CNRS Nantes University US2B US2B
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***  TLR_3_simulation  ***

<R2> analysis for 2608260340483950756

---  normal mode 17  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0617
THR 260.0108
LYS 270.0106
CYS 280.0104
THR 290.0116
VAL 300.0120
SER 310.0131
HIS 320.0136
GLU 330.0122
VAL 340.0114
ALA 350.0104
ASP 360.0101
CYS 370.0090
SER 380.0086
HIS 390.0083
LEU 400.0084
LYS 410.0072
LEU 420.0067
THR 430.0054
GLN 440.0054
VAL 450.0060
PRO 460.0074
ASP 470.0075
ASP 480.0091
LEU 490.0096
PRO 500.0105
THR 510.0098
ASN 520.0112
ILE 530.0107
THR 540.0108
VAL 550.0103
LEU 560.0088
ASN 570.0087
LEU 580.0073
THR 590.0073
HIS 600.0067
ASN 610.0061
GLN 620.0050
LEU 630.0042
ARG 640.0032
ARG 650.0032
LEU 660.0039
PRO 670.0035
ALA 680.0043
ALA 690.0040
ASN 700.0049
PHE 710.0058
THR 720.0059
ARG 730.0072
TYR 740.0080
SER 750.0085
GLN 760.0098
LEU 770.0093
THR 780.0105
SER 790.0098
LEU 800.0080
ASP 810.0077
VAL 820.0062
GLY 830.0063
PHE 840.0056
ASN 850.0045
THR 860.0034
ILE 870.0036
SER 880.0037
LYS 890.0045
LEU 900.0052
GLU 910.0052
PRO 920.0067
GLU 930.0062
LEU 940.0062
CYS 950.0078
GLN 960.0077
LYS 970.0069
LEU 980.0081
PRO 990.0095
MET 1000.0105
LEU 1010.0096
LYS 1020.0109
VAL 1030.0101
LEU 1040.0084
ASN 1050.0077
LEU 1060.0064
GLN 1070.0064
HIS 1080.0053
ASN 1090.0044
GLU 1100.0040
LEU 1110.0053
SER 1120.0058
GLN 1130.0069
LEU 1140.0079
SER 1150.0088
ASP 1160.0100
LYS 1170.0092
THR 1180.0081
PHE 1190.0091
ALA 1200.0102
PHE 1210.0099
CYS 1220.0100
THR 1230.0116
ASN 1240.0118
LEU 1250.0110
THR 1260.0118
GLU 1270.0107
LEU 1280.0094
HIS 1290.0084
LEU 1300.0074
MET 1310.0071
SER 1320.0059
ASN 1330.0057
SER 1340.0056
ILE 1350.0068
GLN 1360.0072
LYS 1370.0085
ILE 1380.0093
LYS 1390.0102
ASN 1400.0113
ASN 1410.0117
PRO 1420.0106
PHE 1430.0111
VAL 1440.0125
LYS 1450.0123
GLN 1460.0121
LYS 1470.0136
ASN 1480.0133
LEU 1490.0122
ILE 1500.0125
THR 1510.0114
LEU 1520.0105
ASP 1530.0094
LEU 1540.0087
SER 1550.0080
HIS 1560.0069
ASN 1570.0070
GLY 1580.0071
LEU 1590.0082
SER 1600.0086
SER 1610.0098
THR 1620.0103
LYS 1630.0111
LEU 1640.0112
GLY 1650.0122
THR 1660.0134
GLN 1670.0142
VAL 1680.0145
GLN 1690.0137
LEU 1700.0131
GLU 1710.0143
ASN 1720.0141
LEU 1730.0129
GLN 1740.0127
GLU 1750.0115
LEU 1760.0109
LEU 1770.0098
LEU 1780.0092
SER 1790.0084
ASN 1800.0073
ASN 1810.0077
LYS 1820.0077
ILE 1830.0084
GLN 1840.0083
ALA 1850.0090
LEU 1860.0098
LYS 1870.0108
SER 1880.0118
GLU 1890.0125
GLU 1900.0118
LEU 1910.0120
ASP 1920.0133
ILE 1930.0134
PHE 1940.0132
ALA 1950.0142
ASN 1960.0149
SER 1970.0140
SER 1980.0136
LEU 1990.0125
LYS 2000.0122
LYS 2010.0111
LEU 2020.0105
GLU 2030.0096
LEU 2040.0090
SER 2050.0081
SER 2060.0073
ASN 2070.0077
GLN 2080.0074
ILE 2090.0080
LYS 2100.0078
GLU 2110.0084
PHE 2120.0090
SER 2130.0099
PRO 2140.0103
GLY 2150.0111
CYS 2160.0111
PHE 2170.0110
HIS 2180.0119
ALA 2190.0127
ILE 2200.0127
GLY 2210.0137
ARG 2220.0131
LEU 2230.0120
PHE 2240.0117
GLY 2250.0107
LEU 2260.0097
PHE 2270.0090
LEU 2280.0082
ASN 2290.0075
ASN 2300.0068
VAL 2310.0072
GLN 2320.0065
LEU 2330.0064
GLY 2340.0055
PRO 2350.0051
SER 2360.0057
LEU 2370.0065
THR 2380.0063
GLU 2390.0062
LYS 2400.0072
LEU 2410.0078
CYS 2420.0076
LEU 2430.0080
GLU 2440.0091
LEU 2450.0092
ALA 2460.0092
ASN 2470.0102
THR 2480.0107
SER 2490.0112
ILE 2500.0104
ARG 2510.0099
ASN 2520.0095
LEU 2530.0085
SER 2540.0080
LEU 2550.0070
SER 2560.0067
ASN 2570.0062
SER 2580.0062
GLN 2590.0054
LEU 2600.0050
SER 2610.0044
THR 2620.0040
THR 2630.0041
SER 2640.0039
ASN 2650.0039
THR 2660.0043
THR 2670.0049
PHE 2680.0056
LEU 2690.0055
GLY 2700.0067
LEU 2710.0071
LYS 2720.0068
TRP 2730.0079
THR 2740.0086
ASN 2750.0092
LEU 2760.0083
THR 2770.0088
MET 2780.0085
LEU 2790.0073
ASP 2800.0072
LEU 2810.0059
SER 2820.0061
TYR 2830.0058
ASN 2840.0053
ASN 2850.0046
LEU 2860.0043
ASN 2870.0040
VAL 2880.0040
VAL 2890.0041
GLY 2900.0041
ASN 2910.0043
ASP 2920.0044
SER 2930.0043
PHE 2940.0051
ALA 2950.0052
TRP 2960.0053
LEU 2970.0063
PRO 2980.0070
GLN 2990.0080
LEU 3000.0078
GLU 3010.0086
TYR 3020.0084
PHE 3030.0072
PHE 3040.0069
LEU 3050.0058
GLU 3060.0061
TYR 3070.0056
ASN 3080.0048
ASN 3090.0043
ILE 3100.0043
GLN 3110.0044
HIS 3120.0049
LEU 3130.0053
PHE 3140.0055
SER 3150.0064
HIS 3160.0056
SER 3170.0050
LEU 3180.0057
HIS 3190.0058
GLY 3200.0062
LEU 3210.0067
PHE 3220.0077
ASN 3230.0084
VAL 3240.0081
ARG 3250.0093
TYR 3260.0087
LEU 3270.0075
ASN 3280.0072
LEU 3290.0063
LYS 3300.0065
ARG 3310.0055
SER 3320.0051
PHE 3330.0048
THR 3340.0045
LYS 3350.0045
GLN 3360.0046
SER 3370.0045
ILE 3380.0048
SER 3390.0053
LEU 3400.0056
ALA 3410.0055
SER 3420.0050
LEU 3430.0053
PRO 3440.0052
LYS 3450.0059
ILE 3460.0064
ASP 3470.0070
ASP 3480.0081
PHE 3490.0083
SER 3500.0072
PHE 3510.0077
GLN 3520.0084
TRP 3530.0077
LEU 3540.0082
LYS 3550.0093
CYS 3560.0096
LEU 3570.0092
GLU 3580.0101
HIS 3590.0095
LEU 3600.0085
ASN 3610.0079
MET 3620.0072
GLU 3630.0072
ASP 3640.0064
ASN 3650.0058
ASP 3660.0059
ILE 3670.0066
PRO 3680.0071
GLY 3690.0082
ILE 3700.0089
LYS 3710.0091
SER 3720.0102
ASN 3730.0098
MET 3740.0088
PHE 3750.0093
THR 3760.0099
GLY 3770.0101
LEU 3780.0100
ILE 3790.0111
ASN 3800.0110
LEU 3810.0105
LYS 3820.0111
TYR 3830.0103
LEU 3840.0095
SER 3850.0087
LEU 3860.0083
SER 3870.0079
ASN 3880.0071
SER 3890.0072
PHE 3900.0073
THR 3910.0070
SER 3920.0074
LEU 3930.0082
ARG 3940.0083
THR 3950.0090
LEU 3960.0096
THR 3970.0103
ASN 3980.0110
GLU 3990.0111
THR 4000.0105
PHE 4010.0107
VAL 4020.0115
SER 4030.0110
LEU 4040.0111
ALA 4050.0122
HIS 4060.0124
SER 4070.0118
PRO 4080.0123
LEU 4090.0114
HIS 4100.0116
ILE 4110.0107
LEU 4120.0101
ASN 4130.0092
LEU 4140.0088
THR 4150.0082
LYS 4160.0074
ASN 4170.0077
LYS 4180.0075
ILE 4190.0082
SER 4200.0082
LYS 4210.0087
ILE 4220.0094
GLU 4230.0101
SER 4240.0107
ASP 4250.0112
ALA 4260.0109
PHE 4270.0111
SER 4280.0121
TRP 4290.0122
LEU 4300.0118
GLY 4310.0128
HIS 4320.0127
LEU 4330.0117
GLU 4340.0114
VAL 4350.0105
LEU 4360.0101
ASP 4370.0093
LEU 4380.0088
GLY 4390.0081
LEU 4400.0073
ASN 4410.0076
GLU 4420.0073
ILE 4430.0078
GLY 4440.0075
GLN 4450.0080
GLU 4460.0077
LEU 4470.0082
THR 4480.0088
GLY 4490.0093
GLN 4500.0103
GLU 4510.0102
TRP 4520.0105
ARG 4530.0114
GLY 4540.0122
LEU 4550.0116
GLU 4560.0122
ASN 4570.0122
ILE 4580.0110
PHE 4590.0105
GLU 4600.0095
ILE 4610.0092
TYR 4620.0086
LEU 4630.0079
SER 4640.0072
TYR 4650.0066
ASN 4660.0069
LYS 4670.0064
TYR 4680.0063
LEU 4690.0067
GLN 4700.0066
LEU 4710.0065
THR 4720.0069
ARG 4730.0068
ASN 4740.0081
SER 4750.0081
PHE 4760.0086
ALA 4770.0092
LEU 4780.0101
VAL 4790.0100
PRO 4800.0099
SER 4810.0101
LEU 4820.0094
GLN 4830.0092
ARG 4840.0087
LEU 4850.0079
MET 4860.0077
LEU 4870.0067
ARG 4880.0063
ARG 4890.0057
VAL 4900.0059
ALA 4910.0051
LEU 4920.0053
LYS 4930.0050
ASN 4940.0049
VAL 4950.0047
ASP 4960.0038
SER 4970.0048
SER 4980.0048
PRO 4990.0053
SER 5000.0052
PRO 5010.0063
PHE 5020.0064
GLN 5030.0064
PRO 5040.0076
LEU 5050.0079
ARG 5060.0076
ASN 5070.0086
LEU 5080.0080
THR 5090.0083
ILE 5100.0079
LEU 5110.0069
ASP 5120.0068
LEU 5130.0057
SER 5140.0057
ASN 5150.0052
ASN 5160.0046
ASN 5170.0036
ILE 5180.0032
ALA 5190.0024
ASN 5200.0024
ILE 5210.0028
ASN 5220.0027
ASP 5230.0025
ASP 5240.0034
MET 5250.0041
LEU 5260.0046
GLU 5270.0045
GLY 5280.0055
LEU 5290.0062
GLU 5300.0066
LYS 5310.0075
LEU 5320.0071
GLU 5330.0079
ILE 5340.0077
LEU 5350.0065
ASP 5360.0067
LEU 5370.0054
GLN 5380.0061
HIS 5390.0056
ASN 5400.0042
ASN 5410.0037
LEU 5420.0036
ALA 5430.0043
ARG 5440.0038
LEU 5450.0032
TRP 5460.0045
LYS 5470.0053
HIS 5480.0059
ALA 5490.0061
ASN 5500.0047
PRO 5510.0049
GLY 5520.0045
GLY 5530.0044
PRO 5540.0038
ILE 5550.0028
TYR 5560.0031
PHE 5570.0032
LEU 5580.0043
LYS 5590.0038
GLY 5600.0044
LEU 5610.0054
SER 5620.0061
HIS 5630.0073
LEU 5640.0071
HIS 5650.0082
ILE 5660.0083
LEU 5670.0071
ASN 5680.0074
LEU 5690.0065
GLU 5700.0074
SER 5710.0069
ASN 5720.0056
GLY 5730.0061
PHE 5740.0063
ASP 5750.0072
GLU 5760.0070
ILE 5770.0065
PRO 5780.0060
VAL 5790.0066
GLU 5800.0054
VAL 5810.0051
PHE 5820.0059
LYS 5830.0054
ASP 5840.0051
LEU 5850.0062
PHE 5860.0069
GLU 5870.0078
LEU 5880.0079
LYS 5890.0093
ILE 5900.0094
ILE 5910.0086
ASP 5920.0089
LEU 5930.0084
GLY 5940.0095
LEU 5950.0093
ASN 5960.0087
ASN 5970.0091
LEU 5980.0093
ASN 5990.0107
THR 6000.0104
LEU 6010.0093
PRO 6020.0090
ALA 6030.0094
SER 6040.0086
VAL 6050.0078
PHE 6060.0082
ASN 6070.0080
ASN 6080.0071
GLN 6090.0080
VAL 6100.0086
SER 6110.0091
LEU 6120.0096
LYS 6130.0109
SER 6140.0110
LEU 6150.0106
ASN 6160.0108
LEU 6170.0108
GLN 6180.0120
LYS 6190.0122
ASN 6200.0113
LEU 6210.0121
ILE 6220.0124
THR 6230.0139
SER 6240.0136
VAL 6250.0129
GLU 6260.0125
LYS 6270.0119
LYS 6280.0108
VAL 6290.0101
PHE 6300.0107
GLY 6310.0109
PRO 6320.0097
ALA 6330.0099
PHE 6340.0113
ARG 6350.0111
ASN 6360.0110
LEU 6370.0117
THR 6380.0126
GLU 6390.0128
LEU 6400.0127
ASP 6410.0130
MET 6420.0131
ARG 6430.0144
PHE 6440.0148
ASN 6450.0142
PRO 6460.0153
PHE 6470.0156
ASP 6480.0163
CYS 6490.0177
THR 6500.0179
CYS 6510.0173
GLU 6520.0160
SER 6530.0152
ILE 6540.0155
ALA 6550.0160
TRP 6560.0142
PHE 6570.0143
VAL 6580.0157
ASN 6590.0152
TRP 6600.0140
ILE 6610.0148
ASN 6620.0153
GLU 6630.0136
THR 6640.0131
HIS 6650.0134
THR 6660.0135
ASN 6670.0145
ILE 6680.0149
PRO 6690.0160
GLU 6700.0172
LEU 6710.0171
SER 6720.0187
SER 6730.0189
HIS 6740.0172
TYR 6750.0168
LEU 6760.0179
CYS 6770.0180
ASN 6780.0180
THR 6790.0179
PRO 6800.0195
PRO 6810.0211
HIS 6820.0221
TYR 6830.0207
HIS 6840.0204
GLY 6850.0204
PHE 6860.0205
PRO 6870.0192
VAL 6880.0178
ARG 6890.0179
LEU 6900.0196
PHE 6910.0192
ASP 6920.0199
THR 6930.0186
SER 6940.0198
SER 6950.0203
CYS 6960.0186
GLU 10.0066
ALA 20.0067
ALA 30.0062
ALA 40.0054
LYS 50.0054
MET 60.0055
GLN 70.0048
ARG 80.0045
LEU 90.0051
VAL 100.0049
LEU 110.0045
LEU 120.0049
LEU 130.0055
ALA 140.0051
ILE 150.0054
SER 160.0060
LEU 170.0061
LEU 180.0061
LEU 190.0064
TYR 200.0067
GLN 210.0066
ASP 220.0067
LEU 230.0071
PRO 240.0074
VAL 250.0075
ARG 260.0051
SER 270.0058
GLU 280.0049
PHE 290.0055
GLU 300.0077
LEU 310.0096
ASP 320.0092
ARG 330.0106
ILE 340.0122
CYS 350.0132
GLY 360.0143
TYR 370.0150
GLY 380.0147
THR 390.0156
ALA 400.0143
ARG 410.0130
CYS 420.0118
ARG 430.0116
LYS 440.0107
LYS 450.0117
CYS 460.0133
ARG 470.0139
SER 480.0150
GLN 490.0153
GLU 500.0146
TYR 510.0147
ARG 520.0134
ILE 530.0138
GLY 540.0125
ARG 550.0112
CYS 560.0110
PRO 570.0100
ASN 580.0091
THR 590.0094
TYR 600.0102
ALA 610.0118
CYS 620.0126
CYS 630.0132
LEU 640.0140
ARG 650.0146
LYS 660.0168
TRP 670.0149
ASP 680.0121
GLU 690.0134
SER 700.0091
LEU 710.0089
LEU 720.0118
ASN 730.0081
ARG 740.0043
THR 750.0087
LYS 760.0075
PRO 770.0049
GLU 780.0030
ALA 790.0031
ALA 800.0047
ALA 810.0085
LYS 820.0092
LYS 830.0094
GLU 840.0105
MET 850.0108
ASN 860.0109
LEU 870.0103
SER 880.0105
VAL 890.0102
GLY 900.0105
LEU 910.0109
GLY 920.0112
GLY 930.0124
GLY 940.0125
SER 950.0124
ASN 960.0118
LEU 970.0115
SER 980.0116
VAL 990.0114
GLY 1000.0119
LEU 1010.0110
GLY 1020.0115
GLU 1030.0109
ILE 1040.0115
GLY 1050.0111
GLY 1060.0113
GLY 1070.0107
SER 1080.0099
LYS 1090.0097
LEU 1100.0090
LEU 1110.0096
ASP 1120.0098
ILE 1130.0098
ASN 1140.0103
LEU 1150.0101
GLY 1160.0110
ARG 1170.0109
GLY 1180.0113
GLY 1190.0106
GLY 1200.0103
SER 1210.0100
MET 1220.0092
VAL 1230.0092
ASP 1240.0090
LEU 1250.0088
THR 1260.0093
PHE 1270.0093
GLY 1280.0099
GLY 1290.0095
VAL 1300.0101
GLY 1310.0098
GLY 1320.0098
GLY 1330.0087
SER 1340.0091
THR 1350.0080
PHE 1360.0077
THR 1370.0070
PHE 1380.0064
PHE 1390.0060
PRO 1400.0055
LEU 1410.0056
VAL 1420.0050
ILE 1430.0054
GLY 1440.0051
GLY 1450.0057
GLY 1460.0071
SER 1470.0077
ASP 1480.0083
ALA 1490.0080
MET 1500.0074
TYR 1510.0075
LEU 1520.0077
GLY 1530.0081
PHE 1540.0085
ALA 1550.0091
ALA 1560.0097
GLY 1570.0091
GLY 1580.0094
GLY 1590.0081
SER 1600.0076
ALA 1610.0066
GLY 1620.0069
GLY 1630.0070
GLU 1640.0078
ASN 1650.0074
HIS 1660.0076
VAL 1670.0071
ALA 1680.0074
PHE 1690.0074
GLY 1700.0078
PRO 1710.0078
GLY 1720.0071
PRO 1730.0060
GLY 1740.0058
VAL 1750.0059
ASP 1760.0061
LEU 1770.0058
THR 1780.0060
PHE 1790.0059
GLY 1800.0060
GLY 1810.0060
VAL 1820.0053
GLN 1830.0056
PHE 1840.0052
ALA 1850.0056
MET 1860.0052
VAL 1870.0061
ASN 1880.0072
ASN 1890.0095
GLY 1900.0106
PRO 1910.0165
GLY 1920.0212
PRO 1930.0303
GLY 1940.0340
GLU 1950.0279
SER 1960.0303
PHE 1970.0277
THR 1980.0342
ALA 1990.0429
GLN 2000.0487
PRO 2010.0615
ALA 2020.0617
ASP 2030.0455
MET 2040.0476
GLN 2050.0529
ALA 2060.0380
GLY 2070.0328
ILE 2080.0222
LYS 2090.0174
GLY 2100.0099
PRO 2110.0051
GLY 2120.0065
PRO 2130.0078
GLY 2140.0080
GLY 2150.0050
SER 2160.0058
ILE 2170.0030
GLN 2180.0031
VAL 2190.0051
ILE 2200.0041
ASN 2210.0045
GLY 2220.0049
SER 2230.0046
THR 2240.0044
ILE 2250.0053
GLY 2260.0048
THR 2270.0053
GLY 2280.0050
SER 2290.0047
LYS 2300.0047
LYS 2310.0051
THR 2320.0062
ILE 2330.0067
LEU 2340.0088
ILE 2350.0102
TYR 2360.0134
SER 2370.0159
ILE 2380.0178
ILE 2390.0192
GLY 2400.0214
VAL 2410.0178
LYS 2420.0160
LYS 2430.0147
GLY 2440.0153
THR 2450.0154
LEU 2460.0173
ALA 2470.0172
TRP 2480.0155
ALA 2490.0158
ARG 2500.0142
THR 2510.0134
GLY 2520.0126
PHE 2530.0110
SER 2540.0108
PRO 2550.0088
ALA 2560.0086
LYS 2570.0082
LYS 2580.0072
LEU 2590.0061
ASN 2600.0051
ALA 2610.0056
GLY 2620.0058
VAL 2630.0061
VAL 2640.0069
ARG 2650.0080
VAL 2660.0087
PHE 2670.0103
PHE 2680.0104
LEU 2690.0116
ASN 2700.0136
GLN 2710.0196
LYS 2720.0192
LYS 2730.0130
ALA 2740.0158
LYS 2750.0222
ASP 2760.0210
VAL 2770.0169
LEU 2780.0224
ARG 2790.0299
LYS 2800.0278
THR 2810.0279
SER 2820.0310
ARG 2830.0256
PRO 2840.0278
MET 2850.0217
VAL 2860.0259
ASP 2870.0254
LEU 2880.0217
THR 2890.0252
PHE 2900.0315
GLY 2910.0411
GLY 2920.0432

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elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.