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***  TLR_8_simulation  ***

<R2> analysis for 2608260327253941399

---  normal mode 98  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0768
GLU 270.0038
PRO 280.0045
CYS 290.0036
VAL 300.0044
GLU 310.0046
VAL 320.0050
VAL 330.0053
PRO 340.0050
ASN 350.0039
ILE 360.0042
THR 370.0031
TYR 380.0024
GLN 390.0023
CYS 400.0019
MET 410.0020
GLU 420.0025
LEU 430.0031
ASN 440.0035
PHE 450.0029
TYR 460.0038
LYS 470.0033
ILE 480.0025
PRO 490.0019
ASP 500.0022
ASN 510.0016
LEU 520.0016
PRO 530.0020
PHE 540.0024
SER 550.0030
THR 560.0023
LYS 570.0022
ASN 580.0019
LEU 590.0015
ASP 600.0012
LEU 610.0012
SER 620.0011
PHE 630.0012
ASN 640.0016
PRO 650.0025
LEU 660.0026
ARG 670.0029
HIS 680.0025
LEU 690.0020
GLY 700.0017
SER 710.0013
TYR 720.0017
SER 730.0019
PHE 740.0020
PHE 750.0018
SER 760.0020
PHE 770.0019
PRO 780.0022
GLU 790.0021
LEU 800.0020
GLN 810.0021
VAL 820.0023
LEU 830.0023
ASP 840.0024
LEU 850.0024
SER 860.0025
ARG 870.0027
CYS 880.0022
GLU 890.0027
ILE 900.0025
GLN 910.0031
THR 920.0022
ILE 930.0017
GLU 940.0013
ASP 950.0008
GLY 960.0006
ALA 970.0014
TYR 980.0015
GLN 990.0012
SER 1000.0013
LEU 1010.0016
SER 1020.0018
HIS 1030.0021
LEU 1040.0022
SER 1050.0026
THR 1060.0028
LEU 1070.0030
ILE 1080.0033
LEU 1090.0030
THR 1100.0037
GLY 1110.0041
ASN 1120.0032
PRO 1130.0038
ILE 1140.0030
GLN 1150.0038
SER 1160.0033
LEU 1170.0015
ALA 1180.0018
LEU 1190.0020
GLY 1200.0017
ALA 1210.0009
PHE 1220.0008
SER 1230.0011
GLY 1240.0015
LEU 1250.0019
SER 1260.0025
SER 1270.0033
LEU 1280.0031
GLN 1290.0033
LYS 1300.0031
LEU 1310.0028
VAL 1320.0042
ALA 1330.0032
VAL 1340.0046
GLU 1350.0054
THR 1360.0038
ASN 1370.0056
LEU 1380.0044
ALA 1390.0060
SER 1400.0049
LEU 1410.0031
GLU 1420.0055
ASN 1430.0053
PHE 1440.0031
PRO 1450.0036
ILE 1460.0032
GLY 1470.0040
HIS 1480.0044
LEU 1490.0037
LYS 1500.0052
THR 1510.0053
LEU 1520.0035
LYS 1530.0037
GLU 1540.0030
LEU 1550.0020
ASN 1560.0022
VAL 1570.0033
ALA 1580.0056
HIS 1590.0074
ASN 1600.0057
LEU 1610.0070
ILE 1620.0057
GLN 1630.0072
SER 1640.0055
PHE 1650.0032
LYS 1660.0032
LEU 1670.0028
PRO 1680.0051
GLU 1690.0070
TYR 1700.0065
PHE 1710.0048
SER 1720.0069
ASN 1730.0067
LEU 1740.0052
THR 1750.0069
ASN 1760.0065
LEU 1770.0033
GLU 1780.0034
HIS 1790.0030
LEU 1800.0019
ASP 1810.0027
LEU 1820.0037
SER 1830.0057
SER 1840.0073
ASN 1850.0064
LYS 1860.0077
ILE 1870.0058
GLN 1880.0071
SER 1890.0061
ILE 1900.0046
TYR 1910.0038
CYS 1920.0014
THR 1930.0034
ASP 1940.0023
LEU 1950.0012
ARG 1960.0040
VAL 1970.0046
LEU 1980.0041
HIS 1990.0053
GLN 2000.0074
MET 2010.0073
PRO 2020.0065
LEU 2030.0073
LEU 2040.0052
ASN 2050.0057
LEU 2060.0040
SER 2070.0048
LEU 2080.0044
ASP 2090.0053
LEU 2100.0051
SER 2110.0063
LEU 2120.0064
ASN 2130.0062
PRO 2140.0069
MET 2150.0074
ASN 2160.0082
PHE 2170.0077
ILE 2180.0064
GLN 2190.0047
PRO 2200.0047
GLY 2210.0039
ALA 2220.0034
PHE 2230.0047
LYS 2240.0052
GLU 2250.0059
ILE 2260.0052
ARG 2270.0042
LEU 2280.0045
HIS 2290.0055
LYS 2300.0058
LEU 2310.0055
THR 2320.0063
LEU 2330.0061
ARG 2340.0061
ASN 2350.0061
ASN 2360.0061
PHE 2370.0080
ASP 2380.0076
SER 2390.0071
LEU 2400.0066
ASN 2410.0076
VAL 2420.0082
MET 2430.0082
LYS 2440.0077
THR 2450.0080
CYS 2460.0086
ILE 2470.0080
GLN 2480.0072
GLY 2490.0066
LEU 2500.0072
ALA 2510.0070
GLY 2520.0078
LEU 2530.0067
GLU 2540.0059
VAL 2550.0052
HIS 2560.0046
ARG 2570.0056
LEU 2580.0047
VAL 2590.0047
LEU 2600.0040
GLY 2610.0039
GLU 2620.0055
PHE 2630.0054
ARG 2640.0048
ASN 2650.0057
GLU 2660.0066
GLY 2670.0067
ASN 2680.0057
LEU 2690.0058
GLU 2700.0057
LYS 2710.0049
PHE 2720.0041
ASP 2730.0029
LYS 2740.0028
SER 2750.0039
ALA 2760.0053
LEU 2770.0068
GLU 2780.0068
GLY 2790.0073
LEU 2800.0074
CYS 2810.0073
ASN 2820.0073
LEU 2830.0067
THR 2840.0061
ILE 2850.0054
GLU 2860.0051
GLU 2870.0050
PHE 2880.0044
ARG 2890.0041
LEU 2900.0036
ALA 2910.0036
TYR 2920.0040
LEU 2930.0035
ASP 2940.0043
TYR 2950.0037
TYR 2960.0032
LEU 2970.0040
ASP 2980.0051
GLY 2990.0046
ILE 3000.0041
ILE 3010.0045
ASP 3020.0049
LEU 3030.0049
PHE 3040.0056
ASN 3050.0061
CYS 3060.0069
LEU 3070.0059
THR 3080.0058
ASN 3090.0064
VAL 3100.0057
SER 3110.0054
SER 3120.0051
PHE 3130.0046
SER 3140.0043
LEU 3150.0038
VAL 3160.0036
SER 3170.0032
VAL 3180.0029
THR 3190.0037
ILE 3200.0045
GLU 3210.0058
ARG 3220.0068
VAL 3230.0063
LYS 3240.0069
ASP 3250.0056
PHE 3260.0061
SER 3270.0061
TYR 3280.0061
ASN 3290.0061
PHE 3300.0061
GLY 3310.0061
TRP 3320.0054
GLN 3330.0053
HIS 3340.0051
LEU 3350.0051
GLU 3360.0052
LEU 3370.0045
VAL 3380.0045
ASN 3390.0046
CYS 3400.0045
LYS 3410.0048
PHE 3420.0064
GLY 3430.0078
GLN 3440.0073
PHE 3450.0065
PRO 3460.0049
THR 3470.0060
LEU 3480.0056
LYS 3490.0051
LEU 3500.0051
LYS 3510.0050
SER 3520.0045
LEU 3530.0047
LYS 3540.0046
ARG 3550.0053
LEU 3560.0054
THR 3570.0055
PHE 3580.0055
THR 3590.0061
SER 3600.0066
ASN 3610.0062
LYS 3620.0059
GLY 3630.0071
GLY 3640.0077
ASN 3650.0066
ALA 3660.0073
PHE 3670.0051
SER 3680.0044
GLU 3690.0035
VAL 3700.0037
ASP 3710.0032
LEU 3720.0033
PRO 3730.0029
SER 3740.0034
LEU 3750.0038
GLU 3760.0049
PHE 3770.0057
LEU 3780.0052
ASP 3790.0061
LEU 3800.0058
SER 3810.0067
ARG 3820.0077
ASN 3830.0070
GLY 3840.0077
LEU 3850.0070
SER 3860.0073
PHE 3870.0040
LYS 3880.0038
GLY 3890.0024
CYS 3900.0009
CYS 3910.0007
SER 3920.0021
GLN 3930.0024
SER 3940.0019
ASP 3950.0016
PHE 3960.0021
GLY 3970.0022
THR 3980.0028
ILE 3990.0041
SER 4000.0051
LEU 4010.0043
LYS 4020.0059
TYR 4030.0054
LEU 4040.0040
ASP 4050.0050
LEU 4060.0045
SER 4070.0067
PHE 4080.0078
ASN 4090.0070
GLY 4100.0072
VAL 4110.0069
ILE 4120.0047
THR 4130.0046
MET 4140.0030
SER 4150.0049
SER 4160.0046
ASN 4170.0042
PHE 4180.0036
LEU 4190.0052
GLY 4200.0055
LEU 4210.0047
GLU 4220.0059
GLN 4230.0063
LEU 4240.0048
GLU 4250.0055
HIS 4260.0047
LEU 4270.0021
ASP 4280.0027
PHE 4290.0029
GLN 4300.0047
HIS 4310.0062
SER 4320.0059
ASN 4330.0063
LEU 4340.0046
LYS 4350.0059
GLN 4360.0063
MET 4370.0047
SER 4380.0057
GLU 4390.0072
PHE 4400.0068
SER 4410.0057
VAL 4420.0044
PHE 4430.0040
LEU 4440.0053
SER 4450.0057
LEU 4460.0049
ARG 4470.0055
ASN 4480.0054
LEU 4490.0041
ILE 4500.0039
TYR 4510.0033
LEU 4520.0015
ASP 4530.0010
ILE 4540.0019
SER 4550.0024
HIS 4560.0039
THR 4570.0040
HIS 4580.0048
THR 4590.0038
ARG 4600.0041
VAL 4610.0034
ALA 4620.0041
PHE 4630.0044
ASN 4640.0041
GLY 4650.0047
ILE 4660.0043
PHE 4670.0039
ASN 4680.0040
GLY 4690.0043
LEU 4700.0044
SER 4710.0045
SER 4720.0044
LEU 4730.0042
GLU 4740.0049
VAL 4750.0048
LEU 4760.0037
LYS 4770.0026
MET 4780.0024
ALA 4790.0020
GLY 4800.0025
ASN 4810.0027
SER 4820.0038
PHE 4830.0014
GLN 4840.0014
GLU 4850.0036
ASN 4860.0041
PHE 4870.0035
LEU 4880.0017
PRO 4890.0026
ASP 4900.0040
ILE 4910.0036
PHE 4920.0038
THR 4930.0046
GLU 4940.0050
LEU 4950.0060
ARG 4960.0076
ASN 4970.0082
LEU 4980.0071
THR 4990.0084
PHE 5000.0073
LEU 5010.0054
ASP 5020.0050
LEU 5030.0035
SER 5040.0048
GLN 5050.0057
CYS 5060.0043
GLN 5070.0068
LEU 5080.0049
GLU 5090.0066
GLN 5100.0058
LEU 5110.0042
SER 5120.0058
PRO 5130.0072
THR 5140.0078
ALA 5150.0050
PHE 5160.0061
ASN 5170.0084
SER 5180.0096
LEU 5190.0090
SER 5200.0113
SER 5210.0119
LEU 5220.0098
GLN 5230.0104
VAL 5240.0085
LEU 5250.0056
ASN 5260.0054
MET 5270.0042
SER 5280.0068
HIS 5290.0088
ASN 5300.0076
ASN 5310.0086
PHE 5320.0072
PHE 5330.0086
SER 5340.0070
LEU 5350.0046
ASP 5360.0046
THR 5370.0042
PHE 5380.0067
PRO 5390.0052
TYR 5400.0049
LYS 5410.0078
CYS 5420.0106
LEU 5430.0094
ASN 5440.0122
SER 5450.0121
LEU 5460.0090
GLN 5470.0083
VAL 5480.0066
LEU 5490.0038
ASP 5500.0051
TYR 5510.0048
SER 5520.0069
LEU 5530.0087
ASN 5540.0084
HIS 5550.0090
ILE 5560.0073
MET 5570.0077
THR 5580.0065
SER 5590.0048
LYS 5600.0061
LYS 5610.0055
GLN 5620.0081
GLU 5630.0063
LEU 5640.0042
GLN 5650.0050
HIS 5660.0052
PHE 5670.0053
PRO 5680.0074
SER 5690.0088
SER 5700.0089
LEU 5710.0057
ALA 5720.0023
PHE 5730.0030
LEU 5740.0031
ASN 5750.0052
LEU 5760.0064
THR 5770.0056
GLN 5780.0058
ASN 5790.0059
ASP 5800.0056
PHE 5810.0050
ALA 5820.0059
CYS 5830.0064
THR 5840.0107
CYS 5850.0133
GLU 5860.0148
HIS 5870.0075
GLN 5880.0077
SER 5890.0101
PHE 5900.0084
LEU 5910.0056
GLN 5920.0074
TRP 5930.0077
ILE 5940.0068
LYS 5950.0081
ASP 5960.0094
GLN 5970.0080
ARG 5980.0081
GLN 5990.0082
LEU 6000.0073
LEU 6010.0071
VAL 6020.0074
GLU 6030.0064
VAL 6040.0051
GLU 6050.0049
ARG 6060.0048
MET 6070.0058
GLU 6080.0042
CYS 6090.0036
ALA 6100.0049
THR 6110.0079
PRO 6120.0174
SER 6130.0208
ASP 6140.0234
LYS 6150.0154
GLN 6160.0144
GLY 6170.0118
MET 6180.0089
PRO 6190.0066
VAL 6200.0022
LEU 6210.0050
SER 6220.0037
LEU 6230.0019
ASN 6240.0039
ILE 6250.0066
THR 6260.0093
CYS 6270.0133
GLU 10.0095
ALA 20.0074
ALA 30.0065
ALA 40.0088
LYS 50.0086
MET 60.0060
GLN 70.0076
ARG 80.0076
LEU 90.0063
VAL 100.0073
LEU 110.0039
LEU 120.0033
LEU 130.0041
ALA 140.0053
ILE 150.0050
SER 160.0025
LEU 170.0020
LEU 180.0047
LEU 190.0042
TYR 200.0012
GLN 210.0047
ASP 220.0040
LEU 230.0043
PRO 240.0043
VAL 250.0046
ARG 260.0155
SER 270.0122
GLU 280.0154
PHE 290.0183
GLU 300.0141
LEU 310.0079
ASP 320.0092
ARG 330.0104
ILE 340.0082
CYS 350.0067
GLY 360.0084
TYR 370.0069
GLY 380.0065
THR 390.0077
ALA 400.0086
ARG 410.0092
CYS 420.0109
ARG 430.0152
LYS 440.0186
LYS 450.0195
CYS 460.0131
ARG 470.0122
SER 480.0128
GLN 490.0118
GLU 500.0122
TYR 510.0114
ARG 520.0099
ILE 530.0078
GLY 540.0074
ARG 550.0087
CYS 560.0102
PRO 570.0141
ASN 580.0186
THR 590.0162
TYR 600.0162
ALA 610.0103
CYS 620.0090
CYS 630.0094
LEU 640.0089
ARG 650.0093
LYS 660.0084
TRP 670.0072
ASP 680.0051
GLU 690.0032
SER 700.0020
LEU 710.0046
LEU 720.0050
ASN 730.0067
ARG 740.0060
THR 750.0064
LYS 760.0255
PRO 770.0439
GLU 780.0486
ALA 790.0725
ALA 800.0768
ALA 810.0482
LYS 820.0351
LYS 830.0307
GLU 840.0177
MET 850.0162
ASN 860.0084
LEU 870.0096
SER 880.0088
VAL 890.0098
GLY 900.0090
LEU 910.0069
GLY 920.0222
GLY 930.0432
GLY 940.0362
SER 950.0235
ASN 960.0106
LEU 970.0112
SER 980.0113
VAL 990.0120
GLY 1000.0122
LEU 1010.0144
GLY 1020.0198
GLU 1030.0246
ILE 1040.0319
GLY 1050.0375
GLY 1060.0225
GLY 1070.0252
SER 1080.0311
LYS 1090.0218
LEU 1100.0287
LEU 1110.0118
ASP 1120.0153
ILE 1130.0149
ASN 1140.0242
LEU 1150.0227
GLY 1160.0221
ARG 1170.0219
GLY 1180.0295
GLY 1190.0346
GLY 1200.0214
SER 1210.0089
MET 1220.0090
VAL 1230.0091
ASP 1240.0100
LEU 1250.0098
THR 1260.0107
PHE 1270.0061
GLY 1280.0083
GLY 1290.0094
VAL 1300.0165
GLY 1310.0223
GLY 1320.0259
GLY 1330.0253
SER 1340.0237
THR 1350.0211
PHE 1360.0096
THR 1370.0081
PHE 1380.0051
PHE 1390.0045
PRO 1400.0053
LEU 1410.0081
VAL 1420.0155
ILE 1430.0140
GLY 1440.0237
GLY 1450.0217
GLY 1460.0393
SER 1470.0382
ASP 1480.0345
ALA 1490.0247
MET 1500.0121
TYR 1510.0125
LEU 1520.0099
GLY 1530.0122
PHE 1540.0104
ALA 1550.0137
ALA 1560.0263
GLY 1570.0277
GLY 1580.0290
GLY 1590.0257
SER 1600.0215
ALA 1610.0225
GLY 1620.0196
GLY 1630.0157
GLU 1640.0129
ASN 1650.0128
HIS 1660.0120
VAL 1670.0109
ALA 1680.0115
PHE 1690.0110
GLY 1700.0119
PRO 1710.0219
GLY 1720.0201
PRO 1730.0177
GLY 1740.0143
VAL 1750.0133
ASP 1760.0120
LEU 1770.0149
THR 1780.0125
PHE 1790.0152
GLY 1800.0127
GLY 1810.0159
VAL 1820.0226
GLN 1830.0203
PHE 1840.0264
ALA 1850.0264
MET 1860.0197
VAL 1870.0174
ASN 1880.0139
ASN 1890.0168
GLY 1900.0264
PRO 1910.0242
GLY 1920.0194
PRO 1930.0047
GLY 1940.0117
GLU 1950.0075
SER 1960.0198
PHE 1970.0140
THR 1980.0116
ALA 1990.0079
GLN 2000.0035
PRO 2010.0042
ALA 2020.0024
ASP 2030.0029
MET 2040.0030
GLN 2050.0034
ALA 2060.0078
GLY 2070.0068
ILE 2080.0059
LYS 2090.0037
GLY 2100.0041
PRO 2110.0066
GLY 2120.0116
PRO 2130.0149
GLY 2140.0198
GLY 2150.0159
SER 2160.0150
ILE 2170.0143
GLN 2180.0198
VAL 2190.0225
ILE 2200.0282
ASN 2210.0426
GLY 2220.0435
SER 2230.0300
THR 2240.0095
ILE 2250.0104
GLY 2260.0182
THR 2270.0243
GLY 2280.0187
SER 2290.0192
LYS 2300.0142
LYS 2310.0321
THR 2320.0377
ILE 2330.0256
LEU 2340.0242
ILE 2350.0226
TYR 2360.0135
SER 2370.0230
ILE 2380.0278
ILE 2390.0345
GLY 2400.0405
VAL 2410.0241
LYS 2420.0205
LYS 2430.0174
GLY 2440.0171
THR 2450.0202
LEU 2460.0300
ALA 2470.0332
TRP 2480.0217
ALA 2490.0260
ARG 2500.0170
THR 2510.0205
GLY 2520.0193
PHE 2530.0180
SER 2540.0165
PRO 2550.0173
ALA 2560.0203
LYS 2570.0220
LYS 2580.0209
LEU 2590.0218
ASN 2600.0282
ALA 2610.0182
GLY 2620.0053
VAL 2630.0165
VAL 2640.0278
ARG 2650.0300
VAL 2660.0186
PHE 2670.0163
PHE 2680.0314
LEU 2690.0263
ASN 2700.0334
GLN 2710.0153
LYS 2720.0121
LYS 2730.0194
ALA 2740.0151
LYS 2750.0142
ASP 2760.0150
VAL 2770.0114
LEU 2780.0162
ARG 2790.0164
LYS 2800.0094
THR 2810.0236
SER 2820.0372
ARG 2830.0139
PRO 2840.0194
MET 2850.0151
VAL 2860.0316
ASP 2870.0258
LEU 2880.0150
THR 2890.0085
PHE 2900.0124
GLY 2910.0234
GLY 2920.0258

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elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.