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***  TLR_3_simulation  ***

<R2> analysis for 2608260340483950756

---  normal mode 106  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0774
THR 260.0058
LYS 270.0061
CYS 280.0047
THR 290.0031
VAL 300.0031
SER 310.0011
HIS 320.0017
GLU 330.0035
VAL 340.0033
ALA 350.0032
ASP 360.0033
CYS 370.0047
SER 380.0040
HIS 390.0041
LEU 400.0057
LYS 410.0092
LEU 420.0091
THR 430.0100
GLN 440.0094
VAL 450.0082
PRO 460.0090
ASP 470.0091
ASP 480.0088
LEU 490.0073
PRO 500.0065
THR 510.0058
ASN 520.0055
ILE 530.0055
THR 540.0056
VAL 550.0056
LEU 560.0052
ASN 570.0049
LEU 580.0058
THR 590.0056
HIS 600.0057
ASN 610.0084
GLN 620.0088
LEU 630.0071
ARG 640.0074
ARG 650.0057
LEU 660.0067
PRO 670.0070
ALA 680.0069
ALA 690.0066
ASN 700.0060
PHE 710.0070
THR 720.0071
ARG 730.0065
TYR 740.0065
SER 750.0071
GLN 760.0069
LEU 770.0066
THR 780.0071
SER 790.0065
LEU 800.0060
ASP 810.0054
VAL 820.0052
GLY 830.0051
PHE 840.0051
ASN 850.0053
THR 860.0066
ILE 870.0053
SER 880.0056
LYS 890.0048
LEU 900.0041
GLU 910.0060
PRO 920.0063
GLU 930.0065
LEU 940.0059
CYS 950.0060
GLN 960.0080
LYS 970.0074
LEU 980.0071
PRO 990.0080
MET 1000.0080
LEU 1010.0059
LYS 1020.0058
VAL 1030.0051
LEU 1040.0040
ASN 1050.0036
LEU 1060.0026
GLN 1070.0029
HIS 1080.0034
ASN 1090.0033
GLU 1100.0037
LEU 1110.0024
SER 1120.0039
GLN 1130.0040
LEU 1140.0038
SER 1150.0046
ASP 1160.0043
LYS 1170.0048
THR 1180.0040
PHE 1190.0029
ALA 1200.0037
PHE 1210.0053
CYS 1220.0039
THR 1230.0046
ASN 1240.0043
LEU 1250.0029
THR 1260.0028
GLU 1270.0026
LEU 1280.0016
HIS 1290.0019
LEU 1300.0016
MET 1310.0023
SER 1320.0025
ASN 1330.0021
SER 1340.0027
ILE 1350.0024
GLN 1360.0034
LYS 1370.0040
ILE 1380.0043
LYS 1390.0050
ASN 1400.0055
ASN 1410.0041
PRO 1420.0034
PHE 1430.0024
VAL 1440.0022
LYS 1450.0017
GLN 1460.0013
LYS 1470.0011
ASN 1480.0011
LEU 1490.0012
ILE 1500.0016
THR 1510.0020
LEU 1520.0019
ASP 1530.0017
LEU 1540.0019
SER 1550.0019
HIS 1560.0024
ASN 1570.0028
GLY 1580.0035
LEU 1590.0036
SER 1600.0042
SER 1610.0060
THR 1620.0056
LYS 1630.0057
LEU 1640.0054
GLY 1650.0057
THR 1660.0057
GLN 1670.0055
VAL 1680.0052
GLN 1690.0045
LEU 1700.0039
GLU 1710.0034
ASN 1720.0032
LEU 1730.0029
GLN 1740.0029
GLU 1750.0027
LEU 1760.0022
LEU 1770.0022
LEU 1780.0024
SER 1790.0026
ASN 1800.0031
ASN 1810.0045
LYS 1820.0048
ILE 1830.0047
GLN 1840.0048
ALA 1850.0048
LEU 1860.0063
LYS 1870.0069
SER 1880.0074
GLU 1890.0080
GLU 1900.0074
LEU 1910.0065
ASP 1920.0068
ILE 1930.0064
PHE 1940.0060
ALA 1950.0064
ASN 1960.0051
SER 1970.0045
SER 1980.0045
LEU 1990.0040
LYS 2000.0044
LYS 2010.0034
LEU 2020.0033
GLU 2030.0035
LEU 2040.0037
SER 2050.0041
SER 2060.0047
ASN 2070.0049
GLN 2080.0050
ILE 2090.0049
LYS 2100.0050
GLU 2110.0059
PHE 2120.0062
SER 2130.0069
PRO 2140.0074
GLY 2150.0080
CYS 2160.0067
PHE 2170.0066
HIS 2180.0073
ALA 2190.0076
ILE 2200.0074
GLY 2210.0058
ARG 2220.0053
LEU 2230.0046
PHE 2240.0048
GLY 2250.0045
LEU 2260.0044
PHE 2270.0041
LEU 2280.0041
ASN 2290.0039
ASN 2300.0042
VAL 2310.0040
GLN 2320.0034
LEU 2330.0041
GLY 2340.0042
PRO 2350.0053
SER 2360.0058
LEU 2370.0055
THR 2380.0052
GLU 2390.0066
LYS 2400.0073
LEU 2410.0060
CYS 2420.0065
LEU 2430.0076
GLU 2440.0076
LEU 2450.0072
ALA 2460.0074
ASN 2470.0081
THR 2480.0073
SER 2490.0065
ILE 2500.0053
ARG 2510.0040
ASN 2520.0035
LEU 2530.0035
SER 2540.0033
LEU 2550.0031
SER 2560.0026
ASN 2570.0024
SER 2580.0024
GLN 2590.0024
LEU 2600.0027
SER 2610.0032
THR 2620.0039
THR 2630.0035
SER 2640.0047
ASN 2650.0051
THR 2660.0070
THR 2670.0052
PHE 2680.0048
LEU 2690.0066
GLY 2700.0067
LEU 2710.0057
LYS 2720.0069
TRP 2730.0075
THR 2740.0058
ASN 2750.0045
LEU 2760.0030
THR 2770.0027
MET 2780.0029
LEU 2790.0027
ASP 2800.0030
LEU 2810.0020
SER 2820.0024
TYR 2830.0027
ASN 2840.0026
ASN 2850.0032
LEU 2860.0034
ASN 2870.0040
VAL 2880.0038
VAL 2890.0033
GLY 2900.0033
ASN 2910.0032
ASP 2920.0034
SER 2930.0033
PHE 2940.0036
ALA 2950.0038
TRP 2960.0042
LEU 2970.0033
PRO 2980.0036
GLN 2990.0035
LEU 3000.0039
GLU 3010.0059
TYR 3020.0055
PHE 3030.0046
PHE 3040.0041
LEU 3050.0035
GLU 3060.0034
TYR 3070.0035
ASN 3080.0035
ASN 3090.0034
ILE 3100.0033
GLN 3110.0031
HIS 3120.0026
LEU 3130.0025
PHE 3140.0027
SER 3150.0025
HIS 3160.0038
SER 3170.0032
LEU 3180.0038
HIS 3190.0045
GLY 3200.0053
LEU 3210.0059
PHE 3220.0071
ASN 3230.0075
VAL 3240.0065
ARG 3250.0068
TYR 3260.0056
LEU 3270.0045
ASN 3280.0038
LEU 3290.0024
LYS 3300.0029
ARG 3310.0025
SER 3320.0024
PHE 3330.0019
THR 3340.0028
LYS 3350.0027
GLN 3360.0067
SER 3370.0114
ILE 3380.0162
SER 3390.0204
LEU 3400.0168
ALA 3410.0095
SER 3420.0080
LEU 3430.0047
PRO 3440.0028
LYS 3450.0061
ILE 3460.0022
ASP 3470.0041
ASP 3480.0057
PHE 3490.0056
SER 3500.0040
PHE 3510.0038
GLN 3520.0058
TRP 3530.0064
LEU 3540.0059
LYS 3550.0073
CYS 3560.0082
LEU 3570.0060
GLU 3580.0056
HIS 3590.0047
LEU 3600.0027
ASN 3610.0027
MET 3620.0021
GLU 3630.0042
ASP 3640.0053
ASN 3650.0044
ASP 3660.0057
ILE 3670.0061
PRO 3680.0084
GLY 3690.0094
ILE 3700.0090
LYS 3710.0087
SER 3720.0094
ASN 3730.0080
MET 3740.0055
PHE 3750.0036
THR 3760.0063
GLY 3770.0070
LEU 3780.0050
ILE 3790.0065
ASN 3800.0059
LEU 3810.0032
LYS 3820.0031
TYR 3830.0035
LEU 3840.0029
SER 3850.0054
LEU 3860.0069
SER 3870.0086
ASN 3880.0098
SER 3890.0084
PHE 3900.0098
THR 3910.0120
SER 3920.0126
LEU 3930.0116
ARG 3940.0127
THR 3950.0122
LEU 3960.0108
THR 3970.0105
ASN 3980.0089
GLU 3990.0095
THR 4000.0093
PHE 4010.0074
VAL 4020.0078
SER 4030.0067
LEU 4040.0044
ALA 4050.0047
HIS 4060.0057
SER 4070.0034
PRO 4080.0023
LEU 4090.0015
HIS 4100.0030
ILE 4110.0048
LEU 4120.0056
ASN 4130.0075
LEU 4140.0088
THR 4150.0106
LYS 4160.0127
ASN 4170.0119
LYS 4180.0131
ILE 4190.0107
SER 4200.0111
LYS 4210.0096
ILE 4220.0079
GLU 4230.0071
SER 4240.0055
ASP 4250.0045
ALA 4260.0073
PHE 4270.0056
SER 4280.0044
TRP 4290.0041
LEU 4300.0030
GLY 4310.0025
HIS 4320.0023
LEU 4330.0034
GLU 4340.0040
VAL 4350.0050
LEU 4360.0054
ASP 4370.0067
LEU 4380.0069
GLY 4390.0081
LEU 4400.0095
ASN 4410.0107
GLU 4420.0097
ILE 4430.0077
GLY 4440.0067
GLN 4450.0049
GLU 4460.0057
LEU 4470.0054
THR 4480.0051
GLY 4490.0049
GLN 4500.0047
GLU 4510.0042
TRP 4520.0040
ARG 4530.0032
GLY 4540.0030
LEU 4550.0035
GLU 4560.0033
ASN 4570.0035
ILE 4580.0033
PHE 4590.0034
GLU 4600.0034
ILE 4610.0037
TYR 4620.0044
LEU 4630.0046
SER 4640.0055
TYR 4650.0062
ASN 4660.0080
LYS 4670.0073
TYR 4680.0069
LEU 4690.0065
GLN 4700.0068
LEU 4710.0084
THR 4720.0086
ARG 4730.0080
ASN 4740.0071
SER 4750.0063
PHE 4760.0047
ALA 4770.0049
LEU 4780.0044
VAL 4790.0035
PRO 4800.0034
SER 4810.0022
LEU 4820.0020
GLN 4830.0023
ARG 4840.0029
LEU 4850.0032
MET 4860.0041
LEU 4870.0048
ARG 4880.0053
ARG 4890.0064
VAL 4900.0066
ALA 4910.0091
LEU 4920.0081
LYS 4930.0088
ASN 4940.0087
VAL 4950.0079
ASP 4960.0088
SER 4970.0090
SER 4980.0085
PRO 4990.0068
SER 5000.0059
PRO 5010.0058
PHE 5020.0040
GLN 5030.0035
PRO 5040.0036
LEU 5050.0020
ARG 5060.0016
ASN 5070.0022
LEU 5080.0025
THR 5090.0037
ILE 5100.0045
LEU 5110.0043
ASP 5120.0050
LEU 5130.0052
SER 5140.0060
ASN 5150.0067
ASN 5160.0064
ASN 5170.0077
ILE 5180.0071
ALA 5190.0081
ASN 5200.0072
ILE 5210.0065
ASN 5220.0042
ASP 5230.0025
ASP 5240.0011
MET 5250.0030
LEU 5260.0022
GLU 5270.0009
GLY 5280.0013
LEU 5290.0018
GLU 5300.0033
LYS 5310.0043
LEU 5320.0043
GLU 5330.0061
ILE 5340.0064
LEU 5350.0053
ASP 5360.0056
LEU 5370.0058
GLN 5380.0065
HIS 5390.0068
ASN 5400.0063
ASN 5410.0085
LEU 5420.0084
ALA 5430.0085
ARG 5440.0083
LEU 5450.0081
TRP 5460.0093
LYS 5470.0097
HIS 5480.0109
ALA 5490.0121
ASN 5500.0130
PRO 5510.0201
GLY 5520.0193
GLY 5530.0158
PRO 5540.0110
ILE 5550.0085
TYR 5560.0077
PHE 5570.0073
LEU 5580.0075
LYS 5590.0072
GLY 5600.0070
LEU 5610.0067
SER 5620.0075
HIS 5630.0078
LEU 5640.0075
HIS 5650.0082
ILE 5660.0082
LEU 5670.0072
ASN 5680.0069
LEU 5690.0059
GLU 5700.0058
SER 5710.0064
ASN 5720.0068
GLY 5730.0055
PHE 5740.0055
ASP 5750.0044
GLU 5760.0063
ILE 5770.0072
PRO 5780.0082
VAL 5790.0086
GLU 5800.0097
VAL 5810.0085
PHE 5820.0081
LYS 5830.0086
ASP 5840.0090
LEU 5850.0085
PHE 5860.0097
GLU 5870.0096
LEU 5880.0083
LYS 5890.0074
ILE 5900.0066
ILE 5910.0065
ASP 5920.0056
LEU 5930.0042
GLY 5940.0035
LEU 5950.0032
ASN 5960.0030
ASN 5970.0017
LEU 5980.0014
ASN 5990.0035
THR 6000.0053
LEU 6010.0052
PRO 6020.0073
ALA 6030.0084
SER 6040.0090
VAL 6050.0082
PHE 6060.0069
ASN 6070.0085
ASN 6080.0094
GLN 6090.0077
VAL 6100.0078
SER 6110.0075
LEU 6120.0059
LYS 6130.0049
SER 6140.0038
LEU 6150.0029
ASN 6160.0020
LEU 6170.0011
GLN 6180.0011
LYS 6190.0029
ASN 6200.0025
LEU 6210.0059
ILE 6220.0058
THR 6230.0064
SER 6240.0063
VAL 6250.0059
GLU 6260.0055
LYS 6270.0060
LYS 6280.0066
VAL 6290.0048
PHE 6300.0038
GLY 6310.0055
PRO 6320.0057
ALA 6330.0040
PHE 6340.0030
ARG 6350.0039
ASN 6360.0041
LEU 6370.0028
THR 6380.0020
GLU 6390.0019
LEU 6400.0019
ASP 6410.0021
MET 6420.0033
ARG 6430.0036
PHE 6440.0046
ASN 6450.0051
PRO 6460.0074
PHE 6470.0064
ASP 6480.0066
CYS 6490.0053
THR 6500.0066
CYS 6510.0086
GLU 6520.0117
SER 6530.0106
ILE 6540.0081
ALA 6550.0085
TRP 6560.0051
PHE 6570.0049
VAL 6580.0059
ASN 6590.0059
TRP 6600.0051
ILE 6610.0050
ASN 6620.0050
GLU 6630.0042
THR 6640.0039
HIS 6650.0038
THR 6660.0035
ASN 6670.0037
ILE 6680.0031
PRO 6690.0034
GLU 6700.0031
LEU 6710.0039
SER 6720.0038
SER 6730.0039
HIS 6740.0039
TYR 6750.0039
LEU 6760.0049
CYS 6770.0044
ASN 6780.0061
THR 6790.0066
PRO 6800.0047
PRO 6810.0028
HIS 6820.0035
TYR 6830.0025
HIS 6840.0046
GLY 6850.0066
PHE 6860.0045
PRO 6870.0040
VAL 6880.0026
ARG 6890.0022
LEU 6900.0022
PHE 6910.0082
ASP 6920.0144
THR 6930.0178
SER 6940.0298
SER 6950.0336
CYS 6960.0355
GLU 10.0293
ALA 20.0241
ALA 30.0097
ALA 40.0111
LYS 50.0140
MET 60.0140
GLN 70.0105
ARG 80.0067
LEU 90.0117
VAL 100.0147
LEU 110.0064
LEU 120.0065
LEU 130.0083
ALA 140.0059
ILE 150.0044
SER 160.0071
LEU 170.0083
LEU 180.0073
LEU 190.0070
TYR 200.0091
GLN 210.0127
ASP 220.0122
LEU 230.0091
PRO 240.0118
VAL 250.0103
ARG 260.0039
SER 270.0032
GLU 280.0080
PHE 290.0079
GLU 300.0036
LEU 310.0087
ASP 320.0069
ARG 330.0067
ILE 340.0082
CYS 350.0078
GLY 360.0159
TYR 370.0205
GLY 380.0149
THR 390.0106
ALA 400.0066
ARG 410.0082
CYS 420.0067
ARG 430.0059
LYS 440.0041
LYS 450.0043
CYS 460.0077
ARG 470.0125
SER 480.0150
GLN 490.0131
GLU 500.0075
TYR 510.0041
ARG 520.0022
ILE 530.0013
GLY 540.0012
ARG 550.0032
CYS 560.0048
PRO 570.0059
ASN 580.0055
THR 590.0038
TYR 600.0033
ALA 610.0035
CYS 620.0039
CYS 630.0045
LEU 640.0047
ARG 650.0058
LYS 660.0119
TRP 670.0190
ASP 680.0049
GLU 690.0179
SER 700.0036
LEU 710.0129
LEU 720.0153
ASN 730.0057
ARG 740.0086
THR 750.0148
LYS 760.0110
PRO 770.0112
GLU 780.0206
ALA 790.0247
ALA 800.0154
ALA 810.0330
LYS 820.0240
LYS 830.0208
GLU 840.0153
MET 850.0116
ASN 860.0083
LEU 870.0093
SER 880.0096
VAL 890.0102
GLY 900.0114
LEU 910.0101
GLY 920.0163
GLY 930.0235
GLY 940.0239
SER 950.0181
ASN 960.0120
LEU 970.0095
SER 980.0100
VAL 990.0094
GLY 1000.0103
LEU 1010.0066
GLY 1020.0289
GLU 1030.0379
ILE 1040.0392
GLY 1050.0455
GLY 1060.0436
GLY 1070.0387
SER 1080.0344
LYS 1090.0242
LEU 1100.0217
LEU 1110.0154
ASP 1120.0143
ILE 1130.0122
ASN 1140.0118
LEU 1150.0103
GLY 1160.0088
ARG 1170.0140
GLY 1180.0066
GLY 1190.0065
GLY 1200.0101
SER 1210.0105
MET 1220.0065
VAL 1230.0070
ASP 1240.0069
LEU 1250.0062
THR 1260.0095
PHE 1270.0102
GLY 1280.0146
GLY 1290.0151
VAL 1300.0182
GLY 1310.0312
GLY 1320.0233
GLY 1330.0109
SER 1340.0153
THR 1350.0094
PHE 1360.0104
THR 1370.0114
PHE 1380.0094
PHE 1390.0126
PRO 1400.0123
LEU 1410.0124
VAL 1420.0083
ILE 1430.0109
GLY 1440.0178
GLY 1450.0221
GLY 1460.0118
SER 1470.0111
ASP 1480.0077
ALA 1490.0094
MET 1500.0093
TYR 1510.0103
LEU 1520.0105
GLY 1530.0140
PHE 1540.0144
ALA 1550.0191
ALA 1560.0264
GLY 1570.0242
GLY 1580.0222
GLY 1590.0152
SER 1600.0091
ALA 1610.0199
GLY 1620.0204
GLY 1630.0202
GLU 1640.0169
ASN 1650.0149
HIS 1660.0142
VAL 1670.0132
ALA 1680.0132
PHE 1690.0119
GLY 1700.0132
PRO 1710.0201
GLY 1720.0222
PRO 1730.0294
GLY 1740.0125
VAL 1750.0153
ASP 1760.0185
LEU 1770.0166
THR 1780.0173
PHE 1790.0172
GLY 1800.0188
GLY 1810.0233
VAL 1820.0222
GLN 1830.0196
PHE 1840.0161
ALA 1850.0161
MET 1860.0167
VAL 1870.0294
ASN 1880.0281
ASN 1890.0261
GLY 1900.0367
PRO 1910.0161
GLY 1920.0282
PRO 1930.0287
GLY 1940.0181
GLU 1950.0210
SER 1960.0483
PHE 1970.0351
THR 1980.0230
ALA 1990.0141
GLN 2000.0128
PRO 2010.0212
ALA 2020.0061
ASP 2030.0185
MET 2040.0213
GLN 2050.0153
ALA 2060.0585
GLY 2070.0405
ILE 2080.0160
LYS 2090.0083
GLY 2100.0285
PRO 2110.0340
GLY 2120.0270
PRO 2130.0073
GLY 2140.0390
GLY 2150.0308
SER 2160.0284
ILE 2170.0271
GLN 2180.0120
VAL 2190.0132
ILE 2200.0111
ASN 2210.0226
GLY 2220.0104
SER 2230.0143
THR 2240.0081
ILE 2250.0121
GLY 2260.0138
THR 2270.0146
GLY 2280.0123
SER 2290.0145
LYS 2300.0113
LYS 2310.0137
THR 2320.0129
ILE 2330.0099
LEU 2340.0092
ILE 2350.0073
TYR 2360.0067
SER 2370.0063
ILE 2380.0074
ILE 2390.0056
GLY 2400.0070
VAL 2410.0199
LYS 2420.0130
LYS 2430.0114
GLY 2440.0289
THR 2450.0272
LEU 2460.0086
ALA 2470.0075
TRP 2480.0065
ALA 2490.0039
ARG 2500.0030
THR 2510.0216
GLY 2520.0250
PHE 2530.0186
SER 2540.0211
PRO 2550.0211
ALA 2560.0386
LYS 2570.0305
LYS 2580.0186
LEU 2590.0115
ASN 2600.0180
ALA 2610.0358
GLY 2620.0272
VAL 2630.0255
VAL 2640.0233
ARG 2650.0146
VAL 2660.0053
PHE 2670.0077
PHE 2680.0159
LEU 2690.0155
ASN 2700.0230
GLN 2710.0217
LYS 2720.0136
LYS 2730.0115
ALA 2740.0019
LYS 2750.0134
ASP 2760.0215
VAL 2770.0143
LEU 2780.0046
ARG 2790.0064
LYS 2800.0099
THR 2810.0350
SER 2820.0345
ARG 2830.0237
PRO 2840.0210
MET 2850.0217
VAL 2860.0462
ASP 2870.0326
LEU 2880.0187
THR 2890.0110
PHE 2900.0185
GLY 2910.0416
GLY 2920.0774

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.