CNRS Nantes University US2B US2B
home |  start a new run |  job status |  references&downloads |  examples |  help  

Should you encounter any unexpected behaviour,
please let us know.
elNémo has been relocated.
**Some cleaning from time to time**
Sorry for the inconvenience.


***  TLR_8_simulation  ***

<R2> analysis for 2608260327253941399

---  normal mode 96  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0875
GLU 270.0054
PRO 280.0056
CYS 290.0041
VAL 300.0057
GLU 310.0057
VAL 320.0068
VAL 330.0057
PRO 340.0042
ASN 350.0014
ILE 360.0028
THR 370.0034
TYR 380.0025
GLN 390.0031
CYS 400.0015
MET 410.0025
GLU 420.0023
LEU 430.0016
ASN 440.0007
PHE 450.0006
TYR 460.0016
LYS 470.0023
ILE 480.0023
PRO 490.0016
ASP 500.0033
ASN 510.0036
LEU 520.0022
PRO 530.0021
PHE 540.0034
SER 550.0028
THR 560.0021
LYS 570.0034
ASN 580.0034
LEU 590.0027
ASP 600.0027
LEU 610.0021
SER 620.0025
PHE 630.0025
ASN 640.0020
PRO 650.0022
LEU 660.0024
ARG 670.0029
HIS 680.0027
LEU 690.0027
GLY 700.0027
SER 710.0026
TYR 720.0026
SER 730.0025
PHE 740.0028
PHE 750.0031
SER 760.0034
PHE 770.0034
PRO 780.0042
GLU 790.0041
LEU 800.0037
GLN 810.0040
VAL 820.0030
LEU 830.0028
ASP 840.0027
LEU 850.0025
SER 860.0024
ARG 870.0025
CYS 880.0026
GLU 890.0027
ILE 900.0025
GLN 910.0025
THR 920.0022
ILE 930.0020
GLU 940.0022
ASP 950.0018
GLY 960.0018
ALA 970.0021
TYR 980.0023
GLN 990.0023
SER 1000.0027
LEU 1010.0028
SER 1020.0022
HIS 1030.0028
LEU 1040.0022
SER 1050.0025
THR 1060.0022
LEU 1070.0013
ILE 1080.0015
LEU 1090.0013
THR 1100.0016
GLY 1110.0016
ASN 1120.0020
PRO 1130.0017
ILE 1140.0014
GLN 1150.0014
SER 1160.0017
LEU 1170.0011
ALA 1180.0015
LEU 1190.0017
GLY 1200.0015
ALA 1210.0012
PHE 1220.0009
SER 1230.0006
GLY 1240.0009
LEU 1250.0011
SER 1260.0009
SER 1270.0009
LEU 1280.0012
GLN 1290.0019
LYS 1300.0022
LEU 1310.0022
VAL 1320.0018
ALA 1330.0018
VAL 1340.0023
GLU 1350.0025
THR 1360.0020
ASN 1370.0027
LEU 1380.0026
ALA 1390.0028
SER 1400.0027
LEU 1410.0028
GLU 1420.0031
ASN 1430.0028
PHE 1440.0027
PRO 1450.0024
ILE 1460.0025
GLY 1470.0031
HIS 1480.0025
LEU 1490.0023
LYS 1500.0028
THR 1510.0025
LEU 1520.0028
LYS 1530.0028
GLU 1540.0028
LEU 1550.0028
ASN 1560.0028
VAL 1570.0017
ALA 1580.0019
HIS 1590.0025
ASN 1600.0025
LEU 1610.0030
ILE 1620.0026
GLN 1630.0027
SER 1640.0027
PHE 1650.0029
LYS 1660.0028
LEU 1670.0035
PRO 1680.0035
GLU 1690.0036
TYR 1700.0039
PHE 1710.0039
SER 1720.0041
ASN 1730.0038
LEU 1740.0037
THR 1750.0038
ASN 1760.0036
LEU 1770.0033
GLU 1780.0032
HIS 1790.0031
LEU 1800.0028
ASP 1810.0028
LEU 1820.0026
SER 1830.0027
SER 1840.0026
ASN 1850.0025
LYS 1860.0026
ILE 1870.0032
GLN 1880.0032
SER 1890.0027
ILE 1900.0025
TYR 1910.0018
CYS 1920.0019
THR 1930.0021
ASP 1940.0027
LEU 1950.0030
ARG 1960.0030
VAL 1970.0036
LEU 1980.0037
HIS 1990.0033
GLN 2000.0037
MET 2010.0042
PRO 2020.0034
LEU 2030.0037
LEU 2040.0037
ASN 2050.0038
LEU 2060.0036
SER 2070.0037
LEU 2080.0031
ASP 2090.0036
LEU 2100.0031
SER 2110.0041
LEU 2120.0042
ASN 2130.0038
PRO 2140.0039
MET 2150.0035
ASN 2160.0034
PHE 2170.0032
ILE 2180.0026
GLN 2190.0017
PRO 2200.0015
GLY 2210.0008
ALA 2220.0014
PHE 2230.0019
LYS 2240.0013
GLU 2250.0021
ILE 2260.0026
ARG 2270.0022
LEU 2280.0026
HIS 2290.0034
LYS 2300.0034
LEU 2310.0030
THR 2320.0043
LEU 2330.0043
ARG 2340.0052
ASN 2350.0058
ASN 2360.0053
PHE 2370.0069
ASP 2380.0084
SER 2390.0075
LEU 2400.0059
ASN 2410.0063
VAL 2420.0061
MET 2430.0050
LYS 2440.0042
THR 2450.0045
CYS 2460.0040
ILE 2470.0030
GLN 2480.0027
GLY 2490.0024
LEU 2500.0017
ALA 2510.0008
GLY 2520.0010
LEU 2530.0014
GLU 2540.0016
VAL 2550.0018
HIS 2560.0020
ARG 2570.0024
LEU 2580.0020
VAL 2590.0029
LEU 2600.0031
GLY 2610.0040
GLU 2620.0061
PHE 2630.0075
ARG 2640.0093
ASN 2650.0096
GLU 2660.0085
GLY 2670.0096
ASN 2680.0077
LEU 2690.0064
GLU 2700.0068
LYS 2710.0051
PHE 2720.0039
ASP 2730.0034
LYS 2740.0025
SER 2750.0031
ALA 2760.0030
LEU 2770.0020
GLU 2780.0023
GLY 2790.0022
LEU 2800.0010
CYS 2810.0013
ASN 2820.0015
LEU 2830.0008
THR 2840.0010
ILE 2850.0008
GLU 2860.0014
GLU 2870.0015
PHE 2880.0011
ARG 2890.0019
LEU 2900.0023
ALA 2910.0032
TYR 2920.0052
LEU 2930.0042
ASP 2940.0046
TYR 2950.0032
TYR 2960.0025
LEU 2970.0016
ASP 2980.0010
GLY 2990.0010
ILE 3000.0011
ILE 3010.0007
ASP 3020.0015
LEU 3030.0011
PHE 3040.0007
ASN 3050.0013
CYS 3060.0012
LEU 3070.0014
THR 3080.0017
ASN 3090.0019
VAL 3100.0015
SER 3110.0016
SER 3120.0015
PHE 3130.0011
SER 3140.0015
LEU 3150.0019
VAL 3160.0027
SER 3170.0038
VAL 3180.0031
THR 3190.0027
ILE 3200.0022
GLU 3210.0020
ARG 3220.0018
VAL 3230.0019
LYS 3240.0019
ASP 3250.0015
PHE 3260.0017
SER 3270.0016
TYR 3280.0015
ASN 3290.0014
PHE 3300.0014
GLY 3310.0014
TRP 3320.0018
GLN 3330.0018
HIS 3340.0015
LEU 3350.0014
GLU 3360.0014
LEU 3370.0020
VAL 3380.0023
ASN 3390.0027
CYS 3400.0024
LYS 3410.0027
PHE 3420.0023
GLY 3430.0027
GLN 3440.0025
PHE 3450.0020
PRO 3460.0020
THR 3470.0018
LEU 3480.0016
LYS 3490.0014
LEU 3500.0014
LYS 3510.0012
SER 3520.0013
LEU 3530.0012
LYS 3540.0010
ARG 3550.0010
LEU 3560.0011
THR 3570.0015
PHE 3580.0017
THR 3590.0017
SER 3600.0019
ASN 3610.0021
LYS 3620.0018
GLY 3630.0023
GLY 3640.0026
ASN 3650.0013
ALA 3660.0013
PHE 3670.0015
SER 3680.0016
GLU 3690.0014
VAL 3700.0014
ASP 3710.0014
LEU 3720.0010
PRO 3730.0009
SER 3740.0014
LEU 3750.0010
GLU 3760.0012
PHE 3770.0011
LEU 3780.0011
ASP 3790.0012
LEU 3800.0016
SER 3810.0015
ARG 3820.0022
ASN 3830.0021
GLY 3840.0021
LEU 3850.0022
SER 3860.0022
PHE 3870.0021
LYS 3880.0024
GLY 3890.0021
CYS 3900.0015
CYS 3910.0013
SER 3920.0010
GLN 3930.0012
SER 3940.0013
ASP 3950.0011
PHE 3960.0011
GLY 3970.0014
THR 3980.0015
ILE 3990.0020
SER 4000.0021
LEU 4010.0014
LYS 4020.0018
TYR 4030.0012
LEU 4040.0011
ASP 4050.0011
LEU 4060.0015
SER 4070.0027
PHE 4080.0028
ASN 4090.0028
GLY 4100.0027
VAL 4110.0025
ILE 4120.0021
THR 4130.0022
MET 4140.0015
SER 4150.0017
SER 4160.0014
ASN 4170.0011
PHE 4180.0013
LEU 4190.0019
GLY 4200.0022
LEU 4210.0017
GLU 4220.0028
GLN 4230.0025
LEU 4240.0021
GLU 4250.0023
HIS 4260.0021
LEU 4270.0013
ASP 4280.0011
PHE 4290.0014
GLN 4300.0012
HIS 4310.0016
SER 4320.0021
ASN 4330.0024
LEU 4340.0019
LYS 4350.0022
GLN 4360.0019
MET 4370.0020
SER 4380.0021
GLU 4390.0016
PHE 4400.0013
SER 4410.0017
VAL 4420.0015
PHE 4430.0019
LEU 4440.0024
SER 4450.0026
LEU 4460.0026
ARG 4470.0039
ASN 4480.0037
LEU 4490.0033
ILE 4500.0037
TYR 4510.0034
LEU 4520.0021
ASP 4530.0019
ILE 4540.0015
SER 4550.0018
HIS 4560.0018
THR 4570.0022
HIS 4580.0028
THR 4590.0024
ARG 4600.0030
VAL 4610.0029
ALA 4620.0033
PHE 4630.0030
ASN 4640.0034
GLY 4650.0031
ILE 4660.0031
PHE 4670.0035
ASN 4680.0035
GLY 4690.0036
LEU 4700.0039
SER 4710.0046
SER 4720.0048
LEU 4730.0044
GLU 4740.0049
VAL 4750.0046
LEU 4760.0041
LYS 4770.0034
MET 4780.0029
ALA 4790.0032
GLY 4800.0030
ASN 4810.0025
SER 4820.0035
PHE 4830.0036
GLN 4840.0039
GLU 4850.0037
ASN 4860.0034
PHE 4870.0033
LEU 4880.0034
PRO 4890.0035
ASP 4900.0037
ILE 4910.0040
PHE 4920.0041
THR 4930.0042
GLU 4940.0044
LEU 4950.0046
ARG 4960.0048
ASN 4970.0050
LEU 4980.0048
THR 4990.0050
PHE 5000.0048
LEU 5010.0043
ASP 5020.0036
LEU 5030.0031
SER 5040.0032
GLN 5050.0031
CYS 5060.0025
GLN 5070.0026
LEU 5080.0024
GLU 5090.0022
GLN 5100.0022
LEU 5110.0023
SER 5120.0027
PRO 5130.0024
THR 5140.0031
ALA 5150.0033
PHE 5160.0033
ASN 5170.0034
SER 5180.0043
LEU 5190.0041
SER 5200.0037
SER 5210.0041
LEU 5220.0036
GLN 5230.0037
VAL 5240.0036
LEU 5250.0030
ASN 5260.0030
MET 5270.0018
SER 5280.0021
HIS 5290.0024
ASN 5300.0020
ASN 5310.0018
PHE 5320.0020
PHE 5330.0026
SER 5340.0023
LEU 5350.0019
ASP 5360.0017
THR 5370.0009
PHE 5380.0012
PRO 5390.0011
TYR 5400.0010
LYS 5410.0019
CYS 5420.0024
LEU 5430.0021
ASN 5440.0022
SER 5450.0023
LEU 5460.0018
GLN 5470.0011
VAL 5480.0012
LEU 5490.0008
ASP 5500.0012
TYR 5510.0012
SER 5520.0016
LEU 5530.0021
ASN 5540.0020
HIS 5550.0026
ILE 5560.0027
MET 5570.0034
THR 5580.0034
SER 5590.0032
LYS 5600.0036
LYS 5610.0035
GLN 5620.0034
GLU 5630.0025
LEU 5640.0027
GLN 5650.0031
HIS 5660.0023
PHE 5670.0015
PRO 5680.0015
SER 5690.0019
SER 5700.0009
LEU 5710.0008
ALA 5720.0022
PHE 5730.0022
LEU 5740.0023
ASN 5750.0024
LEU 5760.0026
THR 5770.0028
GLN 5780.0028
ASN 5790.0029
ASP 5800.0032
PHE 5810.0035
ALA 5820.0023
CYS 5830.0009
THR 5840.0013
CYS 5850.0034
GLU 5860.0038
HIS 5870.0024
GLN 5880.0021
SER 5890.0029
PHE 5900.0028
LEU 5910.0017
GLN 5920.0016
TRP 5930.0025
ILE 5940.0024
LYS 5950.0017
ASP 5960.0024
GLN 5970.0031
ARG 5980.0030
GLN 5990.0033
LEU 6000.0035
LEU 6010.0033
VAL 6020.0038
GLU 6030.0036
VAL 6040.0028
GLU 6050.0029
ARG 6060.0032
MET 6070.0038
GLU 6080.0038
CYS 6090.0035
ALA 6100.0051
THR 6110.0047
PRO 6120.0062
SER 6130.0106
ASP 6140.0113
LYS 6150.0076
GLN 6160.0089
GLY 6170.0067
MET 6180.0049
PRO 6190.0034
VAL 6200.0020
LEU 6210.0006
SER 6220.0034
LEU 6230.0026
ASN 6240.0034
ILE 6250.0031
THR 6260.0045
CYS 6270.0053
GLU 10.0121
ALA 20.0112
ALA 30.0060
ALA 40.0064
LYS 50.0097
MET 60.0051
GLN 70.0090
ARG 80.0101
LEU 90.0069
VAL 100.0090
LEU 110.0039
LEU 120.0043
LEU 130.0032
ALA 140.0061
ILE 150.0070
SER 160.0062
LEU 170.0063
LEU 180.0150
LEU 190.0142
TYR 200.0057
GLN 210.0113
ASP 220.0143
LEU 230.0092
PRO 240.0078
VAL 250.0055
ARG 260.0147
SER 270.0101
GLU 280.0142
PHE 290.0149
GLU 300.0093
LEU 310.0049
ASP 320.0060
ARG 330.0061
ILE 340.0038
CYS 350.0025
GLY 360.0022
TYR 370.0012
GLY 380.0017
THR 390.0027
ALA 400.0034
ARG 410.0047
CYS 420.0053
ARG 430.0066
LYS 440.0077
LYS 450.0081
CYS 460.0059
ARG 470.0051
SER 480.0052
GLN 490.0053
GLU 500.0059
TYR 510.0055
ARG 520.0055
ILE 530.0062
GLY 540.0065
ARG 550.0066
CYS 560.0056
PRO 570.0068
ASN 580.0076
THR 590.0059
TYR 600.0066
ALA 610.0056
CYS 620.0055
CYS 630.0054
LEU 640.0055
ARG 650.0053
LYS 660.0067
TRP 670.0064
ASP 680.0051
GLU 690.0054
SER 700.0041
LEU 710.0047
LEU 720.0041
ASN 730.0025
ARG 740.0014
THR 750.0023
LYS 760.0046
PRO 770.0152
GLU 780.0187
ALA 790.0295
ALA 800.0313
ALA 810.0305
LYS 820.0220
LYS 830.0218
GLU 840.0128
MET 850.0153
ASN 860.0089
LEU 870.0120
SER 880.0104
VAL 890.0122
GLY 900.0114
LEU 910.0109
GLY 920.0180
GLY 930.0289
GLY 940.0351
SER 950.0245
ASN 960.0104
LEU 970.0121
SER 980.0110
VAL 990.0155
GLY 1000.0142
LEU 1010.0169
GLY 1020.0076
GLU 1030.0117
ILE 1040.0109
GLY 1050.0195
GLY 1060.0258
GLY 1070.0160
SER 1080.0160
LYS 1090.0153
LEU 1100.0212
LEU 1110.0169
ASP 1120.0173
ILE 1130.0200
ASN 1140.0201
LEU 1150.0220
GLY 1160.0329
ARG 1170.0343
GLY 1180.0277
GLY 1190.0366
GLY 1200.0398
SER 1210.0210
MET 1220.0163
VAL 1230.0138
ASP 1240.0118
LEU 1250.0077
THR 1260.0089
PHE 1270.0066
GLY 1280.0082
GLY 1290.0082
VAL 1300.0130
GLY 1310.0224
GLY 1320.0235
GLY 1330.0211
SER 1340.0195
THR 1350.0162
PHE 1360.0130
THR 1370.0136
PHE 1380.0125
PHE 1390.0135
PRO 1400.0122
LEU 1410.0227
VAL 1420.0356
ILE 1430.0336
GLY 1440.0514
GLY 1450.0555
GLY 1460.0587
SER 1470.0492
ASP 1480.0426
ALA 1490.0275
MET 1500.0169
TYR 1510.0170
LEU 1520.0147
GLY 1530.0097
PHE 1540.0099
ALA 1550.0086
ALA 1560.0168
GLY 1570.0166
GLY 1580.0190
GLY 1590.0187
SER 1600.0196
ALA 1610.0130
GLY 1620.0099
GLY 1630.0044
GLU 1640.0060
ASN 1650.0057
HIS 1660.0084
VAL 1670.0068
ALA 1680.0089
PHE 1690.0074
GLY 1700.0102
PRO 1710.0143
GLY 1720.0155
PRO 1730.0143
GLY 1740.0133
VAL 1750.0103
ASP 1760.0088
LEU 1770.0080
THR 1780.0067
PHE 1790.0060
GLY 1800.0069
GLY 1810.0159
VAL 1820.0151
GLN 1830.0114
PHE 1840.0129
ALA 1850.0126
MET 1860.0163
VAL 1870.0143
ASN 1880.0159
ASN 1890.0188
GLY 1900.0218
PRO 1910.0328
GLY 1920.0196
PRO 1930.0038
GLY 1940.0164
GLU 1950.0052
SER 1960.0066
PHE 1970.0017
THR 1980.0055
ALA 1990.0018
GLN 2000.0057
PRO 2010.0029
ALA 2020.0041
ASP 2030.0064
MET 2040.0068
GLN 2050.0089
ALA 2060.0166
GLY 2070.0088
ILE 2080.0112
LYS 2090.0073
GLY 2100.0153
PRO 2110.0156
GLY 2120.0106
PRO 2130.0275
GLY 2140.0257
GLY 2150.0308
SER 2160.0172
ILE 2170.0162
GLN 2180.0238
VAL 2190.0352
ILE 2200.0393
ASN 2210.0328
GLY 2220.0332
SER 2230.0428
THR 2240.0406
ILE 2250.0360
GLY 2260.0448
THR 2270.0502
GLY 2280.0407
SER 2290.0378
LYS 2300.0168
LYS 2310.0156
THR 2320.0123
ILE 2330.0045
LEU 2340.0041
ILE 2350.0104
TYR 2360.0247
SER 2370.0332
ILE 2380.0298
ILE 2390.0296
GLY 2400.0286
VAL 2410.0150
LYS 2420.0085
LYS 2430.0071
GLY 2440.0076
THR 2450.0039
LEU 2460.0087
ALA 2470.0171
TRP 2480.0139
ALA 2490.0235
ARG 2500.0197
THR 2510.0069
GLY 2520.0193
PHE 2530.0195
SER 2540.0250
PRO 2550.0446
ALA 2560.0226
LYS 2570.0097
LYS 2580.0228
LEU 2590.0373
ASN 2600.0479
ALA 2610.0875
GLY 2620.0523
VAL 2630.0264
VAL 2640.0611
ARG 2650.0410
VAL 2660.0224
PHE 2670.0190
PHE 2680.0167
LEU 2690.0211
ASN 2700.0253
GLN 2710.0151
LYS 2720.0117
LYS 2730.0110
ALA 2740.0130
LYS 2750.0108
ASP 2760.0135
VAL 2770.0174
LEU 2780.0208
ARG 2790.0200
LYS 2800.0198
THR 2810.0233
SER 2820.0088
ARG 2830.0103
PRO 2840.0120
MET 2850.0178
VAL 2860.0078
ASP 2870.0074
LEU 2880.0092
THR 2890.0088
PHE 2900.0061
GLY 2910.0125
GLY 2920.0182

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.