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***  TLR_8_simulation  ***

<R2> analysis for 2608260327253941399

---  normal mode 99  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0619
GLU 270.0045
PRO 280.0057
CYS 290.0040
VAL 300.0041
GLU 310.0024
VAL 320.0038
VAL 330.0035
PRO 340.0022
ASN 350.0033
ILE 360.0039
THR 370.0029
TYR 380.0020
GLN 390.0034
CYS 400.0031
MET 410.0048
GLU 420.0056
LEU 430.0052
ASN 440.0045
PHE 450.0029
TYR 460.0022
LYS 470.0020
ILE 480.0011
PRO 490.0016
ASP 500.0025
ASN 510.0030
LEU 520.0020
PRO 530.0029
PHE 540.0038
SER 550.0040
THR 560.0027
LYS 570.0031
ASN 580.0027
LEU 590.0020
ASP 600.0025
LEU 610.0024
SER 620.0035
PHE 630.0039
ASN 640.0029
PRO 650.0025
LEU 660.0016
ARG 670.0028
HIS 680.0027
LEU 690.0025
GLY 700.0026
SER 710.0025
TYR 720.0017
SER 730.0017
PHE 740.0012
PHE 750.0013
SER 760.0017
PHE 770.0018
PRO 780.0021
GLU 790.0025
LEU 800.0020
GLN 810.0024
VAL 820.0014
LEU 830.0015
ASP 840.0018
LEU 850.0022
SER 860.0027
ARG 870.0027
CYS 880.0025
GLU 890.0029
ILE 900.0028
GLN 910.0032
THR 920.0032
ILE 930.0027
GLU 940.0031
ASP 950.0030
GLY 960.0026
ALA 970.0021
TYR 980.0016
GLN 990.0019
SER 1000.0016
LEU 1010.0013
SER 1020.0011
HIS 1030.0009
LEU 1040.0009
SER 1050.0015
THR 1060.0013
LEU 1070.0006
ILE 1080.0005
LEU 1090.0010
THR 1100.0012
GLY 1110.0018
ASN 1120.0024
PRO 1130.0029
ILE 1140.0026
GLN 1150.0030
SER 1160.0029
LEU 1170.0026
ALA 1180.0028
LEU 1190.0024
GLY 1200.0027
ALA 1210.0019
PHE 1220.0013
SER 1230.0020
GLY 1240.0021
LEU 1250.0015
SER 1260.0023
SER 1270.0023
LEU 1280.0022
GLN 1290.0024
LYS 1300.0023
LEU 1310.0021
VAL 1320.0016
ALA 1330.0011
VAL 1340.0017
GLU 1350.0017
THR 1360.0010
ASN 1370.0032
LEU 1380.0031
ALA 1390.0033
SER 1400.0032
LEU 1410.0031
GLU 1420.0030
ASN 1430.0027
PHE 1440.0025
PRO 1450.0021
ILE 1460.0025
GLY 1470.0031
HIS 1480.0028
LEU 1490.0028
LYS 1500.0035
THR 1510.0034
LEU 1520.0034
LYS 1530.0036
GLU 1540.0034
LEU 1550.0030
ASN 1560.0030
VAL 1570.0027
ALA 1580.0030
HIS 1590.0030
ASN 1600.0029
LEU 1610.0033
ILE 1620.0042
GLN 1630.0041
SER 1640.0040
PHE 1650.0041
LYS 1660.0038
LEU 1670.0041
PRO 1680.0039
GLU 1690.0038
TYR 1700.0040
PHE 1710.0042
SER 1720.0043
ASN 1730.0040
LEU 1740.0041
THR 1750.0043
ASN 1760.0043
LEU 1770.0041
GLU 1780.0043
HIS 1790.0042
LEU 1800.0038
ASP 1810.0038
LEU 1820.0041
SER 1830.0042
SER 1840.0043
ASN 1850.0041
LYS 1860.0040
ILE 1870.0045
GLN 1880.0040
SER 1890.0031
ILE 1900.0026
TYR 1910.0017
CYS 1920.0022
THR 1930.0025
ASP 1940.0033
LEU 1950.0037
ARG 1960.0038
VAL 1970.0043
LEU 1980.0043
HIS 1990.0040
GLN 2000.0045
MET 2010.0048
PRO 2020.0042
LEU 2030.0045
LEU 2040.0046
ASN 2050.0046
LEU 2060.0045
SER 2070.0044
LEU 2080.0039
ASP 2090.0043
LEU 2100.0039
SER 2110.0048
LEU 2120.0048
ASN 2130.0045
PRO 2140.0043
MET 2150.0034
ASN 2160.0030
PHE 2170.0024
ILE 2180.0013
GLN 2190.0005
PRO 2200.0010
GLY 2210.0018
ALA 2220.0017
PHE 2230.0025
LYS 2240.0032
GLU 2250.0045
ILE 2260.0043
ARG 2270.0034
LEU 2280.0036
HIS 2290.0044
LYS 2300.0041
LEU 2310.0034
THR 2320.0036
LEU 2330.0034
ARG 2340.0043
ASN 2350.0047
ASN 2360.0041
PHE 2370.0052
ASP 2380.0068
SER 2390.0058
LEU 2400.0041
ASN 2410.0051
VAL 2420.0045
MET 2430.0029
LYS 2440.0027
THR 2450.0033
CYS 2460.0021
ILE 2470.0008
GLN 2480.0020
GLY 2490.0011
LEU 2500.0010
ALA 2510.0025
GLY 2520.0028
LEU 2530.0028
GLU 2540.0033
VAL 2550.0032
HIS 2560.0036
ARG 2570.0030
LEU 2580.0021
VAL 2590.0024
LEU 2600.0021
GLY 2610.0031
GLU 2620.0048
PHE 2630.0060
ARG 2640.0070
ASN 2650.0077
GLU 2660.0069
GLY 2670.0074
ASN 2680.0057
LEU 2690.0044
GLU 2700.0047
LYS 2710.0035
PHE 2720.0021
ASP 2730.0019
LYS 2740.0022
SER 2750.0029
ALA 2760.0021
LEU 2770.0016
GLU 2780.0030
GLY 2790.0029
LEU 2800.0025
CYS 2810.0039
ASN 2820.0031
LEU 2830.0030
THR 2840.0035
ILE 2850.0031
GLU 2860.0036
GLU 2870.0029
PHE 2880.0023
ARG 2890.0022
LEU 2900.0022
ALA 2910.0028
TYR 2920.0046
LEU 2930.0038
ASP 2940.0040
TYR 2950.0033
TYR 2960.0033
LEU 2970.0037
ASP 2980.0040
GLY 2990.0035
ILE 3000.0029
ILE 3010.0030
ASP 3020.0029
LEU 3030.0021
PHE 3040.0026
ASN 3050.0034
CYS 3060.0032
LEU 3070.0030
THR 3080.0035
ASN 3090.0040
VAL 3100.0036
SER 3110.0040
SER 3120.0030
PHE 3130.0027
SER 3140.0025
LEU 3150.0027
VAL 3160.0031
SER 3170.0044
VAL 3180.0041
THR 3190.0044
ILE 3200.0042
GLU 3210.0045
ARG 3220.0044
VAL 3230.0037
LYS 3240.0041
ASP 3250.0033
PHE 3260.0033
SER 3270.0045
TYR 3280.0043
ASN 3290.0044
PHE 3300.0039
GLY 3310.0041
TRP 3320.0034
GLN 3330.0036
HIS 3340.0030
LEU 3350.0027
GLU 3360.0024
LEU 3370.0030
VAL 3380.0031
ASN 3390.0035
CYS 3400.0037
LYS 3410.0041
PHE 3420.0039
GLY 3430.0043
GLN 3440.0036
PHE 3450.0030
PRO 3460.0028
THR 3470.0045
LEU 3480.0041
LYS 3490.0046
LEU 3500.0044
LYS 3510.0050
SER 3520.0040
LEU 3530.0036
LYS 3540.0034
ARG 3550.0030
LEU 3560.0029
THR 3570.0023
PHE 3580.0019
THR 3590.0021
SER 3600.0025
ASN 3610.0028
LYS 3620.0036
GLY 3630.0043
GLY 3640.0046
ASN 3650.0035
ALA 3660.0032
PHE 3670.0042
SER 3680.0048
GLU 3690.0050
VAL 3700.0044
ASP 3710.0049
LEU 3720.0048
PRO 3730.0046
SER 3740.0040
LEU 3750.0033
GLU 3760.0024
PHE 3770.0027
LEU 3780.0025
ASP 3790.0021
LEU 3800.0021
SER 3810.0019
ARG 3820.0011
ASN 3830.0011
GLY 3840.0009
LEU 3850.0012
SER 3860.0017
PHE 3870.0042
LYS 3880.0053
GLY 3890.0061
CYS 3900.0055
CYS 3910.0055
SER 3920.0061
GLN 3930.0056
SER 3940.0068
ASP 3950.0059
PHE 3960.0048
GLY 3970.0058
THR 3980.0034
ILE 3990.0017
SER 4000.0012
LEU 4010.0023
LYS 4020.0011
TYR 4030.0012
LEU 4040.0019
ASP 4050.0020
LEU 4060.0027
SER 4070.0017
PHE 4080.0006
ASN 4090.0010
GLY 4100.0011
VAL 4110.0024
ILE 4120.0041
THR 4130.0054
MET 4140.0062
SER 4150.0073
SER 4160.0075
ASN 4170.0070
PHE 4180.0058
LEU 4190.0066
GLY 4200.0057
LEU 4210.0043
GLU 4220.0043
GLN 4230.0030
LEU 4240.0030
GLU 4250.0030
HIS 4260.0027
LEU 4270.0032
ASP 4280.0025
PHE 4290.0024
GLN 4300.0020
HIS 4310.0016
SER 4320.0018
ASN 4330.0026
LEU 4340.0040
LYS 4350.0050
GLN 4360.0066
MET 4370.0062
SER 4380.0070
GLU 4390.0074
PHE 4400.0078
SER 4410.0076
VAL 4420.0067
PHE 4430.0065
LEU 4440.0075
SER 4450.0070
LEU 4460.0063
ARG 4470.0072
ASN 4480.0065
LEU 4490.0059
ILE 4500.0062
TYR 4510.0055
LEU 4520.0047
ASP 4530.0040
ILE 4540.0036
SER 4550.0036
HIS 4560.0029
THR 4570.0036
HIS 4580.0036
THR 4590.0042
ARG 4600.0046
VAL 4610.0053
ALA 4620.0055
PHE 4630.0061
ASN 4640.0069
GLY 4650.0072
ILE 4660.0069
PHE 4670.0067
ASN 4680.0074
GLY 4690.0074
LEU 4700.0073
SER 4710.0082
SER 4720.0079
LEU 4730.0071
GLU 4740.0075
VAL 4750.0067
LEU 4760.0059
LYS 4770.0051
MET 4780.0044
ALA 4790.0046
GLY 4800.0040
ASN 4810.0034
SER 4820.0047
PHE 4830.0046
GLN 4840.0044
GLU 4850.0045
ASN 4860.0048
PHE 4870.0040
LEU 4880.0047
PRO 4890.0042
ASP 4900.0050
ILE 4910.0055
PHE 4920.0055
THR 4930.0058
GLU 4940.0062
LEU 4950.0065
ARG 4960.0071
ASN 4970.0071
LEU 4980.0064
THR 4990.0071
PHE 5000.0064
LEU 5010.0054
ASP 5020.0046
LEU 5030.0041
SER 5040.0044
GLN 5050.0041
CYS 5060.0035
GLN 5070.0041
LEU 5080.0040
GLU 5090.0039
GLN 5100.0038
LEU 5110.0038
SER 5120.0029
PRO 5130.0027
THR 5140.0028
ALA 5150.0032
PHE 5160.0034
ASN 5170.0032
SER 5180.0040
LEU 5190.0046
SER 5200.0043
SER 5210.0054
LEU 5220.0042
GLN 5230.0047
VAL 5240.0043
LEU 5250.0036
ASN 5260.0034
MET 5270.0033
SER 5280.0037
HIS 5290.0037
ASN 5300.0032
ASN 5310.0031
PHE 5320.0016
PHE 5330.0015
SER 5340.0019
LEU 5350.0022
ASP 5360.0028
THR 5370.0015
PHE 5380.0014
PRO 5390.0009
TYR 5400.0008
LYS 5410.0010
CYS 5420.0011
LEU 5430.0017
ASN 5440.0020
SER 5450.0025
LEU 5460.0024
GLN 5470.0017
VAL 5480.0015
LEU 5490.0014
ASP 5500.0016
TYR 5510.0019
SER 5520.0026
LEU 5530.0021
ASN 5540.0020
HIS 5550.0015
ILE 5560.0021
MET 5570.0032
THR 5580.0036
SER 5590.0041
LYS 5600.0040
LYS 5610.0045
GLN 5620.0047
GLU 5630.0041
LEU 5640.0038
GLN 5650.0041
HIS 5660.0034
PHE 5670.0015
PRO 5680.0009
SER 5690.0013
SER 5700.0013
LEU 5710.0011
ALA 5720.0015
PHE 5730.0019
LEU 5740.0022
ASN 5750.0026
LEU 5760.0028
THR 5770.0038
GLN 5780.0028
ASN 5790.0033
ASP 5800.0033
PHE 5810.0044
ALA 5820.0052
CYS 5830.0053
THR 5840.0051
CYS 5850.0051
GLU 5860.0050
HIS 5870.0047
GLN 5880.0052
SER 5890.0053
PHE 5900.0053
LEU 5910.0054
GLN 5920.0052
TRP 5930.0053
ILE 5940.0055
LYS 5950.0058
ASP 5960.0059
GLN 5970.0048
ARG 5980.0043
GLN 5990.0044
LEU 6000.0041
LEU 6010.0036
VAL 6020.0054
GLU 6030.0056
VAL 6040.0053
GLU 6050.0056
ARG 6060.0053
MET 6070.0059
GLU 6080.0062
CYS 6090.0062
ALA 6100.0068
THR 6110.0068
PRO 6120.0079
SER 6130.0099
ASP 6140.0096
LYS 6150.0083
GLN 6160.0096
GLY 6170.0081
MET 6180.0075
PRO 6190.0072
VAL 6200.0068
LEU 6210.0064
SER 6220.0076
LEU 6230.0071
ASN 6240.0070
ILE 6250.0067
THR 6260.0065
CYS 6270.0067
GLU 10.0358
ALA 20.0432
ALA 30.0365
ALA 40.0183
LYS 50.0228
MET 60.0165
GLN 70.0279
ARG 80.0329
LEU 90.0215
VAL 100.0217
LEU 110.0105
LEU 120.0167
LEU 130.0060
ALA 140.0141
ILE 150.0235
SER 160.0264
LEU 170.0175
LEU 180.0487
LEU 190.0508
TYR 200.0239
GLN 210.0308
ASP 220.0444
LEU 230.0277
PRO 240.0118
VAL 250.0141
ARG 260.0062
SER 270.0042
GLU 280.0036
PHE 290.0028
GLU 300.0029
LEU 310.0043
ASP 320.0047
ARG 330.0044
ILE 340.0041
CYS 350.0043
GLY 360.0027
TYR 370.0027
GLY 380.0029
THR 390.0026
ALA 400.0030
ARG 410.0048
CYS 420.0064
ARG 430.0080
LYS 440.0101
LYS 450.0101
CYS 460.0073
ARG 470.0063
SER 480.0063
GLN 490.0054
GLU 500.0058
TYR 510.0064
ARG 520.0065
ILE 530.0061
GLY 540.0062
ARG 550.0063
CYS 560.0065
PRO 570.0074
ASN 580.0093
THR 590.0080
TYR 600.0088
ALA 610.0068
CYS 620.0055
CYS 630.0053
LEU 640.0047
ARG 650.0046
LYS 660.0049
TRP 670.0039
ASP 680.0029
GLU 690.0024
SER 700.0015
LEU 710.0032
LEU 720.0024
ASN 730.0015
ARG 740.0027
THR 750.0030
LYS 760.0022
PRO 770.0036
GLU 780.0048
ALA 790.0055
ALA 800.0054
ALA 810.0118
LYS 820.0125
LYS 830.0118
GLU 840.0127
MET 850.0166
ASN 860.0178
LEU 870.0177
SER 880.0174
VAL 890.0176
GLY 900.0179
LEU 910.0142
GLY 920.0245
GLY 930.0354
GLY 940.0384
SER 950.0197
ASN 960.0104
LEU 970.0106
SER 980.0118
VAL 990.0178
GLY 1000.0185
LEU 1010.0284
GLY 1020.0208
GLU 1030.0118
ILE 1040.0198
GLY 1050.0247
GLY 1060.0280
GLY 1070.0176
SER 1080.0118
LYS 1090.0199
LEU 1100.0290
LEU 1110.0230
ASP 1120.0219
ILE 1130.0228
ASN 1140.0214
LEU 1150.0201
GLY 1160.0322
ARG 1170.0290
GLY 1180.0356
GLY 1190.0357
GLY 1200.0325
SER 1210.0212
MET 1220.0127
VAL 1230.0092
ASP 1240.0039
LEU 1250.0037
THR 1260.0073
PHE 1270.0040
GLY 1280.0054
GLY 1290.0039
VAL 1300.0034
GLY 1310.0347
GLY 1320.0285
GLY 1330.0246
SER 1340.0191
THR 1350.0166
PHE 1360.0109
THR 1370.0081
PHE 1380.0090
PHE 1390.0091
PRO 1400.0107
LEU 1410.0141
VAL 1420.0254
ILE 1430.0274
GLY 1440.0538
GLY 1450.0619
GLY 1460.0397
SER 1470.0481
ASP 1480.0514
ALA 1490.0447
MET 1500.0312
TYR 1510.0355
LEU 1520.0268
GLY 1530.0214
PHE 1540.0133
ALA 1550.0119
ALA 1560.0103
GLY 1570.0091
GLY 1580.0113
GLY 1590.0213
SER 1600.0298
ALA 1610.0267
GLY 1620.0201
GLY 1630.0109
GLU 1640.0090
ASN 1650.0070
HIS 1660.0115
VAL 1670.0133
ALA 1680.0133
PHE 1690.0142
GLY 1700.0155
PRO 1710.0184
GLY 1720.0175
PRO 1730.0130
GLY 1740.0027
VAL 1750.0135
ASP 1760.0161
LEU 1770.0125
THR 1780.0133
PHE 1790.0099
GLY 1800.0124
GLY 1810.0245
VAL 1820.0188
GLN 1830.0165
PHE 1840.0074
ALA 1850.0081
MET 1860.0022
VAL 1870.0018
ASN 1880.0009
ASN 1890.0021
GLY 1900.0028
PRO 1910.0044
GLY 1920.0051
PRO 1930.0050
GLY 1940.0037
GLU 1950.0033
SER 1960.0037
PHE 1970.0023
THR 1980.0014
ALA 1990.0019
GLN 2000.0025
PRO 2010.0017
ALA 2020.0011
ASP 2030.0019
MET 2040.0015
GLN 2050.0029
ALA 2060.0032
GLY 2070.0028
ILE 2080.0015
LYS 2090.0021
GLY 2100.0058
PRO 2110.0037
GLY 2120.0081
PRO 2130.0122
GLY 2140.0127
GLY 2150.0173
SER 2160.0099
ILE 2170.0127
GLN 2180.0131
VAL 2190.0190
ILE 2200.0196
ASN 2210.0296
GLY 2220.0271
SER 2230.0215
THR 2240.0300
ILE 2250.0404
GLY 2260.0464
THR 2270.0500
GLY 2280.0366
SER 2290.0369
LYS 2300.0233
LYS 2310.0341
THR 2320.0398
ILE 2330.0254
LEU 2340.0240
ILE 2350.0226
TYR 2360.0134
SER 2370.0125
ILE 2380.0154
ILE 2390.0173
GLY 2400.0196
VAL 2410.0145
LYS 2420.0113
LYS 2430.0105
GLY 2440.0106
THR 2450.0113
LEU 2460.0211
ALA 2470.0204
TRP 2480.0165
ALA 2490.0151
ARG 2500.0132
THR 2510.0214
GLY 2520.0271
PHE 2530.0178
SER 2540.0225
PRO 2550.0180
ALA 2560.0415
LYS 2570.0258
LYS 2580.0113
LEU 2590.0243
ASN 2600.0508
ALA 2610.0437
GLY 2620.0358
VAL 2630.0362
VAL 2640.0362
ARG 2650.0336
VAL 2660.0174
PHE 2670.0125
PHE 2680.0136
LEU 2690.0130
ASN 2700.0239
GLN 2710.0142
LYS 2720.0123
LYS 2730.0144
ALA 2740.0125
LYS 2750.0090
ASP 2760.0151
VAL 2770.0132
LEU 2780.0127
ARG 2790.0150
LYS 2800.0163
THR 2810.0167
SER 2820.0308
ARG 2830.0171
PRO 2840.0240
MET 2850.0271
VAL 2860.0191
ASP 2870.0179
LEU 2880.0166
THR 2890.0134
PHE 2900.0057
GLY 2910.0166
GLY 2920.0316

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.