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***  TLR_3_simulation  ***

<R2> analysis for 2608260340483950756

---  normal mode 22  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0858
THR 260.0048
LYS 270.0021
CYS 280.0019
THR 290.0046
VAL 300.0061
SER 310.0089
HIS 320.0108
GLU 330.0091
VAL 340.0072
ALA 350.0046
ASP 360.0044
CYS 370.0024
SER 380.0048
HIS 390.0069
LEU 400.0057
LYS 410.0070
LEU 420.0055
THR 430.0073
GLN 440.0063
VAL 450.0045
PRO 460.0041
ASP 470.0063
ASP 480.0055
LEU 490.0052
PRO 500.0076
THR 510.0094
ASN 520.0101
ILE 530.0077
THR 540.0079
VAL 550.0058
LEU 560.0036
ASN 570.0028
LEU 580.0015
THR 590.0040
HIS 600.0062
ASN 610.0057
GLN 620.0073
LEU 630.0062
ARG 640.0081
ARG 650.0076
LEU 660.0065
PRO 670.0085
ALA 680.0091
ALA 690.0102
ASN 700.0080
PHE 710.0076
THR 720.0100
ARG 730.0095
TYR 740.0079
SER 750.0096
GLN 760.0094
LEU 770.0071
THR 780.0069
SER 790.0047
LEU 800.0025
ASP 810.0013
VAL 820.0014
GLY 830.0032
PHE 840.0056
ASN 850.0059
THR 860.0073
ILE 870.0065
SER 880.0079
LYS 890.0079
LEU 900.0065
GLU 910.0081
PRO 920.0084
GLU 930.0095
LEU 940.0076
CYS 950.0074
GLN 960.0099
LYS 970.0095
LEU 980.0080
PRO 990.0093
MET 1000.0086
LEU 1010.0059
LYS 1020.0053
VAL 1030.0036
LEU 1040.0018
ASN 1050.0005
LEU 1060.0020
GLN 1070.0032
HIS 1080.0052
ASN 1090.0056
GLU 1100.0070
LEU 1110.0054
SER 1120.0063
GLN 1130.0067
LEU 1140.0057
SER 1150.0066
ASP 1160.0067
LYS 1170.0076
THR 1180.0062
PHE 1190.0052
ALA 1200.0067
PHE 1210.0076
CYS 1220.0060
THR 1230.0067
ASN 1240.0064
LEU 1250.0044
THR 1260.0042
GLU 1270.0027
LEU 1280.0010
HIS 1290.0009
LEU 1300.0021
MET 1310.0034
SER 1320.0049
ASN 1330.0049
SER 1340.0060
ILE 1350.0051
GLN 1360.0053
LYS 1370.0050
ILE 1380.0042
LYS 1390.0051
ASN 1400.0052
ASN 1410.0045
PRO 1420.0043
PHE 1430.0032
VAL 1440.0042
LYS 1450.0051
GLN 1460.0040
LYS 1470.0046
ASN 1480.0047
LEU 1490.0032
ILE 1500.0033
THR 1510.0021
LEU 1520.0008
ASP 1530.0014
LEU 1540.0021
SER 1550.0033
HIS 1560.0044
ASN 1570.0044
GLY 1580.0049
LEU 1590.0039
SER 1600.0041
SER 1610.0033
THR 1620.0022
LYS 1630.0020
LEU 1640.0018
GLY 1650.0023
THR 1660.0029
GLN 1670.0027
VAL 1680.0022
GLN 1690.0024
LEU 1700.0022
GLU 1710.0028
ASN 1720.0033
LEU 1730.0021
GLN 1740.0028
GLU 1750.0023
LEU 1760.0016
LEU 1770.0022
LEU 1780.0025
SER 1790.0035
ASN 1800.0043
ASN 1810.0041
LYS 1820.0043
ILE 1830.0035
GLN 1840.0038
ALA 1850.0031
LEU 1860.0030
LYS 1870.0026
SER 1880.0020
GLU 1890.0015
GLU 1900.0016
LEU 1910.0013
ASP 1920.0007
ILE 1930.0005
PHE 1940.0010
ALA 1950.0015
ASN 1960.0021
SER 1970.0019
SER 1980.0026
LEU 1990.0024
LYS 2000.0031
LYS 2010.0028
LEU 2020.0026
GLU 2030.0029
LEU 2040.0032
SER 2050.0037
SER 2060.0039
ASN 2070.0037
GLN 2080.0040
ILE 2090.0037
LYS 2100.0039
GLU 2110.0039
PHE 2120.0036
SER 2130.0035
PRO 2140.0036
GLY 2150.0032
CYS 2160.0029
PHE 2170.0030
HIS 2180.0030
ALA 2190.0021
ILE 2200.0020
GLY 2210.0023
ARG 2220.0028
LEU 2230.0029
PHE 2240.0034
GLY 2250.0034
LEU 2260.0034
PHE 2270.0033
LEU 2280.0036
ASN 2290.0036
ASN 2300.0038
VAL 2310.0038
GLN 2320.0039
LEU 2330.0041
GLY 2340.0042
PRO 2350.0043
SER 2360.0048
LEU 2370.0044
THR 2380.0042
GLU 2390.0046
LYS 2400.0045
LEU 2410.0042
CYS 2420.0044
LEU 2430.0046
GLU 2440.0042
LEU 2450.0040
ALA 2460.0046
ASN 2470.0044
THR 2480.0040
SER 2490.0039
ILE 2500.0038
ARG 2510.0038
ASN 2520.0035
LEU 2530.0036
SER 2540.0034
LEU 2550.0037
SER 2560.0033
ASN 2570.0033
SER 2580.0036
GLN 2590.0036
LEU 2600.0037
SER 2610.0034
THR 2620.0036
THR 2630.0037
SER 2640.0041
ASN 2650.0044
THR 2660.0050
THR 2670.0045
PHE 2680.0044
LEU 2690.0049
GLY 2700.0049
LEU 2710.0046
LYS 2720.0049
TRP 2730.0050
THR 2740.0046
ASN 2750.0044
LEU 2760.0042
THR 2770.0039
MET 2780.0035
LEU 2790.0035
ASP 2800.0032
LEU 2810.0032
SER 2820.0029
TYR 2830.0028
ASN 2840.0030
ASN 2850.0028
LEU 2860.0028
ASN 2870.0026
VAL 2880.0028
VAL 2890.0029
GLY 2900.0032
ASN 2910.0034
ASP 2920.0038
SER 2930.0038
PHE 2940.0038
ALA 2950.0041
TRP 2960.0045
LEU 2970.0042
PRO 2980.0043
GLN 2990.0043
LEU 3000.0038
GLU 3010.0035
TYR 3020.0031
PHE 3030.0029
PHE 3040.0025
LEU 3050.0023
GLU 3060.0022
TYR 3070.0020
ASN 3080.0020
ASN 3090.0018
ILE 3100.0017
GLN 3110.0017
HIS 3120.0015
LEU 3130.0015
PHE 3140.0018
SER 3150.0020
HIS 3160.0028
SER 3170.0027
LEU 3180.0027
HIS 3190.0033
GLY 3200.0038
LEU 3210.0034
PHE 3220.0037
ASN 3230.0039
VAL 3240.0033
ARG 3250.0032
TYR 3260.0026
LEU 3270.0022
ASN 3280.0019
LEU 3290.0015
LYS 3300.0014
ARG 3310.0013
SER 3320.0015
PHE 3330.0012
THR 3340.0014
LYS 3350.0016
GLN 3360.0022
SER 3370.0030
ILE 3380.0037
SER 3390.0045
LEU 3400.0041
ALA 3410.0033
SER 3420.0026
LEU 3430.0019
PRO 3440.0012
LYS 3450.0010
ILE 3460.0009
ASP 3470.0011
ASP 3480.0014
PHE 3490.0020
SER 3500.0019
PHE 3510.0021
GLN 3520.0027
TRP 3530.0031
LEU 3540.0030
LYS 3550.0036
CYS 3560.0037
LEU 3570.0030
GLU 3580.0031
HIS 3590.0025
LEU 3600.0019
ASN 3610.0018
MET 3620.0015
GLU 3630.0014
ASP 3640.0014
ASN 3650.0014
ASP 3660.0017
ILE 3670.0016
PRO 3680.0020
GLY 3690.0022
ILE 3700.0023
LYS 3710.0020
SER 3720.0025
ASN 3730.0023
MET 3740.0019
PHE 3750.0024
THR 3760.0028
GLY 3770.0032
LEU 3780.0031
ILE 3790.0039
ASN 3800.0038
LEU 3810.0032
LYS 3820.0034
TYR 3830.0029
LEU 3840.0025
SER 3850.0023
LEU 3860.0024
SER 3870.0025
ASN 3880.0024
SER 3890.0021
PHE 3900.0023
THR 3910.0026
SER 3920.0031
LEU 3930.0032
ARG 3940.0038
THR 3950.0042
LEU 3960.0041
THR 3970.0043
ASN 3980.0046
GLU 3990.0041
THR 4000.0037
PHE 4010.0036
VAL 4020.0037
SER 4030.0033
LEU 4040.0035
ALA 4050.0042
HIS 4060.0042
SER 4070.0038
PRO 4080.0042
LEU 4090.0037
HIS 4100.0038
ILE 4110.0036
LEU 4120.0036
ASN 4130.0034
LEU 4140.0035
THR 4150.0036
LYS 4160.0035
ASN 4170.0034
LYS 4180.0039
ILE 4190.0041
SER 4200.0046
LYS 4210.0048
ILE 4220.0048
GLU 4230.0050
SER 4240.0053
ASP 4250.0052
ALA 4260.0047
PHE 4270.0046
SER 4280.0050
TRP 4290.0046
LEU 4300.0045
GLY 4310.0050
HIS 4320.0046
LEU 4330.0044
GLU 4340.0045
VAL 4350.0043
LEU 4360.0045
ASP 4370.0044
LEU 4380.0046
GLY 4390.0046
LEU 4400.0045
ASN 4410.0045
GLU 4420.0047
ILE 4430.0049
GLY 4440.0052
GLN 4450.0054
GLU 4460.0056
LEU 4470.0055
THR 4480.0057
GLY 4490.0056
GLN 4500.0056
GLU 4510.0053
TRP 4520.0053
ARG 4530.0054
GLY 4540.0053
LEU 4550.0051
GLU 4560.0054
ASN 4570.0050
ILE 4580.0049
PHE 4590.0049
GLU 4600.0049
ILE 4610.0053
TYR 4620.0053
LEU 4630.0053
SER 4640.0053
TYR 4650.0053
ASN 4660.0051
LYS 4670.0051
TYR 4680.0053
LEU 4690.0053
GLN 4700.0055
LEU 4710.0054
THR 4720.0054
ARG 4730.0054
ASN 4740.0054
SER 4750.0054
PHE 4760.0055
ALA 4770.0056
LEU 4780.0055
VAL 4790.0054
PRO 4800.0055
SER 4810.0057
LEU 4820.0057
GLN 4830.0059
ARG 4840.0059
LEU 4850.0058
MET 4860.0058
LEU 4870.0057
ARG 4880.0058
ARG 4890.0058
VAL 4900.0056
ALA 4910.0054
LEU 4920.0054
LYS 4930.0053
ASN 4940.0052
VAL 4950.0052
ASP 4960.0047
SER 4970.0047
SER 4980.0046
PRO 4990.0047
SER 5000.0048
PRO 5010.0048
PHE 5020.0051
GLN 5030.0050
PRO 5040.0051
LEU 5050.0054
ARG 5060.0054
ASN 5070.0063
LEU 5080.0060
THR 5090.0066
ILE 5100.0066
LEU 5110.0061
ASP 5120.0062
LEU 5130.0059
SER 5140.0060
ASN 5150.0060
ASN 5160.0057
ASN 5170.0053
ILE 5180.0050
ALA 5190.0045
ASN 5200.0043
ILE 5210.0042
ASN 5220.0040
ASP 5230.0040
ASP 5240.0043
MET 5250.0046
LEU 5260.0047
GLU 5270.0046
GLY 5280.0053
LEU 5290.0056
GLU 5300.0061
LYS 5310.0073
LEU 5320.0069
GLU 5330.0074
ILE 5340.0073
LEU 5350.0065
ASP 5360.0065
LEU 5370.0060
GLN 5380.0062
HIS 5390.0061
ASN 5400.0056
ASN 5410.0049
LEU 5420.0044
ALA 5430.0040
ARG 5440.0034
LEU 5450.0033
TRP 5460.0030
LYS 5470.0025
HIS 5480.0017
ALA 5490.0017
ASN 5500.0020
PRO 5510.0016
GLY 5520.0016
GLY 5530.0018
PRO 5540.0025
ILE 5550.0033
TYR 5560.0036
PHE 5570.0043
LEU 5580.0048
LYS 5590.0047
GLY 5600.0055
LEU 5610.0060
SER 5620.0066
HIS 5630.0073
LEU 5640.0068
HIS 5650.0073
ILE 5660.0072
LEU 5670.0064
ASN 5680.0066
LEU 5690.0058
GLU 5700.0062
SER 5710.0061
ASN 5720.0053
GLY 5730.0049
PHE 5740.0041
ASP 5750.0036
GLU 5760.0028
ILE 5770.0028
PRO 5780.0023
VAL 5790.0024
GLU 5800.0031
VAL 5810.0036
PHE 5820.0043
LYS 5830.0044
ASP 5840.0053
LEU 5850.0057
PHE 5860.0063
GLU 5870.0073
LEU 5880.0067
LYS 5890.0072
ILE 5900.0071
ILE 5910.0062
ASP 5920.0065
LEU 5930.0056
GLY 5940.0063
LEU 5950.0066
ASN 5960.0056
ASN 5970.0050
LEU 5980.0041
ASN 5990.0038
THR 6000.0026
LEU 6010.0023
PRO 6020.0012
ALA 6030.0011
SER 6040.0022
VAL 6050.0027
PHE 6060.0036
ASN 6070.0037
ASN 6080.0047
GLN 6090.0051
VAL 6100.0058
SER 6110.0070
LEU 6120.0064
LYS 6130.0073
SER 6140.0072
LEU 6150.0062
ASN 6160.0067
LEU 6170.0059
GLN 6180.0071
LYS 6190.0073
ASN 6200.0061
LEU 6210.0057
ILE 6220.0049
THR 6230.0052
SER 6240.0040
VAL 6250.0035
GLU 6260.0021
LYS 6270.0017
LYS 6280.0009
VAL 6290.0019
PHE 6300.0030
GLY 6310.0028
PRO 6320.0038
ALA 6330.0045
PHE 6340.0047
ARG 6350.0050
ASN 6360.0063
LEU 6370.0066
THR 6380.0080
GLU 6390.0080
LEU 6400.0070
ASP 6410.0075
MET 6420.0067
ARG 6430.0080
PHE 6440.0083
ASN 6450.0071
PRO 6460.0073
PHE 6470.0066
ASP 6480.0064
CYS 6490.0067
THR 6500.0062
CYS 6510.0050
GLU 6520.0042
SER 6530.0042
ILE 6540.0046
ALA 6550.0041
TRP 6560.0031
PHE 6570.0043
VAL 6580.0052
ASN 6590.0042
TRP 6600.0045
ILE 6610.0059
ASN 6620.0057
GLU 6630.0052
THR 6640.0061
HIS 6650.0073
THR 6660.0075
ASN 6670.0087
ILE 6680.0084
PRO 6690.0098
GLU 6700.0102
LEU 6710.0091
SER 6720.0099
SER 6730.0108
HIS 6740.0098
TYR 6750.0085
LEU 6760.0090
CYS 6770.0084
ASN 6780.0088
THR 6790.0082
PRO 6800.0089
PRO 6810.0106
HIS 6820.0107
TYR 6830.0097
HIS 6840.0104
GLY 6850.0109
PHE 6860.0101
PRO 6870.0092
VAL 6880.0076
ARG 6890.0075
LEU 6900.0082
PHE 6910.0073
ASP 6920.0069
THR 6930.0053
SER 6940.0054
SER 6950.0061
CYS 6960.0049
GLU 10.0049
ALA 20.0053
ALA 30.0049
ALA 40.0039
LYS 50.0040
MET 60.0042
GLN 70.0034
ARG 80.0028
LEU 90.0034
VAL 100.0032
LEU 110.0022
LEU 120.0024
LEU 130.0029
ALA 140.0022
ILE 150.0017
SER 160.0027
LEU 170.0033
LEU 180.0021
LEU 190.0035
TYR 200.0049
GLN 210.0052
ASP 220.0055
LEU 230.0080
PRO 240.0100
VAL 250.0105
ARG 260.0156
SER 270.0180
GLU 280.0167
PHE 290.0198
GLU 300.0214
LEU 310.0198
ASP 320.0168
ARG 330.0174
ILE 340.0185
CYS 350.0168
GLY 360.0181
TYR 370.0215
GLY 380.0211
THR 390.0192
ALA 400.0161
ARG 410.0151
CYS 420.0132
ARG 430.0111
LYS 440.0087
LYS 450.0070
CYS 460.0081
ARG 470.0079
SER 480.0070
GLN 490.0094
GLU 500.0101
TYR 510.0101
ARG 520.0098
ILE 530.0124
GLY 540.0116
ARG 550.0107
CYS 560.0123
PRO 570.0128
ASN 580.0117
THR 590.0090
TYR 600.0094
ALA 610.0097
CYS 620.0122
CYS 630.0111
LEU 640.0128
ARG 650.0119
LYS 660.0123
TRP 670.0103
ASP 680.0082
GLU 690.0074
SER 700.0049
LEU 710.0036
LEU 720.0059
ASN 730.0055
ARG 740.0041
THR 750.0061
LYS 760.0100
PRO 770.0131
GLU 780.0149
ALA 790.0198
ALA 800.0196
ALA 810.0226
LYS 820.0214
LYS 830.0189
GLU 840.0174
MET 850.0150
ASN 860.0159
LEU 870.0125
SER 880.0140
VAL 890.0117
GLY 900.0128
LEU 910.0134
GLY 920.0140
GLY 930.0191
GLY 940.0216
SER 950.0209
ASN 960.0189
LEU 970.0172
SER 980.0177
VAL 990.0152
GLY 1000.0167
LEU 1010.0149
GLY 1020.0197
GLU 1030.0217
ILE 1040.0226
GLY 1050.0248
GLY 1060.0203
GLY 1070.0129
SER 1080.0058
LYS 1090.0041
LEU 1100.0055
LEU 1110.0082
ASP 1120.0123
ILE 1130.0119
ASN 1140.0164
LEU 1150.0149
GLY 1160.0181
ARG 1170.0188
GLY 1180.0163
GLY 1190.0124
GLY 1200.0079
SER 1210.0076
MET 1220.0041
VAL 1230.0053
ASP 1240.0069
LEU 1250.0062
THR 1260.0104
PHE 1270.0097
GLY 1280.0138
GLY 1290.0140
VAL 1300.0131
GLY 1310.0079
GLY 1320.0054
GLY 1330.0068
SER 1340.0050
THR 1350.0069
PHE 1360.0070
THR 1370.0112
PHE 1380.0115
PHE 1390.0161
PRO 1400.0169
LEU 1410.0183
VAL 1420.0217
ILE 1430.0206
GLY 1440.0251
GLY 1450.0234
GLY 1460.0227
SER 1470.0211
ASP 1480.0165
ALA 1490.0165
MET 1500.0124
TYR 1510.0119
LEU 1520.0094
GLY 1530.0109
PHE 1540.0090
ALA 1550.0109
ALA 1560.0056
GLY 1570.0073
GLY 1580.0078
GLY 1590.0085
SER 1600.0084
ALA 1610.0124
GLY 1620.0134
GLY 1630.0160
GLU 1640.0148
ASN 1650.0130
HIS 1660.0111
VAL 1670.0079
ALA 1680.0077
PHE 1690.0062
GLY 1700.0079
PRO 1710.0086
GLY 1720.0154
PRO 1730.0215
GLY 1740.0208
VAL 1750.0157
ASP 1760.0168
LEU 1770.0167
THR 1780.0189
PHE 1790.0197
GLY 1800.0242
GLY 1810.0301
VAL 1820.0310
GLN 1830.0286
PHE 1840.0284
ALA 1850.0300
MET 1860.0306
VAL 1870.0392
ASN 1880.0406
ASN 1890.0521
GLY 1900.0545
PRO 1910.0535
GLY 1920.0521
PRO 1930.0405
GLY 1940.0241
GLU 1950.0218
SER 1960.0474
PHE 1970.0307
THR 1980.0561
ALA 1990.0496
GLN 2000.0468
PRO 2010.0523
ALA 2020.0295
ASP 2030.0143
MET 2040.0457
GLN 2050.0476
ALA 2060.0806
GLY 2070.0858
ILE 2080.0638
LYS 2090.0637
GLY 2100.0531
PRO 2110.0302
GLY 2120.0183
PRO 2130.0088
GLY 2140.0100
GLY 2150.0225
SER 2160.0249
ILE 2170.0221
GLN 2180.0172
VAL 2190.0149
ILE 2200.0117
ASN 2210.0105
GLY 2220.0112
SER 2230.0095
THR 2240.0094
ILE 2250.0133
GLY 2260.0134
THR 2270.0191
GLY 2280.0225
SER 2290.0268
LYS 2300.0232
LYS 2310.0197
THR 2320.0177
ILE 2330.0167
LEU 2340.0138
ILE 2350.0156
TYR 2360.0151
SER 2370.0145
ILE 2380.0157
ILE 2390.0155
GLY 2400.0168
VAL 2410.0172
LYS 2420.0182
LYS 2430.0163
GLY 2440.0181
THR 2450.0208
LEU 2460.0208
ALA 2470.0189
TRP 2480.0167
ALA 2490.0153
ARG 2500.0139
THR 2510.0112
GLY 2520.0117
PHE 2530.0129
SER 2540.0143
PRO 2550.0161
ALA 2560.0185
LYS 2570.0215
LYS 2580.0239
LEU 2590.0241
ASN 2600.0273
ALA 2610.0257
GLY 2620.0209
VAL 2630.0204
VAL 2640.0139
ARG 2650.0126
VAL 2660.0110
PHE 2670.0100
PHE 2680.0099
LEU 2690.0117
ASN 2700.0144
GLN 2710.0150
LYS 2720.0158
LYS 2730.0139
ALA 2740.0120
LYS 2750.0125
ASP 2760.0114
VAL 2770.0123
LEU 2780.0094
ARG 2790.0083
LYS 2800.0112
THR 2810.0145
SER 2820.0143
ARG 2830.0163
PRO 2840.0175
MET 2850.0162
VAL 2860.0183
ASP 2870.0144
LEU 2880.0127
THR 2890.0095
PHE 2900.0122
GLY 2910.0111
GLY 2920.0122

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.