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***  TLR_8_simulation  ***

<R2> analysis for 2608260327253941399

---  normal mode 90  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0717
GLU 270.0097
PRO 280.0075
CYS 290.0048
VAL 300.0058
GLU 310.0072
VAL 320.0067
VAL 330.0059
PRO 340.0073
ASN 350.0060
ILE 360.0018
THR 370.0014
TYR 380.0016
GLN 390.0013
CYS 400.0029
MET 410.0032
GLU 420.0040
LEU 430.0037
ASN 440.0050
PHE 450.0061
TYR 460.0079
LYS 470.0100
ILE 480.0090
PRO 490.0077
ASP 500.0105
ASN 510.0101
LEU 520.0079
PRO 530.0076
PHE 540.0086
SER 550.0058
THR 560.0043
LYS 570.0045
ASN 580.0043
LEU 590.0045
ASP 600.0044
LEU 610.0052
SER 620.0056
PHE 630.0059
ASN 640.0060
PRO 650.0071
LEU 660.0076
ARG 670.0068
HIS 680.0067
LEU 690.0069
GLY 700.0068
SER 710.0068
TYR 720.0087
SER 730.0076
PHE 740.0075
PHE 750.0084
SER 760.0078
PHE 770.0079
PRO 780.0090
GLU 790.0073
LEU 800.0070
GLN 810.0072
VAL 820.0063
LEU 830.0061
ASP 840.0058
LEU 850.0058
SER 860.0056
ARG 870.0058
CYS 880.0058
GLU 890.0058
ILE 900.0057
GLN 910.0057
THR 920.0053
ILE 930.0056
GLU 940.0055
ASP 950.0056
GLY 960.0060
ALA 970.0065
TYR 980.0068
GLN 990.0074
SER 1000.0074
LEU 1010.0072
SER 1020.0078
HIS 1030.0077
LEU 1040.0069
SER 1050.0071
THR 1060.0063
LEU 1070.0050
ILE 1080.0048
LEU 1090.0041
THR 1100.0041
GLY 1110.0036
ASN 1120.0042
PRO 1130.0038
ILE 1140.0037
GLN 1150.0033
SER 1160.0033
LEU 1170.0028
ALA 1180.0025
LEU 1190.0028
GLY 1200.0034
ALA 1210.0037
PHE 1220.0044
SER 1230.0050
GLY 1240.0054
LEU 1250.0052
SER 1260.0059
SER 1270.0068
LEU 1280.0054
GLN 1290.0058
LYS 1300.0051
LEU 1310.0036
VAL 1320.0027
ALA 1330.0020
VAL 1340.0025
GLU 1350.0022
THR 1360.0013
ASN 1370.0021
LEU 1380.0024
ALA 1390.0039
SER 1400.0047
LEU 1410.0047
GLU 1420.0047
ASN 1430.0039
PHE 1440.0020
PRO 1450.0027
ILE 1460.0017
GLY 1470.0033
HIS 1480.0034
LEU 1490.0026
LYS 1500.0026
THR 1510.0036
LEU 1520.0026
LYS 1530.0036
GLU 1540.0033
LEU 1550.0022
ASN 1560.0028
VAL 1570.0023
ALA 1580.0029
HIS 1590.0032
ASN 1600.0033
LEU 1610.0040
ILE 1620.0056
GLN 1630.0062
SER 1640.0071
PHE 1650.0072
LYS 1660.0081
LEU 1670.0067
PRO 1680.0070
GLU 1690.0074
TYR 1700.0064
PHE 1710.0055
SER 1720.0056
ASN 1730.0049
LEU 1740.0025
THR 1750.0020
ASN 1760.0012
LEU 1770.0009
GLU 1780.0020
HIS 1790.0020
LEU 1800.0020
ASP 1810.0026
LEU 1820.0031
SER 1830.0035
SER 1840.0041
ASN 1850.0046
LYS 1860.0057
ILE 1870.0075
GLN 1880.0081
SER 1890.0093
ILE 1900.0099
TYR 1910.0114
CYS 1920.0104
THR 1930.0106
ASP 1940.0102
LEU 1950.0093
ARG 1960.0094
VAL 1970.0083
LEU 1980.0072
HIS 1990.0077
GLN 2000.0074
MET 2010.0062
PRO 2020.0044
LEU 2030.0033
LEU 2040.0024
ASN 2050.0017
LEU 2060.0018
SER 2070.0011
LEU 2080.0016
ASP 2090.0023
LEU 2100.0034
SER 2110.0037
LEU 2120.0052
ASN 2130.0064
PRO 2140.0069
MET 2150.0077
ASN 2160.0086
PHE 2170.0107
ILE 2180.0107
GLN 2190.0112
PRO 2200.0113
GLY 2210.0114
ALA 2220.0108
PHE 2230.0092
LYS 2240.0094
GLU 2250.0082
ILE 2260.0076
ARG 2270.0039
LEU 2280.0026
HIS 2290.0017
LYS 2300.0017
LEU 2310.0020
THR 2320.0031
LEU 2330.0043
ARG 2340.0044
ASN 2350.0059
ASN 2360.0071
PHE 2370.0098
ASP 2380.0102
SER 2390.0100
LEU 2400.0097
ASN 2410.0105
VAL 2420.0108
MET 2430.0100
LYS 2440.0103
THR 2450.0111
CYS 2460.0106
ILE 2470.0096
GLN 2480.0107
GLY 2490.0109
LEU 2500.0095
ALA 2510.0097
GLY 2520.0086
LEU 2530.0064
GLU 2540.0043
VAL 2550.0027
HIS 2560.0021
ARG 2570.0025
LEU 2580.0017
VAL 2590.0026
LEU 2600.0030
GLY 2610.0036
GLU 2620.0054
PHE 2630.0065
ARG 2640.0085
ASN 2650.0088
GLU 2660.0078
GLY 2670.0094
ASN 2680.0082
LEU 2690.0081
GLU 2700.0080
LYS 2710.0076
PHE 2720.0068
ASP 2730.0072
LYS 2740.0075
SER 2750.0090
ALA 2760.0080
LEU 2770.0061
GLU 2780.0081
GLY 2790.0086
LEU 2800.0061
CYS 2810.0071
ASN 2820.0086
LEU 2830.0060
THR 2840.0035
ILE 2850.0018
GLU 2860.0031
GLU 2870.0037
PHE 2880.0025
ARG 2890.0028
LEU 2900.0021
ALA 2910.0035
TYR 2920.0049
LEU 2930.0045
ASP 2940.0054
TYR 2950.0047
TYR 2960.0037
LEU 2970.0019
ASP 2980.0027
GLY 2990.0029
ILE 3000.0021
ILE 3010.0032
ASP 3020.0046
LEU 3030.0031
PHE 3040.0023
ASN 3050.0034
CYS 3060.0030
LEU 3070.0023
THR 3080.0023
ASN 3090.0036
VAL 3100.0040
SER 3110.0051
SER 3120.0051
PHE 3130.0046
SER 3140.0050
LEU 3150.0046
VAL 3160.0051
SER 3170.0057
VAL 3180.0046
THR 3190.0042
ILE 3200.0039
GLU 3210.0041
ARG 3220.0045
VAL 3230.0055
LYS 3240.0062
ASP 3250.0048
PHE 3260.0062
SER 3270.0052
TYR 3280.0045
ASN 3290.0050
PHE 3300.0050
GLY 3310.0058
TRP 3320.0062
GLN 3330.0066
HIS 3340.0066
LEU 3350.0064
GLU 3360.0065
LEU 3370.0078
VAL 3380.0081
ASN 3390.0083
CYS 3400.0081
LYS 3410.0083
PHE 3420.0086
GLY 3430.0082
GLN 3440.0088
PHE 3450.0093
PRO 3460.0097
THR 3470.0086
LEU 3480.0085
LYS 3490.0084
LEU 3500.0085
LYS 3510.0086
SER 3520.0086
LEU 3530.0080
LYS 3540.0071
ARG 3550.0069
LEU 3560.0073
THR 3570.0076
PHE 3580.0083
THR 3590.0083
SER 3600.0091
ASN 3610.0097
LYS 3620.0093
GLY 3630.0097
GLY 3640.0099
ASN 3650.0092
ALA 3660.0091
PHE 3670.0093
SER 3680.0105
GLU 3690.0100
VAL 3700.0100
ASP 3710.0100
LEU 3720.0095
PRO 3730.0095
SER 3740.0089
LEU 3750.0081
GLU 3760.0073
PHE 3770.0054
LEU 3780.0058
ASP 3790.0061
LEU 3800.0064
SER 3810.0061
ARG 3820.0073
ASN 3830.0081
GLY 3840.0064
LEU 3850.0068
SER 3860.0066
PHE 3870.0063
LYS 3880.0093
GLY 3890.0104
CYS 3900.0074
CYS 3910.0072
SER 3920.0091
GLN 3930.0096
SER 3940.0126
ASP 3950.0103
PHE 3960.0096
GLY 3970.0107
THR 3980.0091
ILE 3990.0086
SER 4000.0068
LEU 4010.0053
LYS 4020.0018
TYR 4030.0018
LEU 4040.0019
ASP 4050.0026
LEU 4060.0022
SER 4070.0029
PHE 4080.0042
ASN 4090.0029
GLY 4100.0022
VAL 4110.0036
ILE 4120.0041
THR 4130.0075
MET 4140.0089
SER 4150.0116
SER 4160.0112
ASN 4170.0113
PHE 4180.0088
LEU 4190.0112
GLY 4200.0096
LEU 4210.0063
GLU 4220.0085
GLN 4230.0051
LEU 4240.0045
GLU 4250.0053
HIS 4260.0050
LEU 4270.0039
ASP 4280.0041
PHE 4290.0040
GLN 4300.0059
HIS 4310.0054
SER 4320.0032
ASN 4330.0042
LEU 4340.0056
LYS 4350.0080
GLN 4360.0106
MET 4370.0091
SER 4380.0116
GLU 4390.0120
PHE 4400.0123
SER 4410.0115
VAL 4420.0105
PHE 4430.0101
LEU 4440.0120
SER 4450.0107
LEU 4460.0094
ARG 4470.0116
ASN 4480.0098
LEU 4490.0094
ILE 4500.0101
TYR 4510.0095
LEU 4520.0088
ASP 4530.0086
ILE 4540.0086
SER 4550.0093
HIS 4560.0089
THR 4570.0089
HIS 4580.0089
THR 4590.0087
ARG 4600.0087
VAL 4610.0086
ALA 4620.0082
PHE 4630.0092
ASN 4640.0102
GLY 4650.0110
ILE 4660.0104
PHE 4670.0111
ASN 4680.0118
GLY 4690.0113
LEU 4700.0110
SER 4710.0120
SER 4720.0117
LEU 4730.0111
GLU 4740.0111
VAL 4750.0106
LEU 4760.0103
LYS 4770.0093
MET 4780.0091
ALA 4790.0090
GLY 4800.0089
ASN 4810.0090
SER 4820.0084
PHE 4830.0082
GLN 4840.0094
GLU 4850.0100
ASN 4860.0087
PHE 4870.0074
LEU 4880.0065
PRO 4890.0069
ASP 4900.0068
ILE 4910.0087
PHE 4920.0076
THR 4930.0072
GLU 4940.0084
LEU 4950.0088
ARG 4960.0086
ASN 4970.0091
LEU 4980.0084
THR 4990.0087
PHE 5000.0083
LEU 5010.0072
ASP 5020.0063
LEU 5030.0060
SER 5040.0059
GLN 5050.0066
CYS 5060.0070
GLN 5070.0069
LEU 5080.0058
GLU 5090.0067
GLN 5100.0069
LEU 5110.0060
SER 5120.0060
PRO 5130.0059
THR 5140.0051
ALA 5150.0039
PHE 5160.0029
ASN 5170.0026
SER 5180.0028
LEU 5190.0041
SER 5200.0047
SER 5210.0069
LEU 5220.0045
GLN 5230.0062
VAL 5240.0050
LEU 5250.0026
ASN 5260.0026
MET 5270.0021
SER 5280.0022
HIS 5290.0034
ASN 5300.0040
ASN 5310.0051
PHE 5320.0037
PHE 5330.0046
SER 5340.0057
LEU 5350.0057
ASP 5360.0069
THR 5370.0059
PHE 5380.0069
PRO 5390.0049
TYR 5400.0047
LYS 5410.0071
CYS 5420.0053
LEU 5430.0050
ASN 5440.0071
SER 5450.0072
LEU 5460.0061
GLN 5470.0065
VAL 5480.0048
LEU 5490.0034
ASP 5500.0027
TYR 5510.0031
SER 5520.0036
LEU 5530.0029
ASN 5540.0039
HIS 5550.0043
ILE 5560.0053
MET 5570.0052
THR 5580.0062
SER 5590.0073
LYS 5600.0073
LYS 5610.0085
GLN 5620.0084
GLU 5630.0086
LEU 5640.0077
GLN 5650.0098
HIS 5660.0096
PHE 5670.0073
PRO 5680.0076
SER 5690.0095
SER 5700.0089
LEU 5710.0074
ALA 5720.0039
PHE 5730.0044
LEU 5740.0045
ASN 5750.0053
LEU 5760.0055
THR 5770.0069
GLN 5780.0060
ASN 5790.0064
ASP 5800.0065
PHE 5810.0076
ALA 5820.0088
CYS 5830.0081
THR 5840.0090
CYS 5850.0112
GLU 5860.0114
HIS 5870.0070
GLN 5880.0084
SER 5890.0084
PHE 5900.0073
LEU 5910.0084
GLN 5920.0077
TRP 5930.0074
ILE 5940.0091
LYS 5950.0108
ASP 5960.0102
GLN 5970.0070
ARG 5980.0072
GLN 5990.0078
LEU 6000.0075
LEU 6010.0071
VAL 6020.0086
GLU 6030.0097
VAL 6040.0092
GLU 6050.0104
ARG 6060.0105
MET 6070.0097
GLU 6080.0101
CYS 6090.0093
ALA 6100.0114
THR 6110.0118
PRO 6120.0131
SER 6130.0152
ASP 6140.0126
LYS 6150.0110
GLN 6160.0138
GLY 6170.0136
MET 6180.0121
PRO 6190.0123
VAL 6200.0104
LEU 6210.0115
SER 6220.0164
LEU 6230.0118
ASN 6240.0145
ILE 6250.0148
THR 6260.0187
CYS 6270.0243
GLU 10.0138
ALA 20.0091
ALA 30.0051
ALA 40.0103
LYS 50.0095
MET 60.0057
GLN 70.0093
ARG 80.0108
LEU 90.0087
VAL 100.0108
LEU 110.0054
LEU 120.0056
LEU 130.0061
ALA 140.0063
ILE 150.0054
SER 160.0033
LEU 170.0068
LEU 180.0129
LEU 190.0109
TYR 200.0053
GLN 210.0130
ASP 220.0151
LEU 230.0112
PRO 240.0130
VAL 250.0101
ARG 260.0238
SER 270.0163
GLU 280.0197
PHE 290.0168
GLU 300.0096
LEU 310.0077
ASP 320.0068
ARG 330.0053
ILE 340.0046
CYS 350.0050
GLY 360.0054
TYR 370.0050
GLY 380.0045
THR 390.0057
ALA 400.0053
ARG 410.0054
CYS 420.0058
ARG 430.0110
LYS 440.0155
LYS 450.0174
CYS 460.0103
ARG 470.0116
SER 480.0122
GLN 490.0115
GLU 500.0099
TYR 510.0098
ARG 520.0085
ILE 530.0047
GLY 540.0071
ARG 550.0098
CYS 560.0092
PRO 570.0130
ASN 580.0135
THR 590.0176
TYR 600.0148
ALA 610.0086
CYS 620.0065
CYS 630.0075
LEU 640.0070
ARG 650.0090
LYS 660.0070
TRP 670.0069
ASP 680.0049
GLU 690.0036
SER 700.0036
LEU 710.0038
LEU 720.0043
ASN 730.0042
ARG 740.0044
THR 750.0052
LYS 760.0094
PRO 770.0129
GLU 780.0125
ALA 790.0173
ALA 800.0198
ALA 810.0173
LYS 820.0158
LYS 830.0113
GLU 840.0113
MET 850.0106
ASN 860.0072
LEU 870.0056
SER 880.0062
VAL 890.0050
GLY 900.0064
LEU 910.0081
GLY 920.0149
GLY 930.0194
GLY 940.0238
SER 950.0165
ASN 960.0088
LEU 970.0070
SER 980.0080
VAL 990.0066
GLY 1000.0077
LEU 1010.0107
GLY 1020.0163
GLU 1030.0192
ILE 1040.0255
GLY 1050.0293
GLY 1060.0211
GLY 1070.0153
SER 1080.0114
LYS 1090.0066
LEU 1100.0060
LEU 1110.0088
ASP 1120.0092
ILE 1130.0097
ASN 1140.0102
LEU 1150.0109
GLY 1160.0155
ARG 1170.0193
GLY 1180.0139
GLY 1190.0253
GLY 1200.0316
SER 1210.0117
MET 1220.0088
VAL 1230.0071
ASP 1240.0045
LEU 1250.0029
THR 1260.0050
PHE 1270.0114
GLY 1280.0196
GLY 1290.0226
VAL 1300.0290
GLY 1310.0717
GLY 1320.0491
GLY 1330.0207
SER 1340.0194
THR 1350.0212
PHE 1360.0263
THR 1370.0295
PHE 1380.0218
PHE 1390.0252
PRO 1400.0196
LEU 1410.0229
VAL 1420.0262
ILE 1430.0160
GLY 1440.0204
GLY 1450.0250
GLY 1460.0271
SER 1470.0193
ASP 1480.0100
ALA 1490.0075
MET 1500.0049
TYR 1510.0107
LEU 1520.0146
GLY 1530.0268
PHE 1540.0315
ALA 1550.0432
ALA 1560.0624
GLY 1570.0561
GLY 1580.0376
GLY 1590.0377
SER 1600.0454
ALA 1610.0521
GLY 1620.0492
GLY 1630.0390
GLU 1640.0248
ASN 1650.0138
HIS 1660.0065
VAL 1670.0059
ALA 1680.0058
PHE 1690.0066
GLY 1700.0074
PRO 1710.0461
GLY 1720.0524
PRO 1730.0511
GLY 1740.0248
VAL 1750.0064
ASP 1760.0133
LEU 1770.0062
THR 1780.0062
PHE 1790.0102
GLY 1800.0111
GLY 1810.0247
VAL 1820.0301
GLN 1830.0272
PHE 1840.0256
ALA 1850.0282
MET 1860.0107
VAL 1870.0114
ASN 1880.0107
ASN 1890.0108
GLY 1900.0105
PRO 1910.0153
GLY 1920.0131
PRO 1930.0181
GLY 1940.0161
GLU 1950.0135
SER 1960.0168
PHE 1970.0142
THR 1980.0025
ALA 1990.0038
GLN 2000.0139
PRO 2010.0153
ALA 2020.0082
ASP 2030.0166
MET 2040.0155
GLN 2050.0047
ALA 2060.0147
GLY 2070.0054
ILE 2080.0079
LYS 2090.0123
GLY 2100.0249
PRO 2110.0132
GLY 2120.0083
PRO 2130.0208
GLY 2140.0232
GLY 2150.0222
SER 2160.0209
ILE 2170.0124
GLN 2180.0198
VAL 2190.0171
ILE 2200.0272
ASN 2210.0619
GLY 2220.0524
SER 2230.0360
THR 2240.0349
ILE 2250.0268
GLY 2260.0224
THR 2270.0239
GLY 2280.0226
SER 2290.0231
LYS 2300.0209
LYS 2310.0181
THR 2320.0096
ILE 2330.0060
LEU 2340.0121
ILE 2350.0165
TYR 2360.0259
SER 2370.0263
ILE 2380.0219
ILE 2390.0168
GLY 2400.0160
VAL 2410.0080
LYS 2420.0083
LYS 2430.0095
GLY 2440.0116
THR 2450.0102
LEU 2460.0117
ALA 2470.0104
TRP 2480.0103
ALA 2490.0097
ARG 2500.0100
THR 2510.0170
GLY 2520.0104
PHE 2530.0103
SER 2540.0070
PRO 2550.0041
ALA 2560.0367
LYS 2570.0316
LYS 2580.0219
LEU 2590.0147
ASN 2600.0306
ALA 2610.0388
GLY 2620.0265
VAL 2630.0255
VAL 2640.0258
ARG 2650.0115
VAL 2660.0033
PHE 2670.0039
PHE 2680.0118
LEU 2690.0121
ASN 2700.0180
GLN 2710.0104
LYS 2720.0075
LYS 2730.0102
ALA 2740.0084
LYS 2750.0048
ASP 2760.0074
VAL 2770.0082
LEU 2780.0121
ARG 2790.0135
LYS 2800.0119
THR 2810.0157
SER 2820.0177
ARG 2830.0084
PRO 2840.0073
MET 2850.0060
VAL 2860.0170
ASP 2870.0110
LEU 2880.0084
THR 2890.0065
PHE 2900.0108
GLY 2910.0138
GLY 2920.0182

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elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.