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***  TLR_3_simulation  ***

<R2> analysis for 2608260340483950756

---  normal mode 26  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0762
THR 260.0080
LYS 270.0065
CYS 280.0047
THR 290.0059
VAL 300.0052
SER 310.0070
HIS 320.0071
GLU 330.0043
VAL 340.0047
ALA 350.0028
ASP 360.0037
CYS 370.0024
SER 380.0027
HIS 390.0031
LEU 400.0036
LYS 410.0026
LEU 420.0023
THR 430.0029
GLN 440.0028
VAL 450.0020
PRO 460.0021
ASP 470.0027
ASP 480.0026
LEU 490.0013
PRO 500.0008
THR 510.0018
ASN 520.0023
ILE 530.0025
THR 540.0039
VAL 550.0038
LEU 560.0025
ASN 570.0026
LEU 580.0017
THR 590.0021
HIS 600.0014
ASN 610.0013
GLN 620.0018
LEU 630.0021
ARG 640.0029
ARG 650.0032
LEU 660.0031
PRO 670.0038
ALA 680.0042
ALA 690.0041
ASN 700.0031
PHE 710.0035
THR 720.0042
ARG 730.0032
TYR 740.0029
SER 750.0042
GLN 760.0042
LEU 770.0041
THR 780.0046
SER 790.0042
LEU 800.0036
ASP 810.0033
VAL 820.0029
GLY 830.0029
PHE 840.0022
ASN 850.0022
THR 860.0024
ILE 870.0028
SER 880.0033
LYS 890.0037
LEU 900.0038
GLU 910.0040
PRO 920.0046
GLU 930.0048
LEU 940.0043
CYS 950.0047
GLN 960.0054
LYS 970.0049
LEU 980.0047
PRO 990.0054
MET 1000.0053
LEU 1010.0048
LYS 1020.0048
VAL 1030.0044
LEU 1040.0041
ASN 1050.0038
LEU 1060.0033
GLN 1070.0031
HIS 1080.0028
ASN 1090.0028
GLU 1100.0028
LEU 1110.0031
SER 1120.0027
GLN 1130.0027
LEU 1140.0030
SER 1150.0030
ASP 1160.0035
LYS 1170.0038
THR 1180.0038
PHE 1190.0040
ALA 1200.0043
PHE 1210.0049
CYS 1220.0047
THR 1230.0051
ASN 1240.0051
LEU 1250.0047
THR 1260.0046
GLU 1270.0043
LEU 1280.0039
HIS 1290.0036
LEU 1300.0032
MET 1310.0031
SER 1320.0028
ASN 1330.0027
SER 1340.0024
ILE 1350.0024
GLN 1360.0018
LYS 1370.0018
ILE 1380.0021
LYS 1390.0019
ASN 1400.0021
ASN 1410.0027
PRO 1420.0031
PHE 1430.0035
VAL 1440.0035
LYS 1450.0040
GLN 1460.0040
LYS 1470.0041
ASN 1480.0046
LEU 1490.0044
ILE 1500.0047
THR 1510.0041
LEU 1520.0036
ASP 1530.0035
LEU 1540.0029
SER 1550.0029
HIS 1560.0027
ASN 1570.0023
GLY 1580.0019
LEU 1590.0020
SER 1600.0018
SER 1610.0021
THR 1620.0026
LYS 1630.0023
LEU 1640.0025
GLY 1650.0023
THR 1660.0019
GLN 1670.0023
VAL 1680.0029
GLN 1690.0032
LEU 1700.0038
GLU 1710.0038
ASN 1720.0045
LEU 1730.0042
GLN 1740.0047
GLU 1750.0044
LEU 1760.0035
LEU 1770.0034
LEU 1780.0028
SER 1790.0030
ASN 1800.0026
ASN 1810.0022
LYS 1820.0019
ILE 1830.0023
GLN 1840.0024
ALA 1850.0028
LEU 1860.0032
LYS 1870.0033
SER 1880.0038
GLU 1890.0032
GLU 1900.0029
LEU 1910.0032
ASP 1920.0033
ILE 1930.0032
PHE 1940.0038
ALA 1950.0042
ASN 1960.0043
SER 1970.0044
SER 1980.0050
LEU 1990.0048
LYS 2000.0054
LYS 2010.0047
LEU 2020.0041
GLU 2030.0037
LEU 2040.0032
SER 2050.0032
SER 2060.0026
ASN 2070.0025
GLN 2080.0024
ILE 2090.0029
LYS 2100.0030
GLU 2110.0036
PHE 2120.0040
SER 2130.0042
PRO 2140.0048
GLY 2150.0050
CYS 2160.0043
PHE 2170.0047
HIS 2180.0052
ALA 2190.0046
ILE 2200.0048
GLY 2210.0053
ARG 2220.0056
LEU 2230.0054
PHE 2240.0058
GLY 2250.0054
LEU 2260.0047
PHE 2270.0041
LEU 2280.0035
ASN 2290.0032
ASN 2300.0025
VAL 2310.0027
GLN 2320.0025
LEU 2330.0031
GLY 2340.0031
PRO 2350.0036
SER 2360.0040
LEU 2370.0039
THR 2380.0040
GLU 2390.0047
LYS 2400.0049
LEU 2410.0047
CYS 2420.0053
LEU 2430.0058
GLU 2440.0055
LEU 2450.0057
ALA 2460.0065
ASN 2470.0071
THR 2480.0067
SER 2490.0069
ILE 2500.0062
ARG 2510.0065
ASN 2520.0058
LEU 2530.0050
SER 2540.0043
LEU 2550.0037
SER 2560.0030
ASN 2570.0022
SER 2580.0025
GLN 2590.0020
LEU 2600.0025
SER 2610.0019
THR 2620.0025
THR 2630.0031
SER 2640.0039
ASN 2650.0047
THR 2660.0053
THR 2670.0046
PHE 2680.0051
LEU 2690.0059
GLY 2700.0064
LEU 2710.0062
LYS 2720.0070
TRP 2730.0076
THR 2740.0072
ASN 2750.0074
LEU 2760.0067
THR 2770.0066
MET 2780.0058
LEU 2790.0049
ASP 2800.0041
LEU 2810.0032
SER 2820.0027
TYR 2830.0020
ASN 2840.0014
ASN 2850.0004
LEU 2860.0009
ASN 2870.0009
VAL 2880.0017
VAL 2890.0021
GLY 2900.0030
ASN 2910.0034
ASP 2920.0042
SER 2930.0041
PHE 2940.0044
ALA 2950.0052
TRP 2960.0060
LEU 2970.0060
PRO 2980.0066
GLN 2990.0070
LEU 3000.0061
GLU 3010.0061
TYR 3020.0056
PHE 3030.0045
PHE 3040.0039
LEU 3050.0028
GLU 3060.0030
TYR 3070.0025
ASN 3080.0013
ASN 3090.0009
ILE 3100.0003
GLN 3110.0011
HIS 3120.0009
LEU 3130.0005
PHE 3140.0014
SER 3150.0017
HIS 3160.0028
SER 3170.0025
LEU 3180.0030
HIS 3190.0038
GLY 3200.0049
LEU 3210.0047
PHE 3220.0053
ASN 3230.0061
VAL 3240.0054
ARG 3250.0059
TYR 3260.0054
LEU 3270.0042
ASN 3280.0041
LEU 3290.0031
LYS 3300.0037
ARG 3310.0032
SER 3320.0021
PHE 3330.0017
THR 3340.0020
LYS 3350.0032
GLN 3360.0041
SER 3370.0046
ILE 3380.0056
SER 3390.0062
LEU 3400.0053
ALA 3410.0046
SER 3420.0035
LEU 3430.0030
PRO 3440.0018
LYS 3450.0013
ILE 3460.0008
ASP 3470.0005
ASP 3480.0004
PHE 3490.0010
SER 3500.0013
PHE 3510.0022
GLN 3520.0026
TRP 3530.0034
LEU 3540.0039
LYS 3550.0046
CYS 3560.0053
LEU 3570.0048
GLU 3580.0056
HIS 3590.0055
LEU 3600.0045
ASN 3610.0046
MET 3620.0039
GLU 3630.0045
ASP 3640.0045
ASN 3650.0037
ASP 3660.0035
ILE 3670.0031
PRO 3680.0035
GLY 3690.0036
ILE 3700.0032
LYS 3710.0025
SER 3720.0024
ASN 3730.0016
MET 3740.0019
PHE 3750.0026
THR 3760.0022
GLY 3770.0027
LEU 3780.0035
ILE 3790.0041
ASN 3800.0050
LEU 3810.0047
LYS 3820.0056
TYR 3830.0057
LEU 3840.0050
SER 3850.0052
LEU 3860.0049
SER 3870.0055
ASN 3880.0052
SER 3890.0044
PHE 3900.0044
THR 3910.0045
SER 3920.0048
LEU 3930.0048
ARG 3940.0053
THR 3950.0052
LEU 3960.0052
THR 3970.0050
ASN 3980.0049
GLU 3990.0043
THR 4000.0043
PHE 4010.0042
VAL 4020.0036
SER 4030.0031
LEU 4040.0038
ALA 4050.0039
HIS 4060.0036
SER 4070.0041
PRO 4080.0049
LEU 4090.0051
HIS 4100.0058
ILE 4110.0060
LEU 4120.0057
ASN 4130.0060
LEU 4140.0058
THR 4150.0063
LYS 4160.0060
ASN 4170.0056
LYS 4180.0059
ILE 4190.0059
SER 4200.0061
LYS 4210.0060
ILE 4220.0059
GLU 4230.0058
SER 4240.0060
ASP 4250.0056
ALA 4260.0054
PHE 4270.0054
SER 4280.0053
TRP 4290.0048
LEU 4300.0051
GLY 4310.0052
HIS 4320.0054
LEU 4330.0057
GLU 4340.0062
VAL 4350.0064
LEU 4360.0063
ASP 4370.0065
LEU 4380.0065
GLY 4390.0069
LEU 4400.0070
ASN 4410.0067
GLU 4420.0067
ILE 4430.0066
GLY 4440.0068
GLN 4450.0066
GLU 4460.0066
LEU 4470.0065
THR 4480.0065
GLY 4490.0064
GLN 4500.0063
GLU 4510.0061
TRP 4520.0062
ARG 4530.0060
GLY 4540.0058
LEU 4550.0059
GLU 4560.0057
ASN 4570.0058
ILE 4580.0060
PHE 4590.0062
GLU 4600.0063
ILE 4610.0066
TYR 4620.0069
LEU 4630.0069
SER 4640.0073
TYR 4650.0074
ASN 4660.0071
LYS 4670.0071
TYR 4680.0070
LEU 4690.0068
GLN 4700.0067
LEU 4710.0066
THR 4720.0065
ARG 4730.0064
ASN 4740.0065
SER 4750.0066
PHE 4760.0066
ALA 4770.0065
LEU 4780.0065
VAL 4790.0065
PRO 4800.0065
SER 4810.0062
LEU 4820.0064
GLN 4830.0065
ARG 4840.0067
LEU 4850.0067
MET 4860.0070
LEU 4870.0071
ARG 4880.0073
ARG 4890.0075
VAL 4900.0073
ALA 4910.0072
LEU 4920.0070
LYS 4930.0069
ASN 4940.0066
VAL 4950.0066
ASP 4960.0060
SER 4970.0060
SER 4980.0060
PRO 4990.0061
SER 5000.0061
PRO 5010.0064
PHE 5020.0064
GLN 5030.0062
PRO 5040.0063
LEU 5050.0064
ARG 5060.0063
ASN 5070.0063
LEU 5080.0064
THR 5090.0065
ILE 5100.0066
LEU 5110.0067
ASP 5120.0069
LEU 5130.0069
SER 5140.0071
ASN 5150.0074
ASN 5160.0074
ASN 5170.0070
ILE 5180.0066
ALA 5190.0062
ASN 5200.0059
ILE 5210.0056
ASN 5220.0054
ASP 5230.0052
ASP 5240.0054
MET 5250.0057
LEU 5260.0055
GLU 5270.0054
GLY 5280.0055
LEU 5290.0057
GLU 5300.0057
LYS 5310.0057
LEU 5320.0058
GLU 5330.0060
ILE 5340.0063
LEU 5350.0061
ASP 5360.0066
LEU 5370.0064
GLN 5380.0066
HIS 5390.0069
ASN 5400.0067
ASN 5410.0064
LEU 5420.0058
ALA 5430.0055
ARG 5440.0055
LEU 5450.0052
TRP 5460.0047
LYS 5470.0048
HIS 5480.0046
ALA 5490.0052
ASN 5500.0052
PRO 5510.0054
GLY 5520.0049
GLY 5530.0046
PRO 5540.0045
ILE 5550.0046
TYR 5560.0043
PHE 5570.0047
LEU 5580.0047
LYS 5590.0044
GLY 5600.0045
LEU 5610.0043
SER 5620.0043
HIS 5630.0049
LEU 5640.0050
HIS 5650.0054
ILE 5660.0060
LEU 5670.0057
ASN 5680.0061
LEU 5690.0058
GLU 5700.0062
SER 5710.0064
ASN 5720.0061
GLY 5730.0058
PHE 5740.0052
ASP 5750.0049
GLU 5760.0044
ILE 5770.0042
PRO 5780.0039
VAL 5790.0037
GLU 5800.0038
VAL 5810.0040
PHE 5820.0039
LYS 5830.0037
ASP 5840.0038
LEU 5850.0041
PHE 5860.0038
GLU 5870.0044
LEU 5880.0047
LYS 5890.0054
ILE 5900.0059
ILE 5910.0055
ASP 5920.0058
LEU 5930.0053
GLY 5940.0057
LEU 5950.0060
ASN 5960.0055
ASN 5970.0050
LEU 5980.0044
ASN 5990.0039
THR 6000.0036
LEU 6010.0037
PRO 6020.0036
ALA 6030.0036
SER 6040.0037
VAL 6050.0038
PHE 6060.0040
ASN 6070.0037
ASN 6080.0037
GLN 6090.0039
VAL 6100.0040
SER 6110.0049
LEU 6120.0050
LYS 6130.0059
SER 6140.0061
LEU 6150.0055
ASN 6160.0057
LEU 6170.0051
GLN 6180.0055
LYS 6190.0055
ASN 6200.0049
LEU 6210.0043
ILE 6220.0038
THR 6230.0034
SER 6240.0033
VAL 6250.0037
GLU 6260.0037
LYS 6270.0042
LYS 6280.0038
VAL 6290.0038
PHE 6300.0043
GLY 6310.0043
PRO 6320.0044
ALA 6330.0047
PHE 6340.0051
ARG 6350.0054
ASN 6360.0057
LEU 6370.0059
THR 6380.0068
GLU 6390.0067
LEU 6400.0060
ASP 6410.0060
MET 6420.0051
ARG 6430.0054
PHE 6440.0051
ASN 6450.0044
PRO 6460.0038
PHE 6470.0036
ASP 6480.0032
CYS 6490.0036
THR 6500.0038
CYS 6510.0043
GLU 6520.0040
SER 6530.0035
ILE 6540.0041
ALA 6550.0048
TRP 6560.0047
PHE 6570.0048
VAL 6580.0052
ASN 6590.0058
TRP 6600.0058
ILE 6610.0062
ASN 6620.0068
GLU 6630.0067
THR 6640.0068
HIS 6650.0075
THR 6660.0065
ASN 6670.0069
ILE 6680.0065
PRO 6690.0069
GLU 6700.0068
LEU 6710.0063
SER 6720.0062
SER 6730.0061
HIS 6740.0056
TYR 6750.0050
LEU 6760.0044
CYS 6770.0037
ASN 6780.0033
THR 6790.0030
PRO 6800.0031
PRO 6810.0030
HIS 6820.0034
TYR 6830.0035
HIS 6840.0033
GLY 6850.0039
PHE 6860.0043
PRO 6870.0049
VAL 6880.0048
ARG 6890.0058
LEU 6900.0057
PHE 6910.0051
ASP 6920.0057
THR 6930.0059
SER 6940.0067
SER 6950.0062
CYS 6960.0059
GLU 10.0055
ALA 20.0056
ALA 30.0058
ALA 40.0046
LYS 50.0038
MET 60.0045
GLN 70.0044
ARG 80.0030
LEU 90.0031
VAL 100.0041
LEU 110.0037
LEU 120.0028
LEU 130.0036
ALA 140.0045
ILE 150.0039
SER 160.0041
LEU 170.0047
LEU 180.0051
LEU 190.0047
TYR 200.0047
GLN 210.0049
ASP 220.0053
LEU 230.0053
PRO 240.0046
VAL 250.0045
ARG 260.0056
SER 270.0075
GLU 280.0072
PHE 290.0083
GLU 300.0108
LEU 310.0128
ASP 320.0111
ARG 330.0128
ILE 340.0152
CYS 350.0155
GLY 360.0171
TYR 370.0203
GLY 380.0202
THR 390.0203
ALA 400.0168
ARG 410.0144
CYS 420.0117
ARG 430.0105
LYS 440.0081
LYS 450.0089
CYS 460.0109
ARG 470.0131
SER 480.0139
GLN 490.0156
GLU 500.0140
TYR 510.0121
ARG 520.0102
ILE 530.0118
GLY 540.0104
ARG 550.0092
CYS 560.0099
PRO 570.0095
ASN 580.0072
THR 590.0062
TYR 600.0072
ALA 610.0089
CYS 620.0115
CYS 630.0126
LEU 640.0148
ARG 650.0163
LYS 660.0185
TRP 670.0175
ASP 680.0170
GLU 690.0176
SER 700.0162
LEU 710.0148
LEU 720.0159
ASN 730.0151
ARG 740.0120
THR 750.0117
LYS 760.0144
PRO 770.0142
GLU 780.0170
ALA 790.0207
ALA 800.0188
ALA 810.0306
LYS 820.0322
LYS 830.0285
GLU 840.0253
MET 850.0241
ASN 860.0196
LEU 870.0159
SER 880.0120
VAL 890.0086
GLY 900.0046
LEU 910.0052
GLY 920.0052
GLY 930.0074
GLY 940.0049
SER 950.0087
ASN 960.0095
LEU 970.0128
SER 980.0160
VAL 990.0191
GLY 1000.0236
LEU 1010.0287
GLY 1020.0397
GLU 1030.0490
ILE 1040.0589
GLY 1050.0694
GLY 1060.0762
GLY 1070.0624
SER 1080.0483
LYS 1090.0367
LEU 1100.0238
LEU 1110.0166
ASP 1120.0156
ILE 1130.0124
ASN 1140.0144
LEU 1150.0117
GLY 1160.0169
ARG 1170.0199
GLY 1180.0175
GLY 1190.0160
GLY 1200.0125
SER 1210.0063
MET 1220.0047
VAL 1230.0018
ASP 1240.0074
LEU 1250.0099
THR 1260.0154
PHE 1270.0168
GLY 1280.0209
GLY 1290.0225
VAL 1300.0239
GLY 1310.0112
GLY 1320.0089
GLY 1330.0071
SER 1340.0083
THR 1350.0075
PHE 1360.0100
THR 1370.0075
PHE 1380.0067
PHE 1390.0050
PRO 1400.0056
LEU 1410.0046
VAL 1420.0072
ILE 1430.0062
GLY 1440.0097
GLY 1450.0101
GLY 1460.0112
SER 1470.0090
ASP 1480.0076
ALA 1490.0048
MET 1500.0018
TYR 1510.0032
LEU 1520.0048
GLY 1530.0049
PHE 1540.0067
ALA 1550.0069
ALA 1560.0066
GLY 1570.0049
GLY 1580.0042
GLY 1590.0037
SER 1600.0037
ALA 1610.0104
GLY 1620.0159
GLY 1630.0192
GLU 1640.0202
ASN 1650.0167
HIS 1660.0145
VAL 1670.0103
ALA 1680.0096
PHE 1690.0071
GLY 1700.0106
PRO 1710.0166
GLY 1720.0198
PRO 1730.0193
GLY 1740.0170
VAL 1750.0123
ASP 1760.0136
LEU 1770.0138
THR 1780.0168
PHE 1790.0183
GLY 1800.0222
GLY 1810.0238
VAL 1820.0233
GLN 1830.0207
PHE 1840.0193
ALA 1850.0195
MET 1860.0186
VAL 1870.0214
ASN 1880.0209
ASN 1890.0210
GLY 1900.0219
PRO 1910.0149
GLY 1920.0200
PRO 1930.0359
GLY 1940.0419
GLU 1950.0283
SER 1960.0213
PHE 1970.0234
THR 1980.0136
ALA 1990.0119
GLN 2000.0255
PRO 2010.0332
ALA 2020.0293
ASP 2030.0180
MET 2040.0299
GLN 2050.0225
ALA 2060.0534
GLY 2070.0589
ILE 2080.0389
LYS 2090.0388
GLY 2100.0311
PRO 2110.0085
GLY 2120.0045
PRO 2130.0074
GLY 2140.0146
GLY 2150.0090
SER 2160.0195
ILE 2170.0211
GLN 2180.0171
VAL 2190.0174
ILE 2200.0172
ASN 2210.0176
GLY 2220.0168
SER 2230.0209
THR 2240.0213
ILE 2250.0227
GLY 2260.0296
THR 2270.0338
GLY 2280.0324
SER 2290.0329
LYS 2300.0265
LYS 2310.0211
THR 2320.0143
ILE 2330.0078
LEU 2340.0012
ILE 2350.0065
TYR 2360.0101
SER 2370.0107
ILE 2380.0116
ILE 2390.0123
GLY 2400.0132
VAL 2410.0116
LYS 2420.0108
LYS 2430.0095
GLY 2440.0105
THR 2450.0121
LEU 2460.0138
ALA 2470.0130
TRP 2480.0109
ALA 2490.0104
ARG 2500.0084
THR 2510.0092
GLY 2520.0056
PHE 2530.0103
SER 2540.0165
PRO 2550.0212
ALA 2560.0314
LYS 2570.0385
LYS 2580.0336
LEU 2590.0323
ASN 2600.0304
ALA 2610.0171
GLY 2620.0162
VAL 2630.0174
VAL 2640.0137
ARG 2650.0172
VAL 2660.0199
PHE 2670.0188
PHE 2680.0214
LEU 2690.0204
ASN 2700.0222
GLN 2710.0197
LYS 2720.0210
LYS 2730.0198
ALA 2740.0189
LYS 2750.0201
ASP 2760.0213
VAL 2770.0227
LEU 2780.0280
ARG 2790.0317
LYS 2800.0301
THR 2810.0334
SER 2820.0374
ARG 2830.0328
PRO 2840.0362
MET 2850.0389
VAL 2860.0297
ASP 2870.0299
LEU 2880.0308
THR 2890.0327
PHE 2900.0305
GLY 2910.0483
GLY 2920.0532

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.