CNRS Nantes University US2B US2B
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***  TLR_3_simulation  ***

<R2> analysis for 2608260340483950756

---  normal mode 104  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.1079
THR 260.0103
LYS 270.0102
CYS 280.0086
THR 290.0054
VAL 300.0051
SER 310.0032
HIS 320.0043
GLU 330.0080
VAL 340.0079
ALA 350.0070
ASP 360.0057
CYS 370.0073
SER 380.0076
HIS 390.0086
LEU 400.0095
LYS 410.0078
LEU 420.0074
THR 430.0055
GLN 440.0064
VAL 450.0082
PRO 460.0099
ASP 470.0115
ASP 480.0123
LEU 490.0125
PRO 500.0143
THR 510.0143
ASN 520.0147
ILE 530.0126
THR 540.0132
VAL 550.0113
LEU 560.0077
ASN 570.0072
LEU 580.0071
THR 590.0067
HIS 600.0064
ASN 610.0070
GLN 620.0051
LEU 630.0050
ARG 640.0042
ARG 650.0042
LEU 660.0057
PRO 670.0046
ALA 680.0059
ALA 690.0064
ASN 700.0079
PHE 710.0088
THR 720.0097
ARG 730.0114
TYR 740.0116
SER 750.0121
GLN 760.0115
LEU 770.0094
THR 780.0107
SER 790.0091
LEU 800.0063
ASP 810.0056
VAL 820.0049
GLY 830.0056
PHE 840.0058
ASN 850.0051
THR 860.0069
ILE 870.0072
SER 880.0077
LYS 890.0077
LEU 900.0081
GLU 910.0075
PRO 920.0081
GLU 930.0070
LEU 940.0077
CYS 950.0089
GLN 960.0071
LYS 970.0071
LEU 980.0079
PRO 990.0082
MET 1000.0091
LEU 1010.0069
LYS 1020.0077
VAL 1030.0076
LEU 1040.0071
ASN 1050.0072
LEU 1060.0072
GLN 1070.0073
HIS 1080.0078
ASN 1090.0079
GLU 1100.0078
LEU 1110.0084
SER 1120.0072
GLN 1130.0077
LEU 1140.0074
SER 1150.0083
ASP 1160.0081
LYS 1170.0096
THR 1180.0092
PHE 1190.0082
ALA 1200.0087
PHE 1210.0087
CYS 1220.0081
THR 1230.0074
ASN 1240.0075
LEU 1250.0072
THR 1260.0052
GLU 1270.0056
LEU 1280.0055
HIS 1290.0059
LEU 1300.0056
MET 1310.0060
SER 1320.0060
ASN 1330.0060
SER 1340.0051
ILE 1350.0044
GLN 1360.0025
LYS 1370.0030
ILE 1380.0024
LYS 1390.0053
ASN 1400.0055
ASN 1410.0030
PRO 1420.0036
PHE 1430.0028
VAL 1440.0020
LYS 1450.0041
GLN 1460.0027
LYS 1470.0024
ASN 1480.0049
LEU 1490.0041
ILE 1500.0056
THR 1510.0045
LEU 1520.0033
ASP 1530.0040
LEU 1540.0030
SER 1550.0043
HIS 1560.0055
ASN 1570.0044
GLY 1580.0035
LEU 1590.0040
SER 1600.0044
SER 1610.0084
THR 1620.0087
LYS 1630.0072
LEU 1640.0062
GLY 1650.0050
THR 1660.0061
GLN 1670.0061
VAL 1680.0072
GLN 1690.0060
LEU 1700.0065
GLU 1710.0084
ASN 1720.0086
LEU 1730.0076
GLN 1740.0088
GLU 1750.0074
LEU 1760.0074
LEU 1770.0076
LEU 1780.0075
SER 1790.0079
ASN 1800.0078
ASN 1810.0084
LYS 1820.0083
ILE 1830.0082
GLN 1840.0078
ALA 1850.0083
LEU 1860.0097
LYS 1870.0109
SER 1880.0107
GLU 1890.0127
GLU 1900.0124
LEU 1910.0102
ASP 1920.0106
ILE 1930.0108
PHE 1940.0105
ALA 1950.0107
ASN 1960.0115
SER 1970.0107
SER 1980.0101
LEU 1990.0093
LYS 2000.0088
LYS 2010.0081
LEU 2020.0083
GLU 2030.0083
LEU 2040.0083
SER 2050.0078
SER 2060.0082
ASN 2070.0087
GLN 2080.0084
ILE 2090.0083
LYS 2100.0087
GLU 2110.0105
PHE 2120.0096
SER 2130.0120
PRO 2140.0118
GLY 2150.0107
CYS 2160.0111
PHE 2170.0080
HIS 2180.0085
ALA 2190.0113
ILE 2200.0100
GLY 2210.0105
ARG 2220.0083
LEU 2230.0071
PHE 2240.0057
GLY 2250.0055
LEU 2260.0047
PHE 2270.0053
LEU 2280.0049
ASN 2290.0051
ASN 2300.0054
VAL 2310.0052
GLN 2320.0046
LEU 2330.0044
GLY 2340.0045
PRO 2350.0062
SER 2360.0091
LEU 2370.0074
THR 2380.0053
GLU 2390.0083
LYS 2400.0087
LEU 2410.0067
CYS 2420.0067
LEU 2430.0096
GLU 2440.0080
LEU 2450.0044
ALA 2460.0085
ASN 2470.0076
THR 2480.0044
SER 2490.0023
ILE 2500.0024
ARG 2510.0065
ASN 2520.0062
LEU 2530.0044
SER 2540.0044
LEU 2550.0031
SER 2560.0044
ASN 2570.0034
SER 2580.0018
GLN 2590.0018
LEU 2600.0035
SER 2610.0036
THR 2620.0049
THR 2630.0062
SER 2640.0073
ASN 2650.0088
THR 2660.0110
THR 2670.0082
PHE 2680.0091
LEU 2690.0116
GLY 2700.0108
LEU 2710.0101
LYS 2720.0149
TRP 2730.0136
THR 2740.0103
ASN 2750.0120
LEU 2760.0104
THR 2770.0116
MET 2780.0103
LEU 2790.0090
ASP 2800.0079
LEU 2810.0062
SER 2820.0060
TYR 2830.0050
ASN 2840.0044
ASN 2850.0039
LEU 2860.0048
ASN 2870.0044
VAL 2880.0048
VAL 2890.0058
GLY 2900.0060
ASN 2910.0060
ASP 2920.0076
SER 2930.0081
PHE 2940.0094
ALA 2950.0098
TRP 2960.0117
LEU 2970.0114
PRO 2980.0132
GLN 2990.0127
LEU 3000.0116
GLU 3010.0103
TYR 3020.0097
PHE 3030.0085
PHE 3040.0078
LEU 3050.0065
GLU 3060.0056
TYR 3070.0051
ASN 3080.0047
ASN 3090.0041
ILE 3100.0041
GLN 3110.0039
HIS 3120.0036
LEU 3130.0036
PHE 3140.0036
SER 3150.0035
HIS 3160.0043
SER 3170.0052
LEU 3180.0058
HIS 3190.0056
GLY 3200.0067
LEU 3210.0065
PHE 3220.0058
ASN 3230.0068
VAL 3240.0071
ARG 3250.0073
TYR 3260.0064
LEU 3270.0048
ASN 3280.0048
LEU 3290.0032
LYS 3300.0037
ARG 3310.0038
SER 3320.0036
PHE 3330.0034
THR 3340.0035
LYS 3350.0035
GLN 3360.0057
SER 3370.0084
ILE 3380.0121
SER 3390.0147
LEU 3400.0128
ALA 3410.0086
SER 3420.0075
LEU 3430.0059
PRO 3440.0049
LYS 3450.0068
ILE 3460.0032
ASP 3470.0041
ASP 3480.0055
PHE 3490.0050
SER 3500.0032
PHE 3510.0021
GLN 3520.0025
TRP 3530.0016
LEU 3540.0021
LYS 3550.0024
CYS 3560.0021
LEU 3570.0027
GLU 3580.0048
HIS 3590.0051
LEU 3600.0040
ASN 3610.0028
MET 3620.0024
GLU 3630.0029
ASP 3640.0024
ASN 3650.0017
ASP 3660.0024
ILE 3670.0037
PRO 3680.0042
GLY 3690.0058
ILE 3700.0071
LYS 3710.0065
SER 3720.0081
ASN 3730.0074
MET 3740.0060
PHE 3750.0066
THR 3760.0068
GLY 3770.0066
LEU 3780.0063
ILE 3790.0078
ASN 3800.0075
LEU 3810.0079
LYS 3820.0086
TYR 3830.0081
LEU 3840.0073
SER 3850.0068
LEU 3860.0070
SER 3870.0068
ASN 3880.0059
SER 3890.0057
PHE 3900.0054
THR 3910.0044
SER 3920.0049
LEU 3930.0062
ARG 3940.0064
THR 3950.0073
LEU 3960.0082
THR 3970.0075
ASN 3980.0075
GLU 3990.0080
THR 4000.0088
PHE 4010.0087
VAL 4020.0088
SER 4030.0093
LEU 4040.0099
ALA 4050.0101
HIS 4060.0099
SER 4070.0098
PRO 4080.0105
LEU 4090.0100
HIS 4100.0105
ILE 4110.0093
LEU 4120.0084
ASN 4130.0085
LEU 4140.0075
THR 4150.0080
LYS 4160.0084
ASN 4170.0079
LYS 4180.0075
ILE 4190.0073
SER 4200.0070
LYS 4210.0083
ILE 4220.0083
GLU 4230.0073
SER 4240.0070
ASP 4250.0073
ALA 4260.0077
PHE 4270.0084
SER 4280.0077
TRP 4290.0085
LEU 4300.0093
GLY 4310.0067
HIS 4320.0076
LEU 4330.0076
GLU 4340.0082
VAL 4350.0085
LEU 4360.0072
ASP 4370.0079
LEU 4380.0073
GLY 4390.0084
LEU 4400.0091
ASN 4410.0100
GLU 4420.0100
ILE 4430.0093
GLY 4440.0093
GLN 4450.0086
GLU 4460.0103
LEU 4470.0092
THR 4480.0081
GLY 4490.0073
GLN 4500.0070
GLU 4510.0076
TRP 4520.0073
ARG 4530.0062
GLY 4540.0063
LEU 4550.0070
GLU 4560.0054
ASN 4570.0055
ILE 4580.0057
PHE 4590.0058
GLU 4600.0063
ILE 4610.0066
TYR 4620.0068
LEU 4630.0070
SER 4640.0070
TYR 4650.0074
ASN 4660.0100
LYS 4670.0110
TYR 4680.0103
LEU 4690.0089
GLN 4700.0086
LEU 4710.0090
THR 4720.0091
ARG 4730.0079
ASN 4740.0078
SER 4750.0081
PHE 4760.0068
ALA 4770.0062
LEU 4780.0061
VAL 4790.0060
PRO 4800.0056
SER 4810.0056
LEU 4820.0055
GLN 4830.0051
ARG 4840.0052
LEU 4850.0054
MET 4860.0047
LEU 4870.0047
ARG 4880.0039
ARG 4890.0046
VAL 4900.0063
ALA 4910.0074
LEU 4920.0066
LYS 4930.0076
ASN 4940.0074
VAL 4950.0056
ASP 4960.0063
SER 4970.0081
SER 4980.0087
PRO 4990.0078
SER 5000.0063
PRO 5010.0067
PHE 5020.0054
GLN 5030.0053
PRO 5040.0057
LEU 5050.0049
ARG 5060.0042
ASN 5070.0041
LEU 5080.0040
THR 5090.0039
ILE 5100.0041
LEU 5110.0026
ASP 5120.0030
LEU 5130.0018
SER 5140.0029
ASN 5150.0031
ASN 5160.0042
ASN 5170.0043
ILE 5180.0038
ALA 5190.0037
ASN 5200.0032
ILE 5210.0047
ASN 5220.0037
ASP 5230.0041
ASP 5240.0039
MET 5250.0040
LEU 5260.0040
GLU 5270.0041
GLY 5280.0045
LEU 5290.0042
GLU 5300.0039
LYS 5310.0031
LEU 5320.0036
GLU 5330.0053
ILE 5340.0061
LEU 5350.0055
ASP 5360.0060
LEU 5370.0063
GLN 5380.0073
HIS 5390.0081
ASN 5400.0077
ASN 5410.0122
LEU 5420.0112
ALA 5430.0112
ARG 5440.0120
LEU 5450.0111
TRP 5460.0119
LYS 5470.0140
HIS 5480.0161
ALA 5490.0196
ASN 5500.0201
PRO 5510.0296
GLY 5520.0272
GLY 5530.0204
PRO 5540.0124
ILE 5550.0106
TYR 5560.0075
PHE 5570.0079
LEU 5580.0064
LYS 5590.0055
GLY 5600.0051
LEU 5610.0060
SER 5620.0061
HIS 5630.0061
LEU 5640.0063
HIS 5650.0066
ILE 5660.0068
LEU 5670.0070
ASN 5680.0074
LEU 5690.0076
GLU 5700.0077
SER 5710.0089
ASN 5720.0096
GLY 5730.0092
PHE 5740.0083
ASP 5750.0083
GLU 5760.0093
ILE 5770.0081
PRO 5780.0089
VAL 5790.0076
GLU 5800.0074
VAL 5810.0072
PHE 5820.0060
LYS 5830.0056
ASP 5840.0056
LEU 5850.0056
PHE 5860.0059
GLU 5870.0062
LEU 5880.0059
LYS 5890.0054
ILE 5900.0053
ILE 5910.0049
ASP 5920.0050
LEU 5930.0048
GLY 5940.0040
LEU 5950.0043
ASN 5960.0042
ASN 5970.0038
LEU 5980.0037
ASN 5990.0043
THR 6000.0064
LEU 6010.0058
PRO 6020.0073
ALA 6030.0069
SER 6040.0052
VAL 6050.0050
PHE 6060.0033
ASN 6070.0036
ASN 6080.0041
GLN 6090.0033
VAL 6100.0028
SER 6110.0038
LEU 6120.0025
LYS 6130.0029
SER 6140.0021
LEU 6150.0005
ASN 6160.0012
LEU 6170.0009
GLN 6180.0019
LYS 6190.0025
ASN 6200.0023
LEU 6210.0043
ILE 6220.0044
THR 6230.0050
SER 6240.0050
VAL 6250.0050
GLU 6260.0052
LYS 6270.0058
LYS 6280.0059
VAL 6290.0041
PHE 6300.0035
GLY 6310.0042
PRO 6320.0030
ALA 6330.0023
PHE 6340.0034
ARG 6350.0035
ASN 6360.0026
LEU 6370.0029
THR 6380.0038
GLU 6390.0035
LEU 6400.0034
ASP 6410.0040
MET 6420.0042
ARG 6430.0054
PHE 6440.0063
ASN 6450.0058
PRO 6460.0085
PHE 6470.0060
ASP 6480.0059
CYS 6490.0038
THR 6500.0058
CYS 6510.0099
GLU 6520.0126
SER 6530.0098
ILE 6540.0051
ALA 6550.0061
TRP 6560.0043
PHE 6570.0035
VAL 6580.0016
ASN 6590.0029
TRP 6600.0049
ILE 6610.0044
ASN 6620.0049
GLU 6630.0084
THR 6640.0120
HIS 6650.0168
THR 6660.0055
ASN 6670.0051
ILE 6680.0050
PRO 6690.0047
GLU 6700.0057
LEU 6710.0057
SER 6720.0061
SER 6730.0069
HIS 6740.0066
TYR 6750.0057
LEU 6760.0075
CYS 6770.0055
ASN 6780.0086
THR 6790.0095
PRO 6800.0081
PRO 6810.0083
HIS 6820.0048
TYR 6830.0027
HIS 6840.0063
GLY 6850.0082
PHE 6860.0042
PRO 6870.0054
VAL 6880.0034
ARG 6890.0045
LEU 6900.0050
PHE 6910.0093
ASP 6920.0162
THR 6930.0164
SER 6940.0278
SER 6950.0301
CYS 6960.0277
GLU 10.0141
ALA 20.0144
ALA 30.0076
ALA 40.0026
LYS 50.0067
MET 60.0082
GLN 70.0068
ARG 80.0030
LEU 90.0055
VAL 100.0094
LEU 110.0051
LEU 120.0034
LEU 130.0037
ALA 140.0052
ILE 150.0051
SER 160.0043
LEU 170.0041
LEU 180.0050
LEU 190.0048
TYR 200.0035
GLN 210.0030
ASP 220.0043
LEU 230.0078
PRO 240.0091
VAL 250.0099
ARG 260.0097
SER 270.0119
GLU 280.0012
PHE 290.0088
GLU 300.0098
LEU 310.0057
ASP 320.0031
ARG 330.0021
ILE 340.0037
CYS 350.0041
GLY 360.0141
TYR 370.0207
GLY 380.0154
THR 390.0094
ALA 400.0055
ARG 410.0035
CYS 420.0039
ARG 430.0042
LYS 440.0059
LYS 450.0059
CYS 460.0094
ARG 470.0131
SER 480.0178
GLN 490.0149
GLU 500.0108
TYR 510.0110
ARG 520.0077
ILE 530.0090
GLY 540.0072
ARG 550.0064
CYS 560.0046
PRO 570.0072
ASN 580.0071
THR 590.0056
TYR 600.0041
ALA 610.0067
CYS 620.0060
CYS 630.0063
LEU 640.0067
ARG 650.0069
LYS 660.0197
TRP 670.0161
ASP 680.0124
GLU 690.0143
SER 700.0205
LEU 710.0205
LEU 720.0180
ASN 730.0196
ARG 740.0241
THR 750.0227
LYS 760.0235
PRO 770.0199
GLU 780.0190
ALA 790.0186
ALA 800.0219
ALA 810.0198
LYS 820.0157
LYS 830.0120
GLU 840.0072
MET 850.0040
ASN 860.0039
LEU 870.0051
SER 880.0057
VAL 890.0064
GLY 900.0076
LEU 910.0096
GLY 920.0145
GLY 930.0157
GLY 940.0145
SER 950.0094
ASN 960.0070
LEU 970.0031
SER 980.0029
VAL 990.0042
GLY 1000.0052
LEU 1010.0098
GLY 1020.0093
GLU 1030.0089
ILE 1040.0099
GLY 1050.0121
GLY 1060.0378
GLY 1070.0221
SER 1080.0131
LYS 1090.0116
LEU 1100.0243
LEU 1110.0156
ASP 1120.0160
ILE 1130.0111
ASN 1140.0125
LEU 1150.0089
GLY 1160.0092
ARG 1170.0152
GLY 1180.0058
GLY 1190.0065
GLY 1200.0151
SER 1210.0092
MET 1220.0065
VAL 1230.0073
ASP 1240.0053
LEU 1250.0055
THR 1260.0032
PHE 1270.0015
GLY 1280.0038
GLY 1290.0059
VAL 1300.0081
GLY 1310.0160
GLY 1320.0146
GLY 1330.0110
SER 1340.0094
THR 1350.0059
PHE 1360.0071
THR 1370.0082
PHE 1380.0076
PHE 1390.0090
PRO 1400.0089
LEU 1410.0154
VAL 1420.0182
ILE 1430.0159
GLY 1440.0183
GLY 1450.0247
GLY 1460.0254
SER 1470.0168
ASP 1480.0084
ALA 1490.0066
MET 1500.0079
TYR 1510.0081
LEU 1520.0077
GLY 1530.0082
PHE 1540.0080
ALA 1550.0086
ALA 1560.0111
GLY 1570.0090
GLY 1580.0090
GLY 1590.0060
SER 1600.0073
ALA 1610.0087
GLY 1620.0089
GLY 1630.0081
GLU 1640.0073
ASN 1650.0071
HIS 1660.0043
VAL 1670.0042
ALA 1680.0019
PHE 1690.0019
GLY 1700.0019
PRO 1710.0253
GLY 1720.0222
PRO 1730.0207
GLY 1740.0119
VAL 1750.0077
ASP 1760.0041
LEU 1770.0045
THR 1780.0079
PHE 1790.0119
GLY 1800.0164
GLY 1810.0212
VAL 1820.0163
GLN 1830.0083
PHE 1840.0102
ALA 1850.0124
MET 1860.0236
VAL 1870.0304
ASN 1880.0184
ASN 1890.0123
GLY 1900.0205
PRO 1910.0207
GLY 1920.0159
PRO 1930.0183
GLY 1940.0128
GLU 1950.0030
SER 1960.0119
PHE 1970.0085
THR 1980.0065
ALA 1990.0047
GLN 2000.0033
PRO 2010.0058
ALA 2020.0037
ASP 2030.0041
MET 2040.0062
GLN 2050.0084
ALA 2060.0085
GLY 2070.0059
ILE 2080.0060
LYS 2090.0052
GLY 2100.0052
PRO 2110.0050
GLY 2120.0037
PRO 2130.0109
GLY 2140.0229
GLY 2150.0243
SER 2160.0131
ILE 2170.0089
GLN 2180.0047
VAL 2190.0185
ILE 2200.0147
ASN 2210.0275
GLY 2220.0139
SER 2230.0165
THR 2240.0250
ILE 2250.0187
GLY 2260.0095
THR 2270.0187
GLY 2280.0191
SER 2290.0230
LYS 2300.0110
LYS 2310.0145
THR 2320.0177
ILE 2330.0204
LEU 2340.0186
ILE 2350.0292
TYR 2360.0040
SER 2370.0028
ILE 2380.0057
ILE 2390.0116
GLY 2400.0159
VAL 2410.0138
LYS 2420.0047
LYS 2430.0163
GLY 2440.0224
THR 2450.0113
LEU 2460.0112
ALA 2470.0114
TRP 2480.0136
ALA 2490.0165
ARG 2500.0197
THR 2510.0403
GLY 2520.0347
PHE 2530.0257
SER 2540.0214
PRO 2550.0141
ALA 2560.0119
LYS 2570.0150
LYS 2580.0083
LEU 2590.0178
ASN 2600.0265
ALA 2610.0336
GLY 2620.0235
VAL 2630.0191
VAL 2640.0315
ARG 2650.0072
VAL 2660.0188
PHE 2670.0182
PHE 2680.0303
LEU 2690.0257
ASN 2700.0353
GLN 2710.0248
LYS 2720.0100
LYS 2730.0138
ALA 2740.0109
LYS 2750.0155
ASP 2760.0217
VAL 2770.0230
LEU 2780.0153
ARG 2790.0093
LYS 2800.0274
THR 2810.0301
SER 2820.0286
ARG 2830.0254
PRO 2840.0280
MET 2850.0370
VAL 2860.0541
ASP 2870.0371
LEU 2880.0373
THR 2890.0329
PHE 2900.0283
GLY 2910.0582
GLY 2920.1079

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elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.