CNRS Nantes University US2B US2B
home |  start a new run |  job status |  references&downloads |  examples |  help  

Should you encounter any unexpected behaviour,
please let us know.
elNémo has been relocated.
**Some cleaning from time to time**
Sorry for the inconvenience.


***  TLR_8_simulation  ***

<R2> analysis for 2608260327253941399

---  normal mode 94  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0768
GLU 270.0109
PRO 280.0097
CYS 290.0053
VAL 300.0067
GLU 310.0091
VAL 320.0109
VAL 330.0120
PRO 340.0111
ASN 350.0066
ILE 360.0070
THR 370.0061
TYR 380.0025
GLN 390.0019
CYS 400.0033
MET 410.0047
GLU 420.0066
LEU 430.0067
ASN 440.0087
PHE 450.0085
TYR 460.0104
LYS 470.0111
ILE 480.0088
PRO 490.0065
ASP 500.0079
ASN 510.0071
LEU 520.0043
PRO 530.0023
PHE 540.0031
SER 550.0028
THR 560.0030
LYS 570.0060
ASN 580.0060
LEU 590.0051
ASP 600.0053
LEU 610.0064
SER 620.0074
PHE 630.0083
ASN 640.0083
PRO 650.0097
LEU 660.0094
ARG 670.0086
HIS 680.0072
LEU 690.0065
GLY 700.0056
SER 710.0052
TYR 720.0070
SER 730.0068
PHE 740.0067
PHE 750.0068
SER 760.0066
PHE 770.0063
PRO 780.0074
GLU 790.0068
LEU 800.0067
GLN 810.0073
VAL 820.0062
LEU 830.0062
ASP 840.0062
LEU 850.0067
SER 860.0070
ARG 870.0078
CYS 880.0076
GLU 890.0073
ILE 900.0070
GLN 910.0065
THR 920.0047
ILE 930.0046
GLU 940.0039
ASP 950.0035
GLY 960.0039
ALA 970.0057
TYR 980.0058
GLN 990.0062
SER 1000.0066
LEU 1010.0063
SER 1020.0064
HIS 1030.0066
LEU 1040.0055
SER 1050.0049
THR 1060.0041
LEU 1070.0039
ILE 1080.0044
LEU 1090.0043
THR 1100.0050
GLY 1110.0052
ASN 1120.0055
PRO 1130.0045
ILE 1140.0041
GLN 1150.0031
SER 1160.0029
LEU 1170.0019
ALA 1180.0023
LEU 1190.0023
GLY 1200.0017
ALA 1210.0019
PHE 1220.0022
SER 1230.0027
GLY 1240.0032
LEU 1250.0030
SER 1260.0032
SER 1270.0026
LEU 1280.0020
GLN 1290.0027
LYS 1300.0026
LEU 1310.0018
VAL 1320.0027
ALA 1330.0028
VAL 1340.0032
GLU 1350.0034
THR 1360.0031
ASN 1370.0044
LEU 1380.0040
ALA 1390.0040
SER 1400.0046
LEU 1410.0052
GLU 1420.0064
ASN 1430.0055
PHE 1440.0043
PRO 1450.0045
ILE 1460.0045
GLY 1470.0056
HIS 1480.0051
LEU 1490.0040
LYS 1500.0053
THR 1510.0047
LEU 1520.0043
LYS 1530.0043
GLU 1540.0037
LEU 1550.0033
ASN 1560.0027
VAL 1570.0033
ALA 1580.0027
HIS 1590.0028
ASN 1600.0033
LEU 1610.0035
ILE 1620.0038
GLN 1630.0030
SER 1640.0028
PHE 1650.0034
LYS 1660.0050
LEU 1670.0072
PRO 1680.0082
GLU 1690.0099
TYR 1700.0100
PHE 1710.0093
SER 1720.0107
ASN 1730.0098
LEU 1740.0085
THR 1750.0095
ASN 1760.0085
LEU 1770.0061
GLU 1780.0058
HIS 1790.0049
LEU 1800.0038
ASP 1810.0029
LEU 1820.0021
SER 1830.0012
SER 1840.0014
ASN 1850.0021
LYS 1860.0027
ILE 1870.0008
GLN 1880.0026
SER 1890.0022
ILE 1900.0024
TYR 1910.0025
CYS 1920.0043
THR 1930.0045
ASP 1940.0048
LEU 1950.0072
ARG 1960.0084
VAL 1970.0092
LEU 1980.0095
HIS 1990.0097
GLN 2000.0113
MET 2010.0122
PRO 2020.0105
LEU 2030.0114
LEU 2040.0095
ASN 2050.0090
LEU 2060.0066
SER 2070.0053
LEU 2080.0038
ASP 2090.0028
LEU 2100.0015
SER 2110.0015
LEU 2120.0011
ASN 2130.0012
PRO 2140.0029
MET 2150.0032
ASN 2160.0048
PHE 2170.0048
ILE 2180.0051
GLN 2190.0057
PRO 2200.0085
GLY 2210.0090
ALA 2220.0071
PHE 2230.0088
LYS 2240.0110
GLU 2250.0126
ILE 2260.0112
ARG 2270.0086
LEU 2280.0076
HIS 2290.0081
LYS 2300.0064
LEU 2310.0050
THR 2320.0047
LEU 2330.0039
ARG 2340.0032
ASN 2350.0028
ASN 2360.0029
PHE 2370.0043
ASP 2380.0045
SER 2390.0056
LEU 2400.0065
ASN 2410.0070
VAL 2420.0060
MET 2430.0060
LYS 2440.0075
THR 2450.0074
CYS 2460.0065
ILE 2470.0075
GLN 2480.0086
GLY 2490.0074
LEU 2500.0082
ALA 2510.0099
GLY 2520.0103
LEU 2530.0090
GLU 2540.0094
VAL 2550.0081
HIS 2560.0085
ARG 2570.0073
LEU 2580.0063
VAL 2590.0053
LEU 2600.0044
GLY 2610.0036
GLU 2620.0037
PHE 2630.0031
ARG 2640.0037
ASN 2650.0031
GLU 2660.0037
GLY 2670.0036
ASN 2680.0040
LEU 2690.0047
GLU 2700.0048
LYS 2710.0053
PHE 2720.0044
ASP 2730.0044
LYS 2740.0049
SER 2750.0061
ALA 2760.0061
LEU 2770.0059
GLU 2780.0073
GLY 2790.0072
LEU 2800.0075
CYS 2810.0091
ASN 2820.0088
LEU 2830.0084
THR 2840.0089
ILE 2850.0079
GLU 2860.0085
GLU 2870.0062
PHE 2880.0056
ARG 2890.0052
LEU 2900.0048
ALA 2910.0052
TYR 2920.0043
LEU 2930.0043
ASP 2940.0044
TYR 2950.0044
TYR 2960.0044
LEU 2970.0045
ASP 2980.0037
GLY 2990.0036
ILE 3000.0039
ILE 3010.0033
ASP 3020.0039
LEU 3030.0039
PHE 3040.0045
ASN 3050.0047
CYS 3060.0053
LEU 3070.0050
THR 3080.0049
ASN 3090.0057
VAL 3100.0059
SER 3110.0064
SER 3120.0048
PHE 3130.0047
SER 3140.0050
LEU 3150.0052
VAL 3160.0058
SER 3170.0058
VAL 3180.0054
THR 3190.0050
ILE 3200.0048
GLU 3210.0045
ARG 3220.0047
VAL 3230.0046
LYS 3240.0041
ASP 3250.0042
PHE 3260.0042
SER 3270.0029
TYR 3280.0033
ASN 3290.0033
PHE 3300.0041
GLY 3310.0043
TRP 3320.0048
GLN 3330.0042
HIS 3340.0041
LEU 3350.0043
GLU 3360.0046
LEU 3370.0047
VAL 3380.0055
ASN 3390.0063
CYS 3400.0060
LYS 3410.0060
PHE 3420.0055
GLY 3430.0052
GLN 3440.0051
PHE 3450.0053
PRO 3460.0050
THR 3470.0041
LEU 3480.0038
LYS 3490.0033
LEU 3500.0037
LYS 3510.0034
SER 3520.0042
LEU 3530.0036
LYS 3540.0030
ARG 3550.0027
LEU 3560.0028
THR 3570.0040
PHE 3580.0043
THR 3590.0049
SER 3600.0057
ASN 3610.0058
LYS 3620.0068
GLY 3630.0058
GLY 3640.0055
ASN 3650.0066
ALA 3660.0068
PHE 3670.0048
SER 3680.0043
GLU 3690.0032
VAL 3700.0032
ASP 3710.0025
LEU 3720.0019
PRO 3730.0021
SER 3740.0034
LEU 3750.0022
GLU 3760.0029
PHE 3770.0022
LEU 3780.0020
ASP 3790.0027
LEU 3800.0031
SER 3810.0037
ARG 3820.0049
ASN 3830.0050
GLY 3840.0049
LEU 3850.0052
SER 3860.0053
PHE 3870.0035
LYS 3880.0036
GLY 3890.0026
CYS 3900.0016
CYS 3910.0011
SER 3920.0015
GLN 3930.0012
SER 3940.0012
ASP 3950.0015
PHE 3960.0014
GLY 3970.0009
THR 3980.0019
ILE 3990.0034
SER 4000.0038
LEU 4010.0025
LYS 4020.0028
TYR 4030.0021
LEU 4040.0015
ASP 4050.0018
LEU 4060.0023
SER 4070.0032
PHE 4080.0033
ASN 4090.0035
GLY 4100.0035
VAL 4110.0033
ILE 4120.0022
THR 4130.0023
MET 4140.0017
SER 4150.0023
SER 4160.0018
ASN 4170.0024
PHE 4180.0022
LEU 4190.0025
GLY 4200.0024
LEU 4210.0023
GLU 4220.0034
GLN 4230.0033
LEU 4240.0025
GLU 4250.0026
HIS 4260.0018
LEU 4270.0010
ASP 4280.0012
PHE 4290.0010
GLN 4300.0013
HIS 4310.0014
SER 4320.0018
ASN 4330.0015
LEU 4340.0012
LYS 4350.0015
GLN 4360.0017
MET 4370.0015
SER 4380.0016
GLU 4390.0018
PHE 4400.0020
SER 4410.0020
VAL 4420.0021
PHE 4430.0022
LEU 4440.0025
SER 4450.0025
LEU 4460.0024
ARG 4470.0025
ASN 4480.0024
LEU 4490.0022
ILE 4500.0020
TYR 4510.0019
LEU 4520.0018
ASP 4530.0020
ILE 4540.0019
SER 4550.0022
HIS 4560.0022
THR 4570.0026
HIS 4580.0029
THR 4590.0024
ARG 4600.0027
VAL 4610.0023
ALA 4620.0030
PHE 4630.0024
ASN 4640.0024
GLY 4650.0018
ILE 4660.0018
PHE 4670.0020
ASN 4680.0017
GLY 4690.0014
LEU 4700.0015
SER 4710.0010
SER 4720.0010
LEU 4730.0014
GLU 4740.0016
VAL 4750.0021
LEU 4760.0022
LYS 4770.0025
MET 4780.0028
ALA 4790.0033
GLY 4800.0039
ASN 4810.0037
SER 4820.0052
PHE 4830.0049
GLN 4840.0058
GLU 4850.0070
ASN 4860.0064
PHE 4870.0058
LEU 4880.0044
PRO 4890.0046
ASP 4900.0038
ILE 4910.0031
PHE 4920.0019
THR 4930.0024
GLU 4940.0017
LEU 4950.0006
ARG 4960.0016
ASN 4970.0017
LEU 4980.0012
THR 4990.0024
PHE 5000.0024
LEU 5010.0018
ASP 5020.0028
LEU 5030.0031
SER 5040.0039
GLN 5050.0048
CYS 5060.0046
GLN 5070.0060
LEU 5080.0048
GLU 5090.0054
GLN 5100.0051
LEU 5110.0040
SER 5120.0052
PRO 5130.0050
THR 5140.0049
ALA 5150.0036
PHE 5160.0026
ASN 5170.0042
SER 5180.0040
LEU 5190.0028
SER 5200.0043
SER 5210.0042
LEU 5220.0030
GLN 5230.0040
VAL 5240.0033
LEU 5250.0018
ASN 5260.0026
MET 5270.0023
SER 5280.0034
HIS 5290.0043
ASN 5300.0040
ASN 5310.0044
PHE 5320.0019
PHE 5330.0017
SER 5340.0010
LEU 5350.0009
ASP 5360.0012
THR 5370.0019
PHE 5380.0033
PRO 5390.0030
TYR 5400.0026
LYS 5410.0040
CYS 5420.0052
LEU 5430.0042
ASN 5440.0058
SER 5450.0054
LEU 5460.0041
GLN 5470.0047
VAL 5480.0039
LEU 5490.0025
ASP 5500.0026
TYR 5510.0019
SER 5520.0025
LEU 5530.0028
ASN 5540.0023
HIS 5550.0020
ILE 5560.0013
MET 5570.0011
THR 5580.0011
SER 5590.0013
LYS 5600.0016
LYS 5610.0020
GLN 5620.0023
GLU 5630.0021
LEU 5640.0013
GLN 5650.0017
HIS 5660.0026
PHE 5670.0031
PRO 5680.0042
SER 5690.0054
SER 5700.0052
LEU 5710.0041
ALA 5720.0033
PHE 5730.0029
LEU 5740.0021
ASN 5750.0022
LEU 5760.0017
THR 5770.0012
GLN 5780.0013
ASN 5790.0015
ASP 5800.0019
PHE 5810.0023
ALA 5820.0053
CYS 5830.0027
THR 5840.0044
CYS 5850.0059
GLU 5860.0083
HIS 5870.0049
GLN 5880.0048
SER 5890.0056
PHE 5900.0036
LEU 5910.0024
GLN 5920.0040
TRP 5930.0036
ILE 5940.0019
LYS 5950.0035
ASP 5960.0043
GLN 5970.0026
ARG 5980.0021
GLN 5990.0020
LEU 6000.0014
LEU 6010.0011
VAL 6020.0016
GLU 6030.0011
VAL 6040.0013
GLU 6050.0018
ARG 6060.0011
MET 6070.0020
GLU 6080.0037
CYS 6090.0043
ALA 6100.0066
THR 6110.0078
PRO 6120.0098
SER 6130.0131
ASP 6140.0120
LYS 6150.0084
GLN 6160.0099
GLY 6170.0087
MET 6180.0067
PRO 6190.0051
VAL 6200.0021
LEU 6210.0037
SER 6220.0062
LEU 6230.0032
ASN 6240.0039
ILE 6250.0054
THR 6260.0073
CYS 6270.0090
GLU 10.0123
ALA 20.0074
ALA 30.0063
ALA 40.0107
LYS 50.0077
MET 60.0062
GLN 70.0089
ARG 80.0096
LEU 90.0079
VAL 100.0100
LEU 110.0044
LEU 120.0058
LEU 130.0061
ALA 140.0055
ILE 150.0052
SER 160.0025
LEU 170.0076
LEU 180.0120
LEU 190.0087
TYR 200.0014
GLN 210.0112
ASP 220.0125
LEU 230.0089
PRO 240.0101
VAL 250.0066
ARG 260.0302
SER 270.0202
GLU 280.0259
PHE 290.0260
GLU 300.0157
LEU 310.0078
ASP 320.0080
ARG 330.0073
ILE 340.0038
CYS 350.0005
GLY 360.0032
TYR 370.0031
GLY 380.0036
THR 390.0040
ALA 400.0039
ARG 410.0045
CYS 420.0043
ARG 430.0064
LYS 440.0069
LYS 450.0085
CYS 460.0071
ARG 470.0065
SER 480.0067
GLN 490.0055
GLU 500.0060
TYR 510.0056
ARG 520.0051
ILE 530.0051
GLY 540.0056
ARG 550.0061
CYS 560.0056
PRO 570.0093
ASN 580.0091
THR 590.0063
TYR 600.0046
ALA 610.0050
CYS 620.0048
CYS 630.0044
LEU 640.0044
ARG 650.0042
LYS 660.0053
TRP 670.0047
ASP 680.0036
GLU 690.0037
SER 700.0025
LEU 710.0017
LEU 720.0016
ASN 730.0026
ARG 740.0014
THR 750.0019
LYS 760.0070
PRO 770.0167
GLU 780.0184
ALA 790.0295
ALA 800.0323
ALA 810.0510
LYS 820.0390
LYS 830.0338
GLU 840.0246
MET 850.0197
ASN 860.0235
LEU 870.0204
SER 880.0211
VAL 890.0214
GLY 900.0209
LEU 910.0173
GLY 920.0231
GLY 930.0256
GLY 940.0259
SER 950.0188
ASN 960.0241
LEU 970.0244
SER 980.0246
VAL 990.0246
GLY 1000.0263
LEU 1010.0242
GLY 1020.0237
GLU 1030.0282
ILE 1040.0451
GLY 1050.0562
GLY 1060.0223
GLY 1070.0274
SER 1080.0283
LYS 1090.0320
LEU 1100.0405
LEU 1110.0225
ASP 1120.0180
ILE 1130.0113
ASN 1140.0092
LEU 1150.0074
GLY 1160.0233
ARG 1170.0286
GLY 1180.0237
GLY 1190.0284
GLY 1200.0242
SER 1210.0120
MET 1220.0104
VAL 1230.0114
ASP 1240.0091
LEU 1250.0107
THR 1260.0059
PHE 1270.0042
GLY 1280.0109
GLY 1290.0146
VAL 1300.0182
GLY 1310.0155
GLY 1320.0139
GLY 1330.0135
SER 1340.0113
THR 1350.0127
PHE 1360.0104
THR 1370.0097
PHE 1380.0086
PHE 1390.0080
PRO 1400.0073
LEU 1410.0170
VAL 1420.0286
ILE 1430.0262
GLY 1440.0358
GLY 1450.0390
GLY 1460.0382
SER 1470.0299
ASP 1480.0217
ALA 1490.0143
MET 1500.0108
TYR 1510.0097
LEU 1520.0068
GLY 1530.0068
PHE 1540.0091
ALA 1550.0106
ALA 1560.0126
GLY 1570.0143
GLY 1580.0134
GLY 1590.0170
SER 1600.0186
ALA 1610.0106
GLY 1620.0082
GLY 1630.0080
GLU 1640.0106
ASN 1650.0133
HIS 1660.0126
VAL 1670.0140
ALA 1680.0129
PHE 1690.0144
GLY 1700.0142
PRO 1710.0153
GLY 1720.0141
PRO 1730.0146
GLY 1740.0168
VAL 1750.0175
ASP 1760.0184
LEU 1770.0172
THR 1780.0194
PHE 1790.0215
GLY 1800.0267
GLY 1810.0410
VAL 1820.0352
GLN 1830.0256
PHE 1840.0232
ALA 1850.0225
MET 1860.0366
VAL 1870.0397
ASN 1880.0215
ASN 1890.0078
GLY 1900.0368
PRO 1910.0240
GLY 1920.0167
PRO 1930.0208
GLY 1940.0126
GLU 1950.0108
SER 1960.0451
PHE 1970.0325
THR 1980.0276
ALA 1990.0244
GLN 2000.0178
PRO 2010.0149
ALA 2020.0114
ASP 2030.0148
MET 2040.0158
GLN 2050.0259
ALA 2060.0312
GLY 2070.0267
ILE 2080.0334
LYS 2090.0216
GLY 2100.0371
PRO 2110.0228
GLY 2120.0182
PRO 2130.0124
GLY 2140.0132
GLY 2150.0092
SER 2160.0354
ILE 2170.0299
GLN 2180.0198
VAL 2190.0124
ILE 2200.0146
ASN 2210.0251
GLY 2220.0141
SER 2230.0087
THR 2240.0087
ILE 2250.0201
GLY 2260.0164
THR 2270.0132
GLY 2280.0137
SER 2290.0216
LYS 2300.0202
LYS 2310.0185
THR 2320.0150
ILE 2330.0151
LEU 2340.0111
ILE 2350.0126
TYR 2360.0097
SER 2370.0113
ILE 2380.0151
ILE 2390.0152
GLY 2400.0197
VAL 2410.0088
LYS 2420.0084
LYS 2430.0069
GLY 2440.0075
THR 2450.0095
LEU 2460.0210
ALA 2470.0174
TRP 2480.0108
ALA 2490.0113
ARG 2500.0073
THR 2510.0195
GLY 2520.0194
PHE 2530.0170
SER 2540.0171
PRO 2550.0151
ALA 2560.0367
LYS 2570.0342
LYS 2580.0234
LEU 2590.0221
ASN 2600.0494
ALA 2610.0768
GLY 2620.0451
VAL 2630.0458
VAL 2640.0624
ARG 2650.0162
VAL 2660.0198
PHE 2670.0122
PHE 2680.0108
LEU 2690.0082
ASN 2700.0073
GLN 2710.0044
LYS 2720.0016
LYS 2730.0049
ALA 2740.0044
LYS 2750.0010
ASP 2760.0065
VAL 2770.0058
LEU 2780.0038
ARG 2790.0083
LYS 2800.0108
THR 2810.0100
SER 2820.0099
ARG 2830.0084
PRO 2840.0122
MET 2850.0156
VAL 2860.0115
ASP 2870.0102
LEU 2880.0048
THR 2890.0046
PHE 2900.0029
GLY 2910.0075
GLY 2920.0167

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.