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***  TLR_3_simulation  ***

<R2> analysis for 2608260340483950756

---  normal mode 105  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0751
THR 260.0026
LYS 270.0022
CYS 280.0032
THR 290.0023
VAL 300.0018
SER 310.0011
HIS 320.0026
GLU 330.0058
VAL 340.0054
ALA 350.0035
ASP 360.0031
CYS 370.0031
SER 380.0037
HIS 390.0036
LEU 400.0028
LYS 410.0026
LEU 420.0020
THR 430.0016
GLN 440.0018
VAL 450.0038
PRO 460.0044
ASP 470.0061
ASP 480.0062
LEU 490.0064
PRO 500.0082
THR 510.0093
ASN 520.0101
ILE 530.0087
THR 540.0101
VAL 550.0091
LEU 560.0056
ASN 570.0054
LEU 580.0048
THR 590.0053
HIS 600.0050
ASN 610.0050
GLN 620.0044
LEU 630.0036
ARG 640.0039
ARG 650.0029
LEU 660.0047
PRO 670.0039
ALA 680.0049
ALA 690.0051
ASN 700.0053
PHE 710.0067
THR 720.0079
ARG 730.0083
TYR 740.0085
SER 750.0099
GLN 760.0099
LEU 770.0088
THR 780.0106
SER 790.0096
LEU 800.0077
ASP 810.0072
VAL 820.0061
GLY 830.0076
PHE 840.0083
ASN 850.0070
THR 860.0079
ILE 870.0072
SER 880.0078
LYS 890.0067
LEU 900.0063
GLU 910.0054
PRO 920.0050
GLU 930.0044
LEU 940.0055
CYS 950.0061
GLN 960.0059
LYS 970.0062
LEU 980.0071
PRO 990.0074
MET 1000.0085
LEU 1010.0065
LYS 1020.0080
VAL 1030.0083
LEU 1040.0073
ASN 1050.0083
LEU 1060.0079
GLN 1070.0094
HIS 1080.0107
ASN 1090.0100
GLU 1100.0098
LEU 1110.0103
SER 1120.0098
GLN 1130.0089
LEU 1140.0069
SER 1150.0068
ASP 1160.0059
LYS 1170.0063
THR 1180.0064
PHE 1190.0046
ALA 1200.0040
PHE 1210.0039
CYS 1220.0041
THR 1230.0035
ASN 1240.0045
LEU 1250.0051
THR 1260.0050
GLU 1270.0056
LEU 1280.0052
HIS 1290.0067
LEU 1300.0069
MET 1310.0086
SER 1320.0096
ASN 1330.0093
SER 1340.0092
ILE 1350.0074
GLN 1360.0068
LYS 1370.0061
ILE 1380.0050
LYS 1390.0068
ASN 1400.0067
ASN 1410.0048
PRO 1420.0044
PHE 1430.0025
VAL 1440.0028
LYS 1450.0023
GLN 1460.0014
LYS 1470.0012
ASN 1480.0015
LEU 1490.0009
ILE 1500.0016
THR 1510.0021
LEU 1520.0019
ASP 1530.0032
LEU 1540.0032
SER 1550.0045
HIS 1560.0061
ASN 1570.0048
GLY 1580.0035
LEU 1590.0020
SER 1600.0013
SER 1610.0039
THR 1620.0040
LYS 1630.0032
LEU 1640.0033
GLY 1650.0035
THR 1660.0057
GLN 1670.0053
VAL 1680.0049
GLN 1690.0036
LEU 1700.0028
GLU 1710.0038
ASN 1720.0033
LEU 1730.0030
GLN 1740.0035
GLU 1750.0028
LEU 1760.0033
LEU 1770.0042
LEU 1780.0040
SER 1790.0053
ASN 1800.0058
ASN 1810.0060
LYS 1820.0057
ILE 1830.0056
GLN 1840.0061
ALA 1850.0058
LEU 1860.0061
LYS 1870.0052
SER 1880.0037
GLU 1890.0037
GLU 1900.0047
LEU 1910.0039
ASP 1920.0032
ILE 1930.0037
PHE 1940.0036
ALA 1950.0029
ASN 1960.0039
SER 1970.0042
SER 1980.0043
LEU 1990.0046
LYS 2000.0049
LYS 2010.0055
LEU 2020.0054
GLU 2030.0066
LEU 2040.0069
SER 2050.0081
SER 2060.0104
ASN 2070.0095
GLN 2080.0102
ILE 2090.0088
LYS 2100.0095
GLU 2110.0091
PHE 2120.0070
SER 2130.0071
PRO 2140.0062
GLY 2150.0045
CYS 2160.0051
PHE 2170.0030
HIS 2180.0020
ALA 2190.0030
ILE 2200.0030
GLY 2210.0029
ARG 2220.0034
LEU 2230.0040
PHE 2240.0048
GLY 2250.0055
LEU 2260.0055
PHE 2270.0074
LEU 2280.0077
ASN 2290.0094
ASN 2300.0110
VAL 2310.0102
GLN 2320.0104
LEU 2330.0084
GLY 2340.0075
PRO 2350.0060
SER 2360.0080
LEU 2370.0077
THR 2380.0048
GLU 2390.0051
LYS 2400.0065
LEU 2410.0047
CYS 2420.0031
LEU 2430.0055
GLU 2440.0046
LEU 2450.0023
ALA 2460.0052
ASN 2470.0060
THR 2480.0039
SER 2490.0050
ILE 2500.0046
ARG 2510.0070
ASN 2520.0069
LEU 2530.0051
SER 2540.0064
LEU 2550.0057
SER 2560.0074
ASN 2570.0080
SER 2580.0067
GLN 2590.0066
LEU 2600.0044
SER 2610.0028
THR 2620.0020
THR 2630.0022
SER 2640.0032
ASN 2650.0043
THR 2660.0056
THR 2670.0031
PHE 2680.0037
LEU 2690.0062
GLY 2700.0058
LEU 2710.0055
LYS 2720.0092
TRP 2730.0090
THR 2740.0072
ASN 2750.0094
LEU 2760.0069
THR 2770.0083
MET 2780.0076
LEU 2790.0062
ASP 2800.0061
LEU 2810.0045
SER 2820.0057
TYR 2830.0057
ASN 2840.0041
ASN 2850.0041
LEU 2860.0028
ASN 2870.0035
VAL 2880.0036
VAL 2890.0036
GLY 2900.0040
ASN 2910.0047
ASP 2920.0052
SER 2930.0047
PHE 2940.0055
ALA 2950.0061
TRP 2960.0066
LEU 2970.0067
PRO 2980.0082
GLN 2990.0083
LEU 3000.0076
GLU 3010.0064
TYR 3020.0061
PHE 3030.0056
PHE 3040.0054
LEU 3050.0050
GLU 3060.0046
TYR 3070.0045
ASN 3080.0042
ASN 3090.0042
ILE 3100.0042
GLN 3110.0058
HIS 3120.0054
LEU 3130.0047
PHE 3140.0050
SER 3150.0049
HIS 3160.0051
SER 3170.0053
LEU 3180.0052
HIS 3190.0051
GLY 3200.0051
LEU 3210.0048
PHE 3220.0039
ASN 3230.0040
VAL 3240.0044
ARG 3250.0040
TYR 3260.0036
LEU 3270.0032
ASN 3280.0034
LEU 3290.0034
LYS 3300.0034
ARG 3310.0033
SER 3320.0034
PHE 3330.0039
THR 3340.0048
LYS 3350.0050
GLN 3360.0125
SER 3370.0164
ILE 3380.0241
SER 3390.0275
LEU 3400.0223
ALA 3410.0165
SER 3420.0133
LEU 3430.0105
PRO 3440.0070
LYS 3450.0088
ILE 3460.0039
ASP 3470.0042
ASP 3480.0039
PHE 3490.0039
SER 3500.0036
PHE 3510.0021
GLN 3520.0023
TRP 3530.0027
LEU 3540.0020
LYS 3550.0020
CYS 3560.0014
LEU 3570.0015
GLU 3580.0032
HIS 3590.0037
LEU 3600.0028
ASN 3610.0023
MET 3620.0019
GLU 3630.0027
ASP 3640.0030
ASN 3650.0026
ASP 3660.0030
ILE 3670.0015
PRO 3680.0014
GLY 3690.0019
ILE 3700.0032
LYS 3710.0018
SER 3720.0036
ASN 3730.0034
MET 3740.0021
PHE 3750.0034
THR 3760.0035
GLY 3770.0038
LEU 3780.0037
ILE 3790.0054
ASN 3800.0053
LEU 3810.0060
LYS 3820.0071
TYR 3830.0068
LEU 3840.0057
SER 3850.0056
LEU 3860.0053
SER 3870.0057
ASN 3880.0051
SER 3890.0044
PHE 3900.0040
THR 3910.0032
SER 3920.0047
LEU 3930.0059
ARG 3940.0074
THR 3950.0089
LEU 3960.0079
THR 3970.0079
ASN 3980.0076
GLU 3990.0081
THR 4000.0082
PHE 4010.0072
VAL 4020.0072
SER 4030.0070
LEU 4040.0073
ALA 4050.0076
HIS 4060.0074
SER 4070.0073
PRO 4080.0081
LEU 4090.0080
HIS 4100.0087
ILE 4110.0081
LEU 4120.0075
ASN 4130.0075
LEU 4140.0069
THR 4150.0071
LYS 4160.0067
ASN 4170.0072
LYS 4180.0075
ILE 4190.0074
SER 4200.0077
LYS 4210.0082
ILE 4220.0071
GLU 4230.0066
SER 4240.0055
ASP 4250.0057
ALA 4260.0070
PHE 4270.0069
SER 4280.0067
TRP 4290.0074
LEU 4300.0073
GLY 4310.0064
HIS 4320.0067
LEU 4330.0064
GLU 4340.0061
VAL 4350.0062
LEU 4360.0054
ASP 4370.0058
LEU 4380.0054
GLY 4390.0059
LEU 4400.0069
ASN 4410.0081
GLU 4420.0084
ILE 4430.0071
GLY 4440.0074
GLN 4450.0063
GLU 4460.0065
LEU 4470.0050
THR 4480.0034
GLY 4490.0023
GLN 4500.0015
GLU 4510.0038
TRP 4520.0031
ARG 4530.0029
GLY 4540.0042
LEU 4550.0037
GLU 4560.0035
ASN 4570.0036
ILE 4580.0024
PHE 4590.0017
GLU 4600.0027
ILE 4610.0023
TYR 4620.0032
LEU 4630.0037
SER 4640.0044
TYR 4650.0054
ASN 4660.0076
LYS 4670.0091
TYR 4680.0083
LEU 4690.0065
GLN 4700.0065
LEU 4710.0073
THR 4720.0069
ARG 4730.0067
ASN 4740.0051
SER 4750.0049
PHE 4760.0039
ALA 4770.0040
LEU 4780.0023
VAL 4790.0021
PRO 4800.0039
SER 4810.0036
LEU 4820.0032
GLN 4830.0033
ARG 4840.0034
LEU 4850.0043
MET 4860.0042
LEU 4870.0047
ARG 4880.0047
ARG 4890.0054
VAL 4900.0061
ALA 4910.0079
LEU 4920.0074
LYS 4930.0079
ASN 4940.0078
VAL 4950.0076
ASP 4960.0079
SER 4970.0080
SER 4980.0081
PRO 4990.0076
SER 5000.0073
PRO 5010.0065
PHE 5020.0065
GLN 5030.0067
PRO 5040.0062
LEU 5050.0062
ARG 5060.0064
ASN 5070.0067
LEU 5080.0064
THR 5090.0069
ILE 5100.0065
LEU 5110.0060
ASP 5120.0058
LEU 5130.0050
SER 5140.0052
ASN 5150.0050
ASN 5160.0048
ASN 5170.0039
ILE 5180.0030
ALA 5190.0017
ASN 5200.0013
ILE 5210.0039
ASN 5220.0035
ASP 5230.0030
ASP 5240.0046
MET 5250.0051
LEU 5260.0055
GLU 5270.0054
GLY 5280.0060
LEU 5290.0064
GLU 5300.0064
LYS 5310.0073
LEU 5320.0067
GLU 5330.0073
ILE 5340.0069
LEU 5350.0060
ASP 5360.0056
LEU 5370.0043
GLN 5380.0058
HIS 5390.0063
ASN 5400.0049
ASN 5410.0086
LEU 5420.0064
ALA 5430.0085
ARG 5440.0091
LEU 5450.0065
TRP 5460.0075
LYS 5470.0112
HIS 5480.0124
ALA 5490.0169
ASN 5500.0160
PRO 5510.0244
GLY 5520.0221
GLY 5530.0170
PRO 5540.0092
ILE 5550.0045
TYR 5560.0029
PHE 5570.0025
LEU 5580.0027
LYS 5590.0029
GLY 5600.0043
LEU 5610.0044
SER 5620.0045
HIS 5630.0055
LEU 5640.0055
HIS 5650.0062
ILE 5660.0060
LEU 5670.0047
ASN 5680.0050
LEU 5690.0046
GLU 5700.0061
SER 5710.0083
ASN 5720.0072
GLY 5730.0083
PHE 5740.0069
ASP 5750.0076
GLU 5760.0070
ILE 5770.0053
PRO 5780.0049
VAL 5790.0041
GLU 5800.0041
VAL 5810.0031
PHE 5820.0033
LYS 5830.0028
ASP 5840.0030
LEU 5850.0037
PHE 5860.0049
GLU 5870.0051
LEU 5880.0046
LYS 5890.0049
ILE 5900.0044
ILE 5910.0039
ASP 5920.0043
LEU 5930.0044
GLY 5940.0052
LEU 5950.0059
ASN 5960.0058
ASN 5970.0052
LEU 5980.0042
ASN 5990.0033
THR 6000.0034
LEU 6010.0031
PRO 6020.0033
ALA 6030.0034
SER 6040.0037
VAL 6050.0035
PHE 6060.0034
ASN 6070.0042
ASN 6080.0045
GLN 6090.0044
VAL 6100.0052
SER 6110.0051
LEU 6120.0041
LYS 6130.0035
SER 6140.0026
LEU 6150.0020
ASN 6160.0023
LEU 6170.0021
GLN 6180.0020
LYS 6190.0023
ASN 6200.0022
LEU 6210.0034
ILE 6220.0035
THR 6230.0034
SER 6240.0034
VAL 6250.0038
GLU 6260.0014
LYS 6270.0016
LYS 6280.0016
VAL 6290.0009
PHE 6300.0007
GLY 6310.0026
PRO 6320.0030
ALA 6330.0020
PHE 6340.0012
ARG 6350.0023
ASN 6360.0037
LEU 6370.0027
THR 6380.0025
GLU 6390.0020
LEU 6400.0015
ASP 6410.0015
MET 6420.0014
ARG 6430.0024
PHE 6440.0031
ASN 6450.0029
PRO 6460.0058
PHE 6470.0047
ASP 6480.0051
CYS 6490.0041
THR 6500.0051
CYS 6510.0089
GLU 6520.0114
SER 6530.0093
ILE 6540.0061
ALA 6550.0075
TRP 6560.0032
PHE 6570.0030
VAL 6580.0023
ASN 6590.0023
TRP 6600.0028
ILE 6610.0032
ASN 6620.0024
GLU 6630.0058
THR 6640.0099
HIS 6650.0142
THR 6660.0039
ASN 6670.0030
ILE 6680.0029
PRO 6690.0031
GLU 6700.0037
LEU 6710.0032
SER 6720.0037
SER 6730.0039
HIS 6740.0034
TYR 6750.0031
LEU 6760.0051
CYS 6770.0047
ASN 6780.0069
THR 6790.0074
PRO 6800.0064
PRO 6810.0071
HIS 6820.0045
TYR 6830.0041
HIS 6840.0067
GLY 6850.0077
PHE 6860.0037
PRO 6870.0036
VAL 6880.0026
ARG 6890.0025
LEU 6900.0031
PHE 6910.0067
ASP 6920.0139
THR 6930.0159
SER 6940.0258
SER 6950.0276
CYS 6960.0274
GLU 10.0259
ALA 20.0276
ALA 30.0188
ALA 40.0075
LYS 50.0123
MET 60.0127
GLN 70.0096
ARG 80.0047
LEU 90.0083
VAL 100.0131
LEU 110.0051
LEU 120.0047
LEU 130.0046
ALA 140.0046
ILE 150.0050
SER 160.0113
LEU 170.0142
LEU 180.0090
LEU 190.0062
TYR 200.0134
GLN 210.0162
ASP 220.0123
LEU 230.0122
PRO 240.0175
VAL 250.0099
ARG 260.0148
SER 270.0176
GLU 280.0078
PHE 290.0159
GLU 300.0156
LEU 310.0104
ASP 320.0076
ARG 330.0088
ILE 340.0077
CYS 350.0078
GLY 360.0116
TYR 370.0167
GLY 380.0147
THR 390.0101
ALA 400.0071
ARG 410.0072
CYS 420.0065
ARG 430.0061
LYS 440.0058
LYS 450.0049
CYS 460.0076
ARG 470.0086
SER 480.0105
GLN 490.0092
GLU 500.0074
TYR 510.0042
ARG 520.0042
ILE 530.0039
GLY 540.0039
ARG 550.0042
CYS 560.0036
PRO 570.0040
ASN 580.0048
THR 590.0038
TYR 600.0037
ALA 610.0058
CYS 620.0054
CYS 630.0056
LEU 640.0055
ARG 650.0059
LYS 660.0093
TRP 670.0094
ASP 680.0139
GLU 690.0184
SER 700.0235
LEU 710.0147
LEU 720.0113
ASN 730.0165
ARG 740.0165
THR 750.0111
LYS 760.0060
PRO 770.0068
GLU 780.0209
ALA 790.0269
ALA 800.0157
ALA 810.0410
LYS 820.0347
LYS 830.0335
GLU 840.0267
MET 850.0251
ASN 860.0145
LEU 870.0107
SER 880.0099
VAL 890.0080
GLY 900.0077
LEU 910.0107
GLY 920.0217
GLY 930.0203
GLY 940.0210
SER 950.0119
ASN 960.0138
LEU 970.0124
SER 980.0134
VAL 990.0110
GLY 1000.0139
LEU 1010.0150
GLY 1020.0158
GLU 1030.0217
ILE 1040.0239
GLY 1050.0316
GLY 1060.0200
GLY 1070.0157
SER 1080.0166
LYS 1090.0142
LEU 1100.0156
LEU 1110.0057
ASP 1120.0069
ILE 1130.0098
ASN 1140.0122
LEU 1150.0157
GLY 1160.0327
ARG 1170.0321
GLY 1180.0308
GLY 1190.0423
GLY 1200.0405
SER 1210.0129
MET 1220.0094
VAL 1230.0064
ASP 1240.0048
LEU 1250.0023
THR 1260.0055
PHE 1270.0075
GLY 1280.0126
GLY 1290.0153
VAL 1300.0182
GLY 1310.0163
GLY 1320.0164
GLY 1330.0153
SER 1340.0166
THR 1350.0160
PHE 1360.0127
THR 1370.0124
PHE 1380.0109
PHE 1390.0099
PRO 1400.0094
LEU 1410.0212
VAL 1420.0366
ILE 1430.0300
GLY 1440.0456
GLY 1450.0467
GLY 1460.0698
SER 1470.0580
ASP 1480.0486
ALA 1490.0288
MET 1500.0142
TYR 1510.0119
LEU 1520.0099
GLY 1530.0088
PHE 1540.0105
ALA 1550.0136
ALA 1560.0157
GLY 1570.0140
GLY 1580.0121
GLY 1590.0113
SER 1600.0106
ALA 1610.0125
GLY 1620.0111
GLY 1630.0098
GLU 1640.0078
ASN 1650.0057
HIS 1660.0075
VAL 1670.0073
ALA 1680.0078
PHE 1690.0077
GLY 1700.0085
PRO 1710.0113
GLY 1720.0132
PRO 1730.0124
GLY 1740.0122
VAL 1750.0100
ASP 1760.0112
LEU 1770.0094
THR 1780.0102
PHE 1790.0088
GLY 1800.0094
GLY 1810.0172
VAL 1820.0174
GLN 1830.0165
PHE 1840.0147
ALA 1850.0155
MET 1860.0098
VAL 1870.0120
ASN 1880.0145
ASN 1890.0142
GLY 1900.0174
PRO 1910.0048
GLY 1920.0129
PRO 1930.0181
GLY 1940.0086
GLU 1950.0108
SER 1960.0390
PHE 1970.0309
THR 1980.0251
ALA 1990.0206
GLN 2000.0111
PRO 2010.0139
ALA 2020.0064
ASP 2030.0097
MET 2040.0173
GLN 2050.0164
ALA 2060.0523
GLY 2070.0384
ILE 2080.0345
LYS 2090.0257
GLY 2100.0332
PRO 2110.0313
GLY 2120.0264
PRO 2130.0092
GLY 2140.0251
GLY 2150.0161
SER 2160.0370
ILE 2170.0383
GLN 2180.0229
VAL 2190.0235
ILE 2200.0165
ASN 2210.0287
GLY 2220.0094
SER 2230.0169
THR 2240.0208
ILE 2250.0080
GLY 2260.0145
THR 2270.0196
GLY 2280.0171
SER 2290.0154
LYS 2300.0123
LYS 2310.0160
THR 2320.0189
ILE 2330.0202
LEU 2340.0158
ILE 2350.0282
TYR 2360.0129
SER 2370.0093
ILE 2380.0115
ILE 2390.0113
GLY 2400.0166
VAL 2410.0082
LYS 2420.0157
LYS 2430.0325
GLY 2440.0371
THR 2450.0236
LEU 2460.0198
ALA 2470.0153
TRP 2480.0120
ALA 2490.0097
ARG 2500.0087
THR 2510.0190
GLY 2520.0179
PHE 2530.0140
SER 2540.0101
PRO 2550.0131
ALA 2560.0261
LYS 2570.0166
LYS 2580.0106
LEU 2590.0113
ASN 2600.0092
ALA 2610.0173
GLY 2620.0206
VAL 2630.0092
VAL 2640.0119
ARG 2650.0094
VAL 2660.0071
PHE 2670.0098
PHE 2680.0135
LEU 2690.0179
ASN 2700.0229
GLN 2710.0169
LYS 2720.0053
LYS 2730.0088
ALA 2740.0067
LYS 2750.0090
ASP 2760.0161
VAL 2770.0164
LEU 2780.0093
ARG 2790.0071
LYS 2800.0197
THR 2810.0198
SER 2820.0192
ARG 2830.0179
PRO 2840.0183
MET 2850.0223
VAL 2860.0354
ASP 2870.0251
LEU 2880.0273
THR 2890.0251
PHE 2900.0207
GLY 2910.0421
GLY 2920.0751

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.