
GLY 1700.0059
PRO 1710.0063
GLY 1720.0074
PRO 1730.0115
GLY 1740.0101
VAL 1750.0068
ASP 1760.0053
LEU 1770.0030
THR 1780.0059
PHE 1790.0079
GLY 1800.0125
GLY 1810.0219
VAL 1820.0190
GLN 1830.0127
PHE 1840.0068
ALA 1850.0031
MET 1860.0073
VAL 1870.0087
ASN 1880.0083
ASN 1890.0122
GLY 1900.0128
PRO 1910.0141
GLY 1920.0200
PRO 1930.0174
GLY 1940.0116
GLU 1950.0154
SER 1960.0251
PHE 1970.0174
THR 1980.0083
ALA 1990.0086
GLN 2000.0139
PRO 2010.0168
ALA 2020.0068
ASP 2030.0154
MET 2040.0193
GLN 2050.0055
ALA 2060.0233
GLY 2070.0172
ILE 2080.0137
LYS 2090.0064
GLY 2100.0032
PRO 2110.0189
GLY 2120.0298
PRO 2130.0153
GLY 2140.0349
GLY 2150.0418
SER 2160.0201
ILE 2170.0256
GLN 2180.0211
VAL 2190.0229
ILE 2200.0211
ASN 2210.0423
GLY 2220.0277
SER 2230.0143
THR 2240.0213
ILE 2250.0382
GLY 2260.0306
THR 2270.0336
GLY 2280.0441
SER 2290.0479
LYS 2300.0448
LYS 2310.0525
THR 2320.0601
ILE 2330.0410
LEU 2340.0408
ILE 2350.0519
TYR 2360.0347
SER 2370.0280
ILE 2380.0274
ILE 2390.0158
GLY 2400.0292
VAL 2410.0129
LYS 2420.0114
LYS 2430.0152
GLY 2440.0194
THR 2450.0173
LEU 2460.0283
ALA 2470.0182
TRP 2480.0050
ALA 2490.0123
ARG 2500.0224
THR 2510.0311
GLY 2520.0328
PHE 2530.0480
SER 2540.0556
PRO 2550.0666
ALA 2560.0641
LYS 2570.0618
LYS 2580.0374
LEU 2590.0232
ASN 2600.0440
ALA 2610.0309
GLY 2620.0175
VAL 2630.0357
VAL 2640.0441
ARG 2650.0588
VAL 2660.0263
PHE 2670.0270
PHE 2680.0150
LEU 2690.0208
ASN 2700.0077
GLN 2710.0081
LYS 2720.0048
LYS 2730.0079
ALA 2740.0097
LYS 2750.0066
ASP 2760.0062
VAL 2770.0091
LEU 2780.0066
ARG 2790.0042
LYS 2800.0081
THR 2810.0163
SER 2820.0195
ARG 2830.0084
PRO 2840.0108
MET 2850.0159
VAL 2860.0157
ASP 2870.0169
LEU 2880.0115
THR 2890.0111
PHE 2900.0096
GLY 2910.0154
GLY 2920.0151

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elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.