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***  TLR_8_simulation  ***

<R2> analysis for 2608260327253941399

---  normal mode 9  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.1617
GLU 270.0043
PRO 280.0041
CYS 290.0038
VAL 300.0036
GLU 310.0036
VAL 320.0032
VAL 330.0033
PRO 340.0037
ASN 350.0038
ILE 360.0034
THR 370.0032
TYR 380.0034
GLN 390.0032
CYS 400.0034
MET 410.0031
GLU 420.0032
LEU 430.0036
ASN 440.0037
PHE 450.0038
TYR 460.0039
LYS 470.0039
ILE 480.0039
PRO 490.0040
ASP 500.0044
ASN 510.0045
LEU 520.0041
PRO 530.0042
PHE 540.0042
SER 550.0038
THR 560.0036
LYS 570.0032
ASN 580.0029
LEU 590.0031
ASP 600.0029
LEU 610.0031
SER 620.0028
PHE 630.0028
ASN 640.0032
PRO 650.0033
LEU 660.0034
ARG 670.0033
HIS 680.0035
LEU 690.0036
GLY 700.0039
SER 710.0041
TYR 720.0041
SER 730.0039
PHE 740.0038
PHE 750.0042
SER 760.0042
PHE 770.0039
PRO 780.0039
GLU 790.0036
LEU 800.0033
GLN 810.0029
VAL 820.0027
LEU 830.0028
ASP 840.0026
LEU 850.0027
SER 860.0024
ARG 870.0025
CYS 880.0028
GLU 890.0028
ILE 900.0029
GLN 910.0029
THR 920.0032
ILE 930.0033
GLU 940.0037
ASP 950.0039
GLY 960.0039
ALA 970.0037
TYR 980.0036
GLN 990.0039
SER 1000.0040
LEU 1010.0036
SER 1020.0036
HIS 1030.0033
LEU 1040.0030
SER 1050.0026
THR 1060.0024
LEU 1070.0025
ILE 1080.0023
LEU 1090.0024
THR 1100.0020
GLY 1110.0020
ASN 1120.0024
PRO 1130.0024
ILE 1140.0026
GLN 1150.0027
SER 1160.0031
LEU 1170.0031
ALA 1180.0035
LEU 1190.0035
GLY 1200.0037
ALA 1210.0034
PHE 1220.0032
SER 1230.0036
GLY 1240.0037
LEU 1250.0033
SER 1260.0033
SER 1270.0030
LEU 1280.0027
GLN 1290.0024
LYS 1300.0021
LEU 1310.0022
VAL 1320.0020
ALA 1330.0020
VAL 1340.0017
GLU 1350.0017
THR 1360.0020
ASN 1370.0020
LEU 1380.0021
ALA 1390.0020
SER 1400.0022
LEU 1410.0024
GLU 1420.0027
ASN 1430.0028
PHE 1440.0027
PRO 1450.0030
ILE 1460.0029
GLY 1470.0031
HIS 1480.0033
LEU 1490.0030
LYS 1500.0030
THR 1510.0028
LEU 1520.0025
LYS 1530.0021
GLU 1540.0019
LEU 1550.0019
ASN 1560.0017
VAL 1570.0017
ALA 1580.0014
HIS 1590.0013
ASN 1600.0015
LEU 1610.0016
ILE 1620.0018
GLN 1630.0017
SER 1640.0020
PHE 1650.0020
LYS 1660.0023
LEU 1670.0025
PRO 1680.0028
GLU 1690.0031
TYR 1700.0030
PHE 1710.0027
SER 1720.0030
ASN 1730.0031
LEU 1740.0027
THR 1750.0027
ASN 1760.0025
LEU 1770.0022
GLU 1780.0019
HIS 1790.0016
LEU 1800.0017
ASP 1810.0014
LEU 1820.0014
SER 1830.0011
SER 1840.0010
ASN 1850.0012
LYS 1860.0013
ILE 1870.0015
GLN 1880.0014
SER 1890.0017
ILE 1900.0020
TYR 1910.0023
CYS 1920.0026
THR 1930.0028
ASP 1940.0025
LEU 1950.0025
ARG 1960.0029
VAL 1970.0029
LEU 1980.0026
HIS 1990.0029
GLN 2000.0031
MET 2010.0029
PRO 2020.0028
LEU 2030.0027
LEU 2040.0024
ASN 2050.0020
LEU 2060.0019
SER 2070.0015
LEU 2080.0015
ASP 2090.0012
LEU 2100.0012
SER 2110.0009
LEU 2120.0008
ASN 2130.0010
PRO 2140.0010
MET 2150.0013
ASN 2160.0014
PHE 2170.0018
ILE 2180.0019
GLN 2190.0023
PRO 2200.0025
GLY 2210.0027
ALA 2220.0025
PHE 2230.0024
LYS 2240.0027
GLU 2250.0027
ILE 2260.0024
ARG 2270.0022
LEU 2280.0019
HIS 2290.0017
LYS 2300.0014
LEU 2310.0014
THR 2320.0011
LEU 2330.0011
ARG 2340.0008
ASN 2350.0007
ASN 2360.0009
PHE 2370.0010
ASP 2380.0009
SER 2390.0011
LEU 2400.0014
ASN 2410.0016
VAL 2420.0015
MET 2430.0014
LYS 2440.0018
THR 2450.0019
CYS 2460.0017
ILE 2470.0018
GLN 2480.0021
GLY 2490.0021
LEU 2500.0020
ALA 2510.0024
GLY 2520.0025
LEU 2530.0022
GLU 2540.0022
VAL 2550.0018
HIS 2560.0016
ARG 2570.0014
LEU 2580.0013
VAL 2590.0010
LEU 2600.0010
GLY 2610.0009
GLU 2620.0006
PHE 2630.0005
ARG 2640.0007
ASN 2650.0007
GLU 2660.0006
GLY 2670.0005
ASN 2680.0007
LEU 2690.0010
GLU 2700.0011
LYS 2710.0014
PHE 2720.0015
ASP 2730.0018
LYS 2740.0020
SER 2750.0020
ALA 2760.0017
LEU 2770.0018
GLU 2780.0021
GLY 2790.0021
LEU 2800.0020
CYS 2810.0023
ASN 2820.0024
LEU 2830.0022
THR 2840.0022
ILE 2850.0019
GLU 2860.0017
GLU 2870.0014
PHE 2880.0014
ARG 2890.0011
LEU 2900.0011
ALA 2910.0008
TYR 2920.0008
LEU 2930.0009
ASP 2940.0009
TYR 2950.0011
TYR 2960.0014
LEU 2970.0016
ASP 2980.0019
GLY 2990.0020
ILE 3000.0020
ILE 3010.0023
ASP 3020.0023
LEU 3030.0020
PHE 3040.0019
ASN 3050.0022
CYS 3060.0022
LEU 3070.0020
THR 3080.0022
ASN 3090.0022
VAL 3100.0019
SER 3110.0018
SER 3120.0015
PHE 3130.0015
SER 3140.0012
LEU 3150.0012
VAL 3160.0010
SER 3170.0010
VAL 3180.0012
THR 3190.0014
ILE 3200.0016
GLU 3210.0019
ARG 3220.0021
VAL 3230.0021
LYS 3240.0023
ASP 3250.0023
PHE 3260.0022
SER 3270.0025
TYR 3280.0025
ASN 3290.0025
PHE 3300.0023
GLY 3310.0022
TRP 3320.0019
GLN 3330.0018
HIS 3340.0015
LEU 3350.0015
GLU 3360.0013
LEU 3370.0014
VAL 3380.0012
ASN 3390.0011
CYS 3400.0013
LYS 3410.0015
PHE 3420.0017
GLY 3430.0019
GLN 3440.0020
PHE 3450.0020
PRO 3460.0020
THR 3470.0023
LEU 3480.0022
LYS 3490.0024
LEU 3500.0023
LYS 3510.0024
SER 3520.0022
LEU 3530.0019
LYS 3540.0018
ARG 3550.0015
LEU 3560.0015
THR 3570.0014
PHE 3580.0015
THR 3590.0013
SER 3600.0013
ASN 3610.0015
LYS 3620.0015
GLY 3630.0016
GLY 3640.0018
ASN 3650.0019
ALA 3660.0021
PHE 3670.0023
SER 3680.0025
GLU 3690.0025
VAL 3700.0024
ASP 3710.0025
LEU 3720.0023
PRO 3730.0024
SER 3740.0021
LEU 3750.0019
GLU 3760.0017
PHE 3770.0015
LEU 3780.0016
ASP 3790.0014
LEU 3800.0017
SER 3810.0015
ARG 3820.0016
ASN 3830.0017
GLY 3840.0019
LEU 3850.0020
SER 3860.0022
PHE 3870.0024
LYS 3880.0027
GLY 3890.0028
CYS 3900.0026
CYS 3910.0025
SER 3920.0026
GLN 3930.0025
SER 3940.0028
ASP 3950.0026
PHE 3960.0023
GLY 3970.0025
THR 3980.0023
ILE 3990.0023
SER 4000.0020
LEU 4010.0018
LYS 4020.0015
TYR 4030.0014
LEU 4040.0016
ASP 4050.0015
LEU 4060.0018
SER 4070.0018
PHE 4080.0018
ASN 4090.0019
GLY 4100.0021
VAL 4110.0024
ILE 4120.0025
THR 4130.0028
MET 4140.0028
SER 4150.0031
SER 4160.0029
ASN 4170.0027
PHE 4180.0025
LEU 4190.0027
GLY 4200.0025
LEU 4210.0022
GLU 4220.0021
GLN 4230.0018
LEU 4240.0017
GLU 4250.0014
HIS 4260.0013
LEU 4270.0017
ASP 4280.0016
PHE 4290.0019
GLN 4300.0018
HIS 4310.0019
SER 4320.0020
ASN 4330.0024
LEU 4340.0025
LYS 4350.0029
GLN 4360.0031
MET 4370.0030
SER 4380.0033
GLU 4390.0035
PHE 4400.0033
SER 4410.0030
VAL 4420.0028
PHE 4430.0024
LEU 4440.0026
SER 4450.0024
LEU 4460.0021
ARG 4470.0020
ASN 4480.0016
LEU 4490.0016
ILE 4500.0013
TYR 4510.0014
LEU 4520.0016
ASP 4530.0017
ILE 4540.0020
SER 4550.0020
HIS 4560.0021
THR 4570.0023
HIS 4580.0026
THR 4590.0028
ARG 4600.0032
VAL 4610.0032
ALA 4620.0036
PHE 4630.0035
ASN 4640.0034
GLY 4650.0032
ILE 4660.0029
PHE 4670.0026
ASN 4680.0027
GLY 4690.0024
LEU 4700.0021
SER 4710.0020
SER 4720.0016
LEU 4730.0016
GLU 4740.0015
VAL 4750.0015
LEU 4760.0018
LYS 4770.0018
MET 4780.0021
ALA 4790.0022
GLY 4800.0023
ASN 4810.0026
SER 4820.0031
PHE 4830.0034
GLN 4840.0038
GLU 4850.0041
ASN 4860.0038
PHE 4870.0039
LEU 4880.0035
PRO 4890.0036
ASP 4900.0034
ILE 4910.0031
PHE 4920.0028
THR 4930.0029
GLU 4940.0026
LEU 4950.0022
ARG 4960.0022
ASN 4970.0018
LEU 4980.0019
THR 4990.0018
PHE 5000.0018
LEU 5010.0021
ASP 5020.0021
LEU 5030.0025
SER 5040.0025
GLN 5050.0026
CYS 5060.0028
GLN 5070.0033
LEU 5080.0035
GLU 5090.0040
GLN 5100.0041
LEU 5110.0039
SER 5120.0040
PRO 5130.0041
THR 5140.0037
ALA 5150.0034
PHE 5160.0031
ASN 5170.0032
SER 5180.0028
LEU 5190.0025
SER 5200.0025
SER 5210.0021
LEU 5220.0022
GLN 5230.0022
VAL 5240.0022
LEU 5250.0025
ASN 5260.0025
MET 5270.0029
SER 5280.0028
HIS 5290.0029
ASN 5300.0032
ASN 5310.0037
PHE 5320.0040
PHE 5330.0045
SER 5340.0046
LEU 5350.0043
ASP 5360.0044
THR 5370.0041
PHE 5380.0042
PRO 5390.0038
TYR 5400.0035
LYS 5410.0037
CYS 5420.0033
LEU 5430.0030
ASN 5440.0029
SER 5450.0025
LEU 5460.0027
GLN 5470.0027
VAL 5480.0027
LEU 5490.0029
ASP 5500.0029
TYR 5510.0033
SER 5520.0032
LEU 5530.0033
ASN 5540.0036
HIS 5550.0041
ILE 5560.0043
MET 5570.0049
THR 5580.0051
SER 5590.0050
LYS 5600.0053
LYS 5610.0052
GLN 5620.0054
GLU 5630.0049
LEU 5640.0048
GLN 5650.0047
HIS 5660.0043
PHE 5670.0039
PRO 5680.0036
SER 5690.0036
SER 5700.0032
LEU 5710.0033
ALA 5720.0033
PHE 5730.0032
LEU 5740.0034
ASN 5750.0033
LEU 5760.0037
THR 5770.0037
GLN 5780.0037
ASN 5790.0040
ASP 5800.0045
PHE 5810.0048
ALA 5820.0054
CYS 5830.0057
THR 5840.0062
CYS 5850.0065
GLU 5860.0064
HIS 5870.0059
GLN 5880.0061
SER 5890.0058
PHE 5900.0053
LEU 5910.0054
GLN 5920.0056
TRP 5930.0052
ILE 5940.0049
LYS 5950.0052
ASP 5960.0052
GLN 5970.0047
ARG 5980.0046
GLN 5990.0043
LEU 6000.0039
LEU 6010.0039
VAL 6020.0036
GLU 6030.0038
VAL 6040.0043
GLU 6050.0044
ARG 6060.0040
MET 6070.0043
GLU 6080.0046
CYS 6090.0050
ALA 6100.0049
THR 6110.0053
PRO 6120.0058
SER 6130.0057
ASP 6140.0060
LYS 6150.0057
GLN 6160.0052
GLY 6170.0049
MET 6180.0052
PRO 6190.0050
VAL 6200.0051
LEU 6210.0052
SER 6220.0056
LEU 6230.0059
ASN 6240.0064
ILE 6250.0065
THR 6260.0070
CYS 6270.0073
GLU 10.0099
ALA 20.0097
ALA 30.0095
ALA 40.0087
LYS 50.0081
MET 60.0080
GLN 70.0076
ARG 80.0068
LEU 90.0065
VAL 100.0063
LEU 110.0057
LEU 120.0051
LEU 130.0050
ALA 140.0047
ILE 150.0041
SER 160.0037
LEU 170.0037
LEU 180.0035
LEU 190.0029
TYR 200.0028
GLN 210.0028
ASP 220.0026
LEU 230.0022
PRO 240.0021
VAL 250.0022
ARG 260.0020
SER 270.0018
GLU 280.0016
PHE 290.0016
GLU 300.0016
LEU 310.0014
ASP 320.0011
ARG 330.0011
ILE 340.0009
CYS 350.0007
GLY 360.0006
TYR 370.0009
GLY 380.0008
THR 390.0005
ALA 400.0005
ARG 410.0007
CYS 420.0008
ARG 430.0011
LYS 440.0013
LYS 450.0013
CYS 460.0012
ARG 470.0014
SER 480.0016
GLN 490.0013
GLU 500.0010
TYR 510.0010
ARG 520.0008
ILE 530.0006
GLY 540.0005
ARG 550.0005
CYS 560.0006
PRO 570.0008
ASN 580.0010
THR 590.0007
TYR 600.0008
ALA 610.0007
CYS 620.0006
CYS 630.0007
LEU 640.0006
ARG 650.0008
LYS 660.0010
TRP 670.0009
ASP 680.0010
GLU 690.0012
SER 700.0011
LEU 710.0009
LEU 720.0011
ASN 730.0012
ARG 740.0009
THR 750.0009
LYS 760.0013
PRO 770.0013
GLU 780.0010
ALA 790.0014
ALA 800.0018
ALA 810.0038
LYS 820.0033
LYS 830.0030
GLU 840.0029
MET 850.0025
ASN 860.0025
LEU 870.0018
SER 880.0019
VAL 890.0014
GLY 900.0017
LEU 910.0013
GLY 920.0018
GLY 930.0019
GLY 940.0022
SER 950.0017
ASN 960.0020
LEU 970.0017
SER 980.0021
VAL 990.0020
GLY 1000.0026
LEU 1010.0024
GLY 1020.0029
GLU 1030.0030
ILE 1040.0032
GLY 1050.0032
GLY 1060.0037
GLY 1070.0034
SER 1080.0029
LYS 1090.0026
LEU 1100.0024
LEU 1110.0019
ASP 1120.0021
ILE 1130.0017
ASN 1140.0021
LEU 1150.0017
GLY 1160.0018
ARG 1170.0023
GLY 1180.0019
GLY 1190.0023
GLY 1200.0024
SER 1210.0018
MET 1220.0021
VAL 1230.0016
ASP 1240.0019
LEU 1250.0016
THR 1260.0021
PHE 1270.0019
GLY 1280.0025
GLY 1290.0027
VAL 1300.0026
GLY 1310.0029
GLY 1320.0023
GLY 1330.0019
SER 1340.0014
THR 1350.0015
PHE 1360.0015
THR 1370.0019
PHE 1380.0022
PHE 1390.0029
PRO 1400.0034
LEU 1410.0036
VAL 1420.0043
ILE 1430.0044
GLY 1440.0051
GLY 1450.0053
GLY 1460.0051
SER 1470.0043
ASP 1480.0034
ALA 1490.0032
MET 1500.0027
TYR 1510.0026
LEU 1520.0019
GLY 1530.0020
PHE 1540.0014
ALA 1550.0015
ALA 1560.0012
GLY 1570.0013
GLY 1580.0012
GLY 1590.0015
SER 1600.0018
ALA 1610.0029
GLY 1620.0033
GLY 1630.0035
GLU 1640.0031
ASN 1650.0028
HIS 1660.0027
VAL 1670.0025
ALA 1680.0028
PHE 1690.0027
GLY 1700.0033
PRO 1710.0029
GLY 1720.0038
PRO 1730.0044
GLY 1740.0044
VAL 1750.0038
ASP 1760.0040
LEU 1770.0037
THR 1780.0039
PHE 1790.0038
GLY 1800.0044
GLY 1810.0054
VAL 1820.0054
GLN 1830.0053
PHE 1840.0052
ALA 1850.0057
MET 1860.0058
VAL 1870.0069
ASN 1880.0068
ASN 1890.0086
GLY 1900.0087
PRO 1910.0142
GLY 1920.0190
PRO 1930.0285
GLY 1940.0378
GLU 1950.0341
SER 1960.0382
PHE 1970.0378
THR 1980.0418
ALA 1990.0393
GLN 2000.0441
PRO 2010.0418
ALA 2020.0461
ASP 2030.0448
MET 2040.0406
GLN 2050.0443
ALA 2060.0449
GLY 2070.0472
ILE 2080.0416
LYS 2090.0441
GLY 2100.0432
PRO 2110.0377
GLY 2120.0441
PRO 2130.0474
GLY 2140.0401
GLY 2150.0299
SER 2160.0209
ILE 2170.0180
GLN 2180.0144
VAL 2190.0107
ILE 2200.0104
ASN 2210.0081
GLY 2220.0079
SER 2230.0091
THR 2240.0096
ILE 2250.0098
GLY 2260.0114
THR 2270.0128
GLY 2280.0128
SER 2290.0130
LYS 2300.0111
LYS 2310.0095
THR 2320.0078
ILE 2330.0062
LEU 2340.0043
ILE 2350.0030
TYR 2360.0021
SER 2370.0019
ILE 2380.0012
ILE 2390.0019
GLY 2400.0018
VAL 2410.0014
LYS 2420.0015
LYS 2430.0015
GLY 2440.0014
THR 2450.0014
LEU 2460.0010
ALA 2470.0018
TRP 2480.0024
ALA 2490.0031
ARG 2500.0037
THR 2510.0039
GLY 2520.0055
PHE 2530.0066
SER 2540.0084
PRO 2550.0094
ALA 2560.0108
LYS 2570.0125
LYS 2580.0122
LEU 2590.0121
ASN 2600.0124
ALA 2610.0104
GLY 2620.0092
VAL 2630.0075
VAL 2640.0053
ARG 2650.0049
VAL 2660.0036
PHE 2670.0037
PHE 2680.0036
LEU 2690.0040
ASN 2700.0038
GLN 2710.0025
LYS 2720.0027
LYS 2730.0035
ALA 2740.0033
LYS 2750.0028
ASP 2760.0036
VAL 2770.0049
LEU 2780.0044
ARG 2790.0038
LYS 2800.0048
THR 2810.0079
SER 2820.0151
ARG 2830.0228
PRO 2840.0318
MET 2850.0410
VAL 2860.0567
ASP 2870.0790
LEU 2880.0842
THR 2890.1091
PHE 2900.1253
GLY 2910.1527
GLY 2920.1617

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.