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***  TLR_8_simulation  ***

<R2> analysis for 2608260327253941399

---  normal mode 89  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0757
GLU 270.0134
PRO 280.0102
CYS 290.0063
VAL 300.0085
GLU 310.0109
VAL 320.0113
VAL 330.0106
PRO 340.0116
ASN 350.0083
ILE 360.0029
THR 370.0034
TYR 380.0020
GLN 390.0025
CYS 400.0038
MET 410.0051
GLU 420.0065
LEU 430.0058
ASN 440.0078
PHE 450.0088
TYR 460.0113
LYS 470.0141
ILE 480.0123
PRO 490.0102
ASP 500.0140
ASN 510.0133
LEU 520.0101
PRO 530.0096
PHE 540.0107
SER 550.0065
THR 560.0045
LYS 570.0055
ASN 580.0058
LEU 590.0061
ASP 600.0063
LEU 610.0075
SER 620.0082
PHE 630.0089
ASN 640.0090
PRO 650.0105
LEU 660.0108
ARG 670.0094
HIS 680.0092
LEU 690.0094
GLY 700.0092
SER 710.0092
TYR 720.0120
SER 730.0106
PHE 740.0102
PHE 750.0113
SER 760.0103
PHE 770.0104
PRO 780.0118
GLU 790.0095
LEU 800.0093
GLN 810.0099
VAL 820.0088
LEU 830.0086
ASP 840.0082
LEU 850.0082
SER 860.0080
ARG 870.0084
CYS 880.0083
GLU 890.0081
ILE 900.0078
GLN 910.0075
THR 920.0069
ILE 930.0075
GLU 940.0073
ASP 950.0074
GLY 960.0083
ALA 970.0091
TYR 980.0095
GLN 990.0103
SER 1000.0104
LEU 1010.0101
SER 1020.0109
HIS 1030.0108
LEU 1040.0096
SER 1050.0100
THR 1060.0088
LEU 1070.0071
ILE 1080.0067
LEU 1090.0056
THR 1100.0056
GLY 1110.0048
ASN 1120.0057
PRO 1130.0049
ILE 1140.0045
GLN 1150.0038
SER 1160.0036
LEU 1170.0035
ALA 1180.0031
LEU 1190.0036
GLY 1200.0048
ALA 1210.0052
PHE 1220.0063
SER 1230.0071
GLY 1240.0078
LEU 1250.0076
SER 1260.0086
SER 1270.0092
LEU 1280.0074
GLN 1290.0079
LYS 1300.0069
LEU 1310.0048
VAL 1320.0039
ALA 1330.0028
VAL 1340.0040
GLU 1350.0041
THR 1360.0027
ASN 1370.0039
LEU 1380.0042
ALA 1390.0058
SER 1400.0063
LEU 1410.0059
GLU 1420.0059
ASN 1430.0047
PHE 1440.0022
PRO 1450.0023
ILE 1460.0012
GLY 1470.0031
HIS 1480.0031
LEU 1490.0030
LYS 1500.0025
THR 1510.0046
LEU 1520.0034
LYS 1530.0047
GLU 1540.0042
LEU 1550.0029
ASN 1560.0035
VAL 1570.0038
ALA 1580.0050
HIS 1590.0059
ASN 1600.0056
LEU 1610.0063
ILE 1620.0071
GLN 1630.0072
SER 1640.0080
PHE 1650.0084
LYS 1660.0091
LEU 1670.0078
PRO 1680.0080
GLU 1690.0081
TYR 1700.0069
PHE 1710.0062
SER 1720.0061
ASN 1730.0045
LEU 1740.0023
THR 1750.0019
ASN 1760.0021
LEU 1770.0018
GLU 1780.0027
HIS 1790.0026
LEU 1800.0029
ASP 1810.0035
LEU 1820.0045
SER 1830.0053
SER 1840.0061
ASN 1850.0060
LYS 1860.0065
ILE 1870.0088
GLN 1880.0089
SER 1890.0100
ILE 1900.0109
TYR 1910.0122
CYS 1920.0114
THR 1930.0113
ASP 1940.0112
LEU 1950.0108
ARG 1960.0107
VAL 1970.0095
LEU 1980.0090
HIS 1990.0096
GLN 2000.0091
MET 2010.0082
PRO 2020.0065
LEU 2030.0061
LEU 2040.0049
ASN 2050.0045
LEU 2060.0037
SER 2070.0023
LEU 2080.0030
ASP 2090.0042
LEU 2100.0052
SER 2110.0061
LEU 2120.0074
ASN 2130.0084
PRO 2140.0085
MET 2150.0091
ASN 2160.0096
PHE 2170.0120
ILE 2180.0124
GLN 2190.0122
PRO 2200.0124
GLY 2210.0127
ALA 2220.0124
PHE 2230.0113
LYS 2240.0114
GLU 2250.0105
ILE 2260.0101
ARG 2270.0060
LEU 2280.0047
HIS 2290.0038
LYS 2300.0038
LEU 2310.0043
THR 2320.0066
LEU 2330.0077
ARG 2340.0081
ASN 2350.0096
ASN 2360.0104
PHE 2370.0140
ASP 2380.0148
SER 2390.0143
LEU 2400.0135
ASN 2410.0142
VAL 2420.0144
MET 2430.0136
LYS 2440.0136
THR 2450.0142
CYS 2460.0139
ILE 2470.0129
GLN 2480.0134
GLY 2490.0137
LEU 2500.0125
ALA 2510.0124
GLY 2520.0112
LEU 2530.0091
GLU 2540.0069
VAL 2550.0052
HIS 2560.0038
ARG 2570.0044
LEU 2580.0049
VAL 2590.0064
LEU 2600.0073
GLY 2610.0085
GLU 2620.0099
PHE 2630.0108
ARG 2640.0134
ASN 2650.0124
GLU 2660.0109
GLY 2670.0148
ASN 2680.0131
LEU 2690.0126
GLU 2700.0124
LYS 2710.0116
PHE 2720.0113
ASP 2730.0110
LYS 2740.0107
SER 2750.0126
ALA 2760.0122
LEU 2770.0097
GLU 2780.0112
GLY 2790.0123
LEU 2800.0099
CYS 2810.0101
ASN 2820.0115
LEU 2830.0090
THR 2840.0061
ILE 2850.0043
GLU 2860.0036
GLU 2870.0043
PHE 2880.0040
ARG 2890.0054
LEU 2900.0057
ALA 2910.0078
TYR 2920.0108
LEU 2930.0100
ASP 2940.0101
TYR 2950.0091
TYR 2960.0069
LEU 2970.0045
ASP 2980.0041
GLY 2990.0035
ILE 3000.0036
ILE 3010.0045
ASP 3020.0062
LEU 3030.0057
PHE 3040.0048
ASN 3050.0051
CYS 3060.0061
LEU 3070.0035
THR 3080.0019
ASN 3090.0036
VAL 3100.0049
SER 3110.0060
SER 3120.0059
PHE 3130.0051
SER 3140.0060
LEU 3150.0056
VAL 3160.0070
SER 3170.0078
VAL 3180.0062
THR 3190.0047
ILE 3200.0039
GLU 3210.0037
ARG 3220.0035
VAL 3230.0047
LYS 3240.0054
ASP 3250.0037
PHE 3260.0059
SER 3270.0046
TYR 3280.0037
ASN 3290.0048
PHE 3300.0051
GLY 3310.0066
TRP 3320.0071
GLN 3330.0083
HIS 3340.0082
LEU 3350.0074
GLU 3360.0074
LEU 3370.0083
VAL 3380.0090
ASN 3390.0091
CYS 3400.0082
LYS 3410.0082
PHE 3420.0085
GLY 3430.0081
GLN 3440.0088
PHE 3450.0097
PRO 3460.0099
THR 3470.0089
LEU 3480.0094
LYS 3490.0096
LEU 3500.0100
LYS 3510.0107
SER 3520.0108
LEU 3530.0100
LYS 3540.0093
ARG 3550.0087
LEU 3560.0085
THR 3570.0088
PHE 3580.0091
THR 3590.0087
SER 3600.0090
ASN 3610.0098
LYS 3620.0095
GLY 3630.0100
GLY 3640.0102
ASN 3650.0097
ALA 3660.0100
PHE 3670.0098
SER 3680.0114
GLU 3690.0115
VAL 3700.0116
ASP 3710.0122
LEU 3720.0117
PRO 3730.0119
SER 3740.0115
LEU 3750.0103
GLU 3760.0091
PHE 3770.0076
LEU 3780.0074
ASP 3790.0069
LEU 3800.0068
SER 3810.0056
ARG 3820.0063
ASN 3830.0070
GLY 3840.0048
LEU 3850.0063
SER 3860.0069
PHE 3870.0072
LYS 3880.0111
GLY 3890.0123
CYS 3900.0087
CYS 3910.0080
SER 3920.0104
GLN 3930.0112
SER 3940.0144
ASP 3950.0119
PHE 3960.0114
GLY 3970.0129
THR 3980.0112
ILE 3990.0101
SER 4000.0087
LEU 4010.0070
LYS 4020.0039
TYR 4030.0032
LEU 4040.0028
ASP 4050.0024
LEU 4060.0019
SER 4070.0027
PHE 4080.0037
ASN 4090.0013
GLY 4100.0020
VAL 4110.0052
ILE 4120.0058
THR 4130.0097
MET 4140.0107
SER 4150.0134
SER 4160.0122
ASN 4170.0117
PHE 4180.0088
LEU 4190.0111
GLY 4200.0096
LEU 4210.0059
GLU 4220.0071
GLN 4230.0034
LEU 4240.0029
GLU 4250.0035
HIS 4260.0038
LEU 4270.0043
ASP 4280.0050
PHE 4290.0054
GLN 4300.0077
HIS 4310.0079
SER 4320.0049
ASN 4330.0067
LEU 4340.0080
LYS 4350.0107
GLN 4360.0134
MET 4370.0109
SER 4380.0137
GLU 4390.0140
PHE 4400.0132
SER 4410.0116
VAL 4420.0112
PHE 4430.0100
LEU 4440.0114
SER 4450.0096
LEU 4460.0081
ARG 4470.0098
ASN 4480.0079
LEU 4490.0083
ILE 4500.0093
TYR 4510.0094
LEU 4520.0098
ASP 4530.0102
ILE 4540.0106
SER 4550.0118
HIS 4560.0121
THR 4570.0117
HIS 4580.0114
THR 4590.0108
ARG 4600.0102
VAL 4610.0095
ALA 4620.0094
PHE 4630.0101
ASN 4640.0105
GLY 4650.0113
ILE 4660.0112
PHE 4670.0114
ASN 4680.0118
GLY 4690.0110
LEU 4700.0107
SER 4710.0112
SER 4720.0110
LEU 4730.0110
GLU 4740.0109
VAL 4750.0111
LEU 4760.0111
LYS 4770.0107
MET 4780.0108
ALA 4790.0109
GLY 4800.0114
ASN 4810.0113
SER 4820.0096
PHE 4830.0087
GLN 4840.0100
GLU 4850.0102
ASN 4860.0086
PHE 4870.0075
LEU 4880.0058
PRO 4890.0063
ASP 4900.0060
ILE 4910.0089
PHE 4920.0078
THR 4930.0071
GLU 4940.0085
LEU 4950.0092
ARG 4960.0089
ASN 4970.0097
LEU 4980.0090
THR 4990.0093
PHE 5000.0091
LEU 5010.0079
ASP 5020.0075
LEU 5030.0071
SER 5040.0071
GLN 5050.0084
CYS 5060.0088
GLN 5070.0082
LEU 5080.0065
GLU 5090.0074
GLN 5100.0072
LEU 5110.0054
SER 5120.0055
PRO 5130.0054
THR 5140.0038
ALA 5150.0021
PHE 5160.0018
ASN 5170.0016
SER 5180.0027
LEU 5190.0050
SER 5200.0068
SER 5210.0092
LEU 5220.0061
GLN 5230.0079
VAL 5240.0064
LEU 5250.0035
ASN 5260.0038
MET 5270.0023
SER 5280.0031
HIS 5290.0051
ASN 5300.0057
ASN 5310.0071
PHE 5320.0058
PHE 5330.0070
SER 5340.0076
LEU 5350.0070
ASP 5360.0083
THR 5370.0073
PHE 5380.0084
PRO 5390.0056
TYR 5400.0056
LYS 5410.0084
CYS 5420.0070
LEU 5430.0068
ASN 5440.0097
SER 5450.0099
LEU 5460.0077
GLN 5470.0077
VAL 5480.0055
LEU 5490.0039
ASP 5500.0032
TYR 5510.0040
SER 5520.0044
LEU 5530.0044
ASN 5540.0055
HIS 5550.0062
ILE 5560.0067
MET 5570.0058
THR 5580.0073
SER 5590.0088
LYS 5600.0095
LYS 5610.0110
GLN 5620.0114
GLU 5630.0109
LEU 5640.0094
GLN 5650.0116
HIS 5660.0112
PHE 5670.0086
PRO 5680.0092
SER 5690.0115
SER 5700.0107
LEU 5710.0084
ALA 5720.0045
PHE 5730.0050
LEU 5740.0053
ASN 5750.0062
LEU 5760.0067
THR 5770.0082
GLN 5780.0073
ASN 5790.0071
ASP 5800.0064
PHE 5810.0069
ALA 5820.0081
CYS 5830.0083
THR 5840.0105
CYS 5850.0135
GLU 5860.0124
HIS 5870.0066
GLN 5880.0091
SER 5890.0093
PHE 5900.0079
LEU 5910.0089
GLN 5920.0089
TRP 5930.0089
ILE 5940.0103
LYS 5950.0126
ASP 5960.0129
GLN 5970.0091
ARG 5980.0090
GLN 5990.0102
LEU 6000.0099
LEU 6010.0090
VAL 6020.0110
GLU 6030.0119
VAL 6040.0111
GLU 6050.0121
ARG 6060.0119
MET 6070.0105
GLU 6080.0093
CYS 6090.0076
ALA 6100.0098
THR 6110.0106
PRO 6120.0147
SER 6130.0165
ASP 6140.0145
LYS 6150.0100
GLN 6160.0115
GLY 6170.0112
MET 6180.0095
PRO 6190.0114
VAL 6200.0100
LEU 6210.0130
SER 6220.0172
LEU 6230.0124
ASN 6240.0173
ILE 6250.0177
THR 6260.0232
CYS 6270.0326
GLU 10.0150
ALA 20.0101
ALA 30.0068
ALA 40.0118
LYS 50.0116
MET 60.0072
GLN 70.0104
ARG 80.0118
LEU 90.0096
VAL 100.0111
LEU 110.0062
LEU 120.0051
LEU 130.0065
ALA 140.0075
ILE 150.0060
SER 160.0040
LEU 170.0056
LEU 180.0106
LEU 190.0094
TYR 200.0055
GLN 210.0109
ASP 220.0125
LEU 230.0101
PRO 240.0117
VAL 250.0095
ARG 260.0178
SER 270.0133
GLU 280.0136
PHE 290.0121
GLU 300.0093
LEU 310.0074
ASP 320.0058
ARG 330.0063
ILE 340.0058
CYS 350.0042
GLY 360.0059
TYR 370.0062
GLY 380.0065
THR 390.0071
ALA 400.0063
ARG 410.0065
CYS 420.0055
ARG 430.0101
LYS 440.0143
LYS 450.0161
CYS 460.0115
ARG 470.0125
SER 480.0136
GLN 490.0133
GLU 500.0121
TYR 510.0110
ARG 520.0082
ILE 530.0052
GLY 540.0054
ARG 550.0081
CYS 560.0072
PRO 570.0120
ASN 580.0136
THR 590.0162
TYR 600.0137
ALA 610.0084
CYS 620.0075
CYS 630.0084
LEU 640.0088
ARG 650.0104
LYS 660.0104
TRP 670.0110
ASP 680.0082
GLU 690.0067
SER 700.0071
LEU 710.0089
LEU 720.0103
ASN 730.0091
ARG 740.0078
THR 750.0094
LYS 760.0110
PRO 770.0112
GLU 780.0111
ALA 790.0138
ALA 800.0141
ALA 810.0046
LYS 820.0073
LYS 830.0048
GLU 840.0097
MET 850.0105
ASN 860.0122
LEU 870.0092
SER 880.0093
VAL 890.0074
GLY 900.0086
LEU 910.0090
GLY 920.0151
GLY 930.0231
GLY 940.0248
SER 950.0208
ASN 960.0142
LEU 970.0130
SER 980.0142
VAL 990.0136
GLY 1000.0155
LEU 1010.0134
GLY 1020.0134
GLU 1030.0132
ILE 1040.0142
GLY 1050.0143
GLY 1060.0147
GLY 1070.0080
SER 1080.0053
LYS 1090.0077
LEU 1100.0113
LEU 1110.0065
ASP 1120.0059
ILE 1130.0066
ASN 1140.0088
LEU 1150.0085
GLY 1160.0198
ARG 1170.0270
GLY 1180.0204
GLY 1190.0171
GLY 1200.0210
SER 1210.0065
MET 1220.0073
VAL 1230.0079
ASP 1240.0092
LEU 1250.0097
THR 1260.0065
PHE 1270.0075
GLY 1280.0121
GLY 1290.0146
VAL 1300.0212
GLY 1310.0757
GLY 1320.0563
GLY 1330.0317
SER 1340.0192
THR 1350.0119
PHE 1360.0227
THR 1370.0247
PHE 1380.0202
PHE 1390.0224
PRO 1400.0198
LEU 1410.0237
VAL 1420.0294
ILE 1430.0233
GLY 1440.0301
GLY 1450.0360
GLY 1460.0411
SER 1470.0306
ASP 1480.0169
ALA 1490.0165
MET 1500.0106
TYR 1510.0082
LEU 1520.0110
GLY 1530.0186
PHE 1540.0243
ALA 1550.0327
ALA 1560.0478
GLY 1570.0394
GLY 1580.0204
GLY 1590.0319
SER 1600.0497
ALA 1610.0506
GLY 1620.0471
GLY 1630.0346
GLU 1640.0231
ASN 1650.0165
HIS 1660.0133
VAL 1670.0122
ALA 1680.0119
PHE 1690.0120
GLY 1700.0126
PRO 1710.0536
GLY 1720.0572
PRO 1730.0525
GLY 1740.0238
VAL 1750.0112
ASP 1760.0188
LEU 1770.0103
THR 1780.0097
PHE 1790.0077
GLY 1800.0083
GLY 1810.0224
VAL 1820.0248
GLN 1830.0246
PHE 1840.0200
ALA 1850.0250
MET 1860.0161
VAL 1870.0151
ASN 1880.0145
ASN 1890.0146
GLY 1900.0148
PRO 1910.0273
GLY 1920.0113
PRO 1930.0195
GLY 1940.0205
GLU 1950.0077
SER 1960.0140
PHE 1970.0100
THR 1980.0023
ALA 1990.0026
GLN 2000.0078
PRO 2010.0110
ALA 2020.0027
ASP 2030.0119
MET 2040.0153
GLN 2050.0055
ALA 2060.0144
GLY 2070.0098
ILE 2080.0090
LYS 2090.0043
GLY 2100.0030
PRO 2110.0073
GLY 2120.0059
PRO 2130.0077
GLY 2140.0093
GLY 2150.0076
SER 2160.0147
ILE 2170.0062
GLN 2180.0123
VAL 2190.0071
ILE 2200.0169
ASN 2210.0428
GLY 2220.0363
SER 2230.0277
THR 2240.0193
ILE 2250.0166
GLY 2260.0116
THR 2270.0130
GLY 2280.0154
SER 2290.0156
LYS 2300.0155
LYS 2310.0125
THR 2320.0141
ILE 2330.0120
LEU 2340.0137
ILE 2350.0128
TYR 2360.0113
SER 2370.0086
ILE 2380.0124
ILE 2390.0107
GLY 2400.0158
VAL 2410.0097
LYS 2420.0095
LYS 2430.0106
GLY 2440.0109
THR 2450.0098
LEU 2460.0151
ALA 2470.0108
TRP 2480.0068
ALA 2490.0021
ARG 2500.0035
THR 2510.0180
GLY 2520.0184
PHE 2530.0131
SER 2540.0130
PRO 2550.0177
ALA 2560.0253
LYS 2570.0152
LYS 2580.0111
LEU 2590.0119
ASN 2600.0129
ALA 2610.0063
GLY 2620.0095
VAL 2630.0068
VAL 2640.0221
ARG 2650.0173
VAL 2660.0138
PHE 2670.0129
PHE 2680.0123
LEU 2690.0126
ASN 2700.0106
GLN 2710.0097
LYS 2720.0074
LYS 2730.0082
ALA 2740.0095
LYS 2750.0078
ASP 2760.0028
VAL 2770.0032
LEU 2780.0049
ARG 2790.0095
LYS 2800.0104
THR 2810.0200
SER 2820.0204
ARG 2830.0096
PRO 2840.0063
MET 2850.0121
VAL 2860.0244
ASP 2870.0192
LEU 2880.0082
THR 2890.0041
PHE 2900.0117
GLY 2910.0147
GLY 2920.0237

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elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.