CNRS Nantes University US2B US2B
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***  TLR_3_simulation  ***

<R2> analysis for 2608260340483950756

---  normal mode 15  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0239
THR 260.0213
LYS 270.0212
CYS 280.0206
THR 290.0217
VAL 300.0220
SER 310.0225
HIS 320.0224
GLU 330.0215
VAL 340.0201
ALA 350.0199
ASP 360.0195
CYS 370.0187
SER 380.0179
HIS 390.0179
LEU 400.0183
LYS 410.0172
LEU 420.0170
THR 430.0156
GLN 440.0165
VAL 450.0174
PRO 460.0194
ASP 470.0207
ASP 480.0226
LEU 490.0221
PRO 500.0232
THR 510.0228
ASN 520.0228
ILE 530.0210
THR 540.0193
VAL 550.0179
LEU 560.0178
ASN 570.0171
LEU 580.0163
THR 590.0156
HIS 600.0155
ASN 610.0153
GLN 620.0142
LEU 630.0135
ARG 640.0117
ARG 650.0121
LEU 660.0135
PRO 670.0149
ALA 680.0161
ALA 690.0180
ASN 700.0181
PHE 710.0180
THR 720.0198
ARG 730.0213
TYR 740.0199
SER 750.0199
GLN 760.0201
LEU 770.0181
THR 780.0168
SER 790.0155
LEU 800.0149
ASP 810.0143
VAL 820.0135
GLY 830.0126
PHE 840.0127
ASN 850.0122
THR 860.0105
ILE 870.0100
SER 880.0083
LYS 890.0092
LEU 900.0106
GLU 910.0123
PRO 920.0130
GLU 930.0152
LEU 940.0150
CYS 950.0147
GLN 960.0168
LYS 970.0179
LEU 980.0171
PRO 990.0175
MET 1000.0172
LEU 1010.0152
LYS 1020.0139
VAL 1030.0129
LEU 1040.0119
ASN 1050.0113
LEU 1060.0100
GLN 1070.0097
HIS 1080.0098
ASN 1090.0091
GLU 1100.0075
LEU 1110.0068
SER 1120.0056
GLN 1130.0062
LEU 1140.0071
SER 1150.0089
ASP 1160.0105
LYS 1170.0117
THR 1180.0104
PHE 1190.0107
ALA 1200.0125
PHE 1210.0142
CYS 1220.0132
THR 1230.0137
ASN 1240.0141
LEU 1250.0121
THR 1260.0113
GLU 1270.0103
LEU 1280.0090
HIS 1290.0086
LEU 1300.0072
MET 1310.0077
SER 1320.0079
ASN 1330.0067
SER 1340.0061
ILE 1350.0053
GLN 1360.0062
LYS 1370.0067
ILE 1380.0069
LYS 1390.0086
ASN 1400.0102
ASN 1410.0098
PRO 1420.0089
PHE 1430.0087
VAL 1440.0105
LYS 1450.0118
GLN 1460.0106
LYS 1470.0113
ASN 1480.0114
LEU 1490.0095
ILE 1500.0089
THR 1510.0078
LEU 1520.0066
ASP 1530.0065
LEU 1540.0056
SER 1550.0068
HIS 1560.0079
ASN 1570.0067
GLY 1580.0072
LEU 1590.0068
SER 1600.0085
SER 1610.0082
THR 1620.0070
LYS 1630.0078
LEU 1640.0071
GLY 1650.0089
THR 1660.0108
GLN 1670.0112
VAL 1680.0103
GLN 1690.0095
LEU 1700.0084
GLU 1710.0089
ASN 1720.0087
LEU 1730.0071
GLN 1740.0066
GLU 1750.0062
LEU 1760.0052
LEU 1770.0057
LEU 1780.0059
SER 1790.0075
ASN 1800.0087
ASN 1810.0081
LYS 1820.0094
ILE 1830.0092
GLN 1840.0111
ALA 1850.0109
LEU 1860.0095
LYS 1870.0103
SER 1880.0102
GLU 1890.0107
GLU 1900.0090
LEU 1910.0080
ASP 1920.0092
ILE 1930.0086
PHE 1940.0074
ALA 1950.0087
ASN 1960.0087
SER 1970.0071
SER 1980.0061
LEU 1990.0053
LYS 2000.0056
LYS 2010.0054
LEU 2020.0054
GLU 2030.0063
LEU 2040.0072
SER 2050.0085
SER 2060.0098
ASN 2070.0097
GLN 2080.0114
ILE 2090.0110
LYS 2100.0127
GLU 2110.0121
PHE 2120.0108
SER 2130.0115
PRO 2140.0117
GLY 2150.0104
CYS 2160.0093
PHE 2170.0078
HIS 2180.0084
ALA 2190.0086
ILE 2200.0070
GLY 2210.0073
ARG 2220.0059
LEU 2230.0053
PHE 2240.0050
GLY 2250.0055
LEU 2260.0062
PHE 2270.0070
LEU 2280.0084
ASN 2290.0093
ASN 2300.0108
VAL 2310.0110
GLN 2320.0123
LEU 2330.0118
GLY 2340.0124
PRO 2350.0118
SER 2360.0127
LEU 2370.0117
THR 2380.0103
GLU 2390.0106
LYS 2400.0109
LEU 2410.0096
CYS 2420.0088
LEU 2430.0096
GLU 2440.0092
LEU 2450.0077
ALA 2460.0078
ASN 2470.0073
THR 2480.0066
SER 2490.0056
ILE 2500.0054
ARG 2510.0051
ASN 2520.0056
LEU 2530.0067
SER 2540.0077
LEU 2550.0091
SER 2560.0097
ASN 2570.0112
SER 2580.0112
GLN 2590.0123
LEU 2600.0115
SER 2610.0118
THR 2620.0110
THR 2630.0097
SER 2640.0096
ASN 2650.0088
THR 2660.0098
THR 2670.0095
PHE 2680.0083
LEU 2690.0084
GLY 2700.0082
LEU 2710.0071
LYS 2720.0068
TRP 2730.0068
THR 2740.0060
ASN 2750.0051
LEU 2760.0055
THR 2770.0050
MET 2780.0059
LEU 2790.0069
ASP 2800.0079
LEU 2810.0087
SER 2820.0096
TYR 2830.0111
ASN 2840.0112
ASN 2850.0118
LEU 2860.0106
ASN 2870.0107
VAL 2880.0099
VAL 2890.0088
GLY 2900.0086
ASN 2910.0073
ASP 2920.0068
SER 2930.0076
PHE 2940.0068
ALA 2950.0062
TRP 2960.0066
LEU 2970.0058
PRO 2980.0049
GLN 2990.0045
LEU 3000.0051
GLU 3010.0047
TYR 3020.0057
PHE 3030.0064
PHE 3040.0075
LEU 3050.0082
GLU 3060.0093
TYR 3070.0107
ASN 3080.0105
ASN 3090.0108
ILE 3100.0095
GLN 3110.0094
HIS 3120.0081
LEU 3130.0071
PHE 3140.0063
SER 3150.0051
HIS 3160.0056
SER 3170.0065
LEU 3180.0057
HIS 3190.0051
GLY 3200.0049
LEU 3210.0048
PHE 3220.0039
ASN 3230.0040
VAL 3240.0046
ARG 3250.0046
TYR 3260.0056
LEU 3270.0061
ASN 3280.0075
LEU 3290.0079
LYS 3300.0092
ARG 3310.0102
SER 3320.0093
PHE 3330.0094
THR 3340.0105
LYS 3350.0116
GLN 3360.0114
SER 3370.0123
ILE 3380.0124
SER 3390.0127
LEU 3400.0115
ALA 3410.0101
SER 3420.0099
LEU 3430.0091
PRO 3440.0084
LYS 3450.0068
ILE 3460.0064
ASP 3470.0052
ASP 3480.0043
PHE 3490.0038
SER 3500.0046
PHE 3510.0046
GLN 3520.0037
TRP 3530.0038
LEU 3540.0040
LYS 3550.0034
CYS 3560.0037
LEU 3570.0044
GLU 3580.0049
HIS 3590.0059
LEU 3600.0063
ASN 3610.0076
MET 3620.0077
GLU 3630.0091
ASP 3640.0101
ASN 3650.0094
ASP 3660.0094
ILE 3670.0080
PRO 3680.0077
GLY 3690.0073
ILE 3700.0065
LYS 3710.0060
SER 3720.0057
ASN 3730.0047
MET 3740.0051
PHE 3750.0050
THR 3760.0043
GLY 3770.0038
LEU 3780.0042
ILE 3790.0040
ASN 3800.0041
LEU 3810.0050
LYS 3820.0056
TYR 3830.0065
LEU 3840.0067
SER 3850.0078
LEU 3860.0081
SER 3870.0094
ASN 3880.0099
SER 3890.0086
PHE 3900.0086
THR 3910.0095
SER 3920.0100
LEU 3930.0095
ARG 3940.0109
THR 3950.0107
LEU 3960.0100
THR 3970.0101
ASN 3980.0098
GLU 3990.0089
THR 4000.0084
PHE 4010.0075
VAL 4020.0071
SER 4030.0060
LEU 4040.0060
ALA 4050.0064
HIS 4060.0054
SER 4070.0053
PRO 4080.0054
LEU 4090.0060
HIS 4100.0067
ILE 4110.0073
LEU 4120.0077
ASN 4130.0085
LEU 4140.0091
THR 4150.0101
LYS 4160.0109
ASN 4170.0101
LYS 4180.0112
ILE 4190.0110
SER 4200.0121
LYS 4210.0119
ILE 4220.0112
GLU 4230.0115
SER 4240.0113
ASP 4250.0104
ALA 4260.0097
PHE 4270.0089
SER 4280.0089
TRP 4290.0078
LEU 4300.0074
GLY 4310.0075
HIS 4320.0068
LEU 4330.0073
GLU 4340.0075
VAL 4350.0081
LEU 4360.0088
ASP 4370.0094
LEU 4380.0102
GLY 4390.0109
LEU 4400.0115
ASN 4410.0119
GLU 4420.0127
ILE 4430.0126
GLY 4440.0136
GLN 4450.0135
GLU 4460.0136
LEU 4470.0125
THR 4480.0126
GLY 4490.0115
GLN 4500.0114
GLU 4510.0109
TRP 4520.0101
ARG 4530.0100
GLY 4540.0090
LEU 4550.0086
GLU 4560.0083
ASN 4570.0076
ILE 4580.0080
PHE 4590.0079
GLU 4600.0085
ILE 4610.0094
TYR 4620.0099
LEU 4630.0109
SER 4640.0112
TYR 4650.0121
ASN 4660.0127
LYS 4670.0138
TYR 4680.0138
LEU 4690.0131
GLN 4700.0134
LEU 4710.0123
THR 4720.0124
ARG 4730.0117
ASN 4740.0117
SER 4750.0115
PHE 4760.0105
ALA 4770.0104
LEU 4780.0101
VAL 4790.0093
PRO 4800.0089
SER 4810.0084
LEU 4820.0086
GLN 4830.0081
ARG 4840.0086
LEU 4850.0095
MET 4860.0101
LEU 4870.0110
ARG 4880.0114
ARG 4890.0125
VAL 4900.0129
ALA 4910.0136
LEU 4920.0127
LYS 4930.0132
ASN 4940.0129
VAL 4950.0116
ASP 4960.0112
SER 4970.0115
SER 4980.0112
PRO 4990.0105
SER 5000.0102
PRO 5010.0107
PHE 5020.0097
GLN 5030.0093
PRO 5040.0095
LEU 5050.0089
ARG 5060.0082
ASN 5070.0080
LEU 5080.0082
THR 5090.0076
ILE 5100.0082
LEU 5110.0091
ASP 5120.0100
LEU 5130.0108
SER 5140.0113
ASN 5150.0125
ASN 5160.0127
ASN 5170.0126
ILE 5180.0117
ALA 5190.0113
ASN 5200.0108
ILE 5210.0097
ASN 5220.0092
ASP 5230.0079
ASP 5240.0083
MET 5250.0089
LEU 5260.0080
GLU 5270.0078
GLY 5280.0077
LEU 5290.0075
GLU 5300.0064
LYS 5310.0067
LEU 5320.0072
GLU 5330.0068
ILE 5340.0078
LEU 5350.0083
ASP 5360.0095
LEU 5370.0097
GLN 5380.0106
HIS 5390.0118
ASN 5400.0114
ASN 5410.0107
LEU 5420.0091
ALA 5430.0082
ARG 5440.0080
LEU 5450.0073
TRP 5460.0056
LYS 5470.0052
HIS 5480.0038
ALA 5490.0047
ASN 5500.0062
PRO 5510.0070
GLY 5520.0072
GLY 5530.0053
PRO 5540.0051
ILE 5550.0064
TYR 5560.0055
PHE 5570.0068
LEU 5580.0058
LYS 5590.0052
GLY 5600.0055
LEU 5610.0056
SER 5620.0046
HIS 5630.0052
LEU 5640.0058
HIS 5650.0060
ILE 5660.0072
LEU 5670.0073
ASN 5680.0089
LEU 5690.0087
GLU 5700.0102
SER 5710.0112
ASN 5720.0100
GLY 5730.0095
PHE 5740.0076
ASP 5750.0068
GLU 5760.0051
ILE 5770.0043
PRO 5780.0029
VAL 5790.0025
GLU 5800.0025
VAL 5810.0036
PHE 5820.0034
LYS 5830.0028
ASP 5840.0032
LEU 5850.0035
PHE 5860.0032
GLU 5870.0040
LEU 5880.0048
LYS 5890.0060
ILE 5900.0073
ILE 5910.0070
ASP 5920.0088
LEU 5930.0084
GLY 5940.0104
LEU 5950.0116
ASN 5960.0102
ASN 5970.0091
LEU 5980.0077
ASN 5990.0080
THR 6000.0066
LEU 6010.0059
PRO 6020.0050
ALA 6030.0061
SER 6040.0054
VAL 6050.0039
PHE 6060.0045
ASN 6070.0045
ASN 6080.0034
GLN 6090.0039
VAL 6100.0041
SER 6110.0044
LEU 6120.0057
LYS 6130.0076
SER 6140.0088
LEU 6150.0086
ASN 6160.0100
LEU 6170.0099
GLN 6180.0124
LYS 6190.0132
ASN 6200.0111
LEU 6210.0110
ILE 6220.0106
THR 6230.0121
SER 6240.0116
VAL 6250.0113
GLU 6260.0109
LYS 6270.0106
LYS 6280.0092
VAL 6290.0075
PHE 6300.0084
GLY 6310.0089
PRO 6320.0071
ALA 6330.0069
PHE 6340.0090
ARG 6350.0086
ASN 6360.0077
LEU 6370.0090
THR 6380.0104
GLU 6390.0114
LEU 6400.0115
ASP 6410.0128
MET 6420.0126
ARG 6430.0150
PHE 6440.0158
ASN 6450.0140
PRO 6460.0148
PHE 6470.0151
ASP 6480.0155
CYS 6490.0178
THR 6500.0181
CYS 6510.0183
GLU 6520.0160
SER 6530.0145
ILE 6540.0155
ALA 6550.0171
TRP 6560.0151
PHE 6570.0145
VAL 6580.0170
ASN 6590.0168
TRP 6600.0147
ILE 6610.0160
ASN 6620.0174
GLU 6630.0157
THR 6640.0140
HIS 6650.0135
THR 6660.0128
ASN 6670.0144
ILE 6680.0152
PRO 6690.0172
GLU 6700.0193
LEU 6710.0187
SER 6720.0211
SER 6730.0215
HIS 6740.0191
TYR 6750.0178
LEU 6760.0190
CYS 6770.0186
ASN 6780.0181
THR 6790.0172
PRO 6800.0194
PRO 6810.0216
HIS 6820.0236
TYR 6830.0220
HIS 6840.0216
GLY 6850.0223
PHE 6860.0225
PRO 6870.0211
VAL 6880.0191
ARG 6890.0199
LEU 6900.0224
PHE 6910.0215
ASP 6920.0228
THR 6930.0213
SER 6940.0237
SER 6950.0239
CYS 6960.0215
GLU 10.0132
ALA 20.0148
ALA 30.0145
ALA 40.0131
LYS 50.0139
MET 60.0152
GLN 70.0143
ARG 80.0134
LEU 90.0148
VAL 100.0155
LEU 110.0142
LEU 120.0138
LEU 130.0153
ALA 140.0152
ILE 150.0139
SER 160.0138
LEU 170.0151
LEU 180.0149
LEU 190.0131
TYR 200.0134
GLN 210.0152
ASP 220.0142
LEU 230.0122
PRO 240.0135
VAL 250.0136
ARG 260.0156
SER 270.0175
GLU 280.0162
PHE 290.0180
GLU 300.0200
LEU 310.0203
ASP 320.0193
ARG 330.0205
ILE 340.0217
CYS 350.0218
GLY 360.0225
TYR 370.0231
GLY 380.0230
THR 390.0235
ALA 400.0225
ARG 410.0217
CYS 420.0207
ARG 430.0209
LYS 440.0203
LYS 450.0211
CYS 460.0224
ARG 470.0230
SER 480.0233
GLN 490.0232
GLU 500.0226
TYR 510.0223
ARG 520.0214
ILE 530.0217
GLY 540.0207
ARG 550.0197
CYS 560.0194
PRO 570.0183
ASN 580.0178
THR 590.0179
TYR 600.0189
ALA 610.0207
CYS 620.0214
CYS 630.0216
LEU 640.0223
ARG 650.0224
LYS 660.0225
TRP 670.0185
ASP 680.0145
GLU 690.0105
SER 700.0074
LEU 710.0086
LEU 720.0043
ASN 730.0014
ARG 740.0068
THR 750.0061
LYS 760.0063
PRO 770.0115
GLU 780.0165
ALA 790.0203
ALA 800.0183
ALA 810.0122
LYS 820.0111
LYS 830.0104
GLU 840.0103
MET 850.0092
ASN 860.0094
LEU 870.0085
SER 880.0089
VAL 890.0082
GLY 900.0087
LEU 910.0085
GLY 920.0088
GLY 930.0098
GLY 940.0105
SER 950.0101
ASN 960.0099
LEU 970.0093
SER 980.0097
VAL 990.0092
GLY 1000.0099
LEU 1010.0092
GLY 1020.0099
GLU 1030.0093
ILE 1040.0090
GLY 1050.0083
GLY 1060.0076
GLY 1070.0073
SER 1080.0064
LYS 1090.0068
LEU 1100.0061
LEU 1110.0065
ASP 1120.0067
ILE 1130.0068
ASN 1140.0070
LEU 1150.0068
GLY 1160.0074
ARG 1170.0068
GLY 1180.0073
GLY 1190.0066
GLY 1200.0069
SER 1210.0071
MET 1220.0070
VAL 1230.0069
ASP 1240.0073
LEU 1250.0069
THR 1260.0076
PHE 1270.0073
GLY 1280.0082
GLY 1290.0079
VAL 1300.0076
GLY 1310.0051
GLY 1320.0043
GLY 1330.0040
SER 1340.0038
THR 1350.0037
PHE 1360.0041
THR 1370.0034
PHE 1380.0036
PHE 1390.0031
PRO 1400.0033
LEU 1410.0029
VAL 1420.0031
ILE 1430.0029
GLY 1440.0030
GLY 1450.0030
GLY 1460.0032
SER 1470.0039
ASP 1480.0046
ALA 1490.0045
MET 1500.0043
TYR 1510.0039
LEU 1520.0041
GLY 1530.0037
PHE 1540.0039
ALA 1550.0034
ALA 1560.0033
GLY 1570.0032
GLY 1580.0034
GLY 1590.0033
SER 1600.0034
ALA 1610.0042
GLY 1620.0053
GLY 1630.0064
GLU 1640.0069
ASN 1650.0064
HIS 1660.0067
VAL 1670.0060
ALA 1680.0064
PHE 1690.0059
GLY 1700.0064
PRO 1710.0063
GLY 1720.0063
PRO 1730.0057
GLY 1740.0058
VAL 1750.0054
ASP 1760.0062
LEU 1770.0057
THR 1780.0065
PHE 1790.0060
GLY 1800.0068
GLY 1810.0078
VAL 1820.0072
GLN 1830.0071
PHE 1840.0062
ALA 1850.0065
MET 1860.0055
VAL 1870.0065
ASN 1880.0067
ASN 1890.0073
GLY 1900.0076
PRO 1910.0094
GLY 1920.0103
PRO 1930.0127
GLY 1940.0144
GLU 1950.0135
SER 1960.0148
PHE 1970.0154
THR 1980.0174
ALA 1990.0191
GLN 2000.0204
PRO 2010.0231
ALA 2020.0231
ASP 2030.0198
MET 2040.0200
GLN 2050.0211
ALA 2060.0179
GLY 2070.0174
ILE 2080.0132
LYS 2090.0133
GLY 2100.0124
PRO 2110.0101
GLY 2120.0092
PRO 2130.0074
GLY 2140.0067
GLY 2150.0076
SER 2160.0060
ILE 2170.0032
GLN 2180.0020
VAL 2190.0033
ILE 2200.0050
ASN 2210.0066
GLY 2220.0068
SER 2230.0080
THR 2240.0085
ILE 2250.0089
GLY 2260.0104
THR 2270.0102
GLY 2280.0090
SER 2290.0070
LYS 2300.0061
LYS 2310.0052
THR 2320.0047
ILE 2330.0035
LEU 2340.0039
ILE 2350.0025
TYR 2360.0024
SER 2370.0039
ILE 2380.0041
ILE 2390.0058
GLY 2400.0063
VAL 2410.0054
LYS 2420.0059
LYS 2430.0052
GLY 2440.0028
THR 2450.0034
LEU 2460.0031
ALA 2470.0049
TRP 2480.0051
ALA 2490.0068
ARG 2500.0071
THR 2510.0071
GLY 2520.0081
PHE 2530.0068
SER 2540.0080
PRO 2550.0065
ALA 2560.0065
LYS 2570.0061
LYS 2580.0048
LEU 2590.0048
ASN 2600.0042
ALA 2610.0044
GLY 2620.0046
VAL 2630.0048
VAL 2640.0048
ARG 2650.0051
VAL 2660.0052
PHE 2670.0047
PHE 2680.0047
LEU 2690.0042
ASN 2700.0051
GLN 2710.0051
LYS 2720.0036
LYS 2730.0031
ALA 2740.0013
LYS 2750.0038
ASP 2760.0070
VAL 2770.0077
LEU 2780.0094
ARG 2790.0145
LYS 2800.0158
THR 2810.0176
SER 2820.0186
ARG 2830.0144
PRO 2840.0146
MET 2850.0085
VAL 2860.0079
ASP 2870.0058
LEU 2880.0047
THR 2890.0062
PHE 2900.0128
GLY 2910.0170
GLY 2920.0214

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elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.