CNRS Nantes University US2B US2B
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***  TLR_3_simulation  ***

<R2> analysis for 2608260340483950756

---  normal mode 28  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0333
THR 260.0135
LYS 270.0121
CYS 280.0095
THR 290.0061
VAL 300.0062
SER 310.0051
HIS 320.0070
GLU 330.0070
VAL 340.0037
ALA 350.0056
ASP 360.0053
CYS 370.0092
SER 380.0102
HIS 390.0135
LEU 400.0146
LYS 410.0184
LEU 420.0177
THR 430.0198
GLN 440.0187
VAL 450.0157
PRO 460.0159
ASP 470.0175
ASP 480.0168
LEU 490.0134
PRO 500.0135
THR 510.0142
ASN 520.0122
ILE 530.0089
THR 540.0066
VAL 550.0039
LEU 560.0060
ASN 570.0065
LEU 580.0103
THR 590.0115
HIS 600.0151
ASN 610.0162
GLN 620.0186
LEU 630.0167
ARG 640.0180
ARG 650.0160
LEU 660.0146
PRO 670.0166
ALA 680.0155
ALA 690.0181
ASN 700.0167
PHE 710.0143
THR 720.0163
ARG 730.0161
TYR 740.0127
SER 750.0127
GLN 760.0106
LEU 770.0077
THR 780.0050
SER 790.0031
LEU 800.0058
ASP 810.0068
VAL 820.0098
GLY 830.0109
PHE 840.0141
ASN 850.0153
THR 860.0162
ILE 870.0141
SER 880.0143
LYS 890.0129
LEU 900.0110
GLU 910.0124
PRO 920.0106
GLU 930.0124
LEU 940.0112
CYS 950.0089
GLN 960.0114
LYS 970.0125
LEU 980.0098
PRO 990.0095
MET 1000.0077
LEU 1010.0050
LYS 1020.0027
VAL 1030.0024
LEU 1040.0045
ASN 1050.0065
LEU 1060.0080
GLN 1070.0098
HIS 1080.0124
ASN 1090.0125
GLU 1100.0131
LEU 1110.0095
SER 1120.0095
GLN 1130.0082
LEU 1140.0066
SER 1150.0056
ASP 1160.0044
LYS 1170.0060
THR 1180.0066
PHE 1190.0046
ALA 1200.0044
PHE 1210.0063
CYS 1220.0046
THR 1230.0042
ASN 1240.0038
LEU 1250.0022
THR 1260.0025
GLU 1270.0035
LEU 1280.0041
HIS 1290.0061
LEU 1300.0071
MET 1310.0093
SER 1320.0110
ASN 1330.0097
SER 1340.0104
ILE 1350.0082
GLN 1360.0085
LYS 1370.0076
ILE 1380.0067
LYS 1390.0058
ASN 1400.0049
ASN 1410.0037
PRO 1420.0039
PHE 1430.0033
VAL 1440.0026
LYS 1450.0020
GLN 1460.0022
LYS 1470.0031
ASN 1480.0029
LEU 1490.0032
ILE 1500.0044
THR 1510.0055
LEU 1520.0057
ASP 1530.0070
LEU 1540.0076
SER 1550.0093
HIS 1560.0107
ASN 1570.0097
GLY 1580.0099
LEU 1590.0091
SER 1600.0100
SER 1610.0100
THR 1620.0092
LYS 1630.0084
LEU 1640.0072
GLY 1650.0067
THR 1660.0062
GLN 1670.0058
VAL 1680.0061
GLN 1690.0051
LEU 1700.0048
GLU 1710.0056
ASN 1720.0051
LEU 1730.0057
GLN 1740.0065
GLU 1750.0070
LEU 1760.0078
LEU 1770.0084
LEU 1780.0091
SER 1790.0100
ASN 1800.0107
ASN 1810.0103
LYS 1820.0109
ILE 1830.0108
GLN 1840.0118
ALA 1850.0117
LEU 1860.0107
LYS 1870.0109
SER 1880.0104
GLU 1890.0105
GLU 1900.0099
LEU 1910.0091
ASP 1920.0089
ILE 1930.0078
PHE 1940.0076
ALA 1950.0079
ASN 1960.0071
SER 1970.0070
SER 1980.0074
LEU 1990.0077
LYS 2000.0079
LYS 2010.0084
LEU 2020.0090
GLU 2030.0093
LEU 2040.0099
SER 2050.0100
SER 2060.0103
ASN 2070.0108
GLN 2080.0111
ILE 2090.0110
LYS 2100.0113
GLU 2110.0113
PHE 2120.0105
SER 2130.0112
PRO 2140.0109
GLY 2150.0102
CYS 2160.0101
PHE 2170.0092
HIS 2180.0093
ALA 2190.0095
ILE 2200.0087
GLY 2210.0084
ARG 2220.0083
LEU 2230.0084
PHE 2240.0083
GLY 2250.0084
LEU 2260.0089
PHE 2270.0088
LEU 2280.0088
ASN 2290.0087
ASN 2300.0092
VAL 2310.0092
GLN 2320.0084
LEU 2330.0075
GLY 2340.0062
PRO 2350.0051
SER 2360.0063
LEU 2370.0073
THR 2380.0062
GLU 2390.0058
LYS 2400.0073
LEU 2410.0077
CYS 2420.0066
LEU 2430.0073
GLU 2440.0085
LEU 2450.0078
ALA 2460.0075
ASN 2470.0083
THR 2480.0087
SER 2490.0086
ILE 2500.0078
ARG 2510.0075
ASN 2520.0074
LEU 2530.0072
SER 2540.0073
LEU 2550.0071
SER 2560.0078
ASN 2570.0086
SER 2580.0077
GLN 2590.0070
LEU 2600.0049
SER 2610.0062
THR 2620.0047
THR 2630.0030
SER 2640.0027
ASN 2650.0033
THR 2660.0024
THR 2670.0025
PHE 2680.0032
LEU 2690.0041
GLY 2700.0057
LEU 2710.0051
LYS 2720.0055
TRP 2730.0071
THR 2740.0069
ASN 2750.0069
LEU 2760.0064
THR 2770.0058
MET 2780.0056
LEU 2790.0049
ASP 2800.0057
LEU 2810.0051
SER 2820.0075
TYR 2830.0098
ASN 2840.0080
ASN 2850.0094
LEU 2860.0080
ASN 2870.0094
VAL 2880.0082
VAL 2890.0062
GLY 2900.0067
ASN 2910.0072
ASP 2920.0060
SER 2930.0035
PHE 2940.0029
ALA 2950.0054
TRP 2960.0047
LEU 2970.0045
PRO 2980.0057
GLN 2990.0060
LEU 3000.0042
GLU 3010.0043
TYR 3020.0041
PHE 3030.0029
PHE 3040.0047
LEU 3050.0053
GLU 3060.0081
TYR 3070.0109
ASN 3080.0102
ASN 3090.0119
ILE 3100.0104
GLN 3110.0133
HIS 3120.0128
LEU 3130.0107
PHE 3140.0113
SER 3150.0115
HIS 3160.0093
SER 3170.0072
LEU 3180.0057
HIS 3190.0070
GLY 3200.0068
LEU 3210.0045
PHE 3220.0064
ASN 3230.0057
VAL 3240.0031
ARG 3250.0029
TYR 3260.0023
LEU 3270.0025
ASN 3280.0051
LEU 3290.0069
LYS 3300.0092
ARG 3310.0115
SER 3320.0097
PHE 3330.0119
THR 3340.0150
LYS 3350.0174
GLN 3360.0210
SER 3370.0238
ILE 3380.0266
SER 3390.0291
LEU 3400.0269
ALA 3410.0245
SER 3420.0215
LEU 3430.0193
PRO 3440.0158
LYS 3450.0157
ILE 3460.0131
ASP 3470.0138
ASP 3480.0143
PHE 3490.0125
SER 3500.0104
PHE 3510.0081
GLN 3520.0094
TRP 3530.0080
LEU 3540.0058
LYS 3550.0072
CYS 3560.0056
LEU 3570.0032
GLU 3580.0021
HIS 3590.0016
LEU 3600.0037
ASN 3610.0058
MET 3620.0082
GLU 3630.0101
ASP 3640.0129
ASN 3650.0137
ASP 3660.0160
ILE 3670.0149
PRO 3680.0172
GLY 3690.0156
ILE 3700.0138
LYS 3710.0152
SER 3720.0152
ASN 3730.0140
MET 3740.0120
PHE 3750.0097
THR 3760.0109
GLY 3770.0099
LEU 3780.0073
ILE 3790.0080
ASN 3800.0058
LEU 3810.0040
LYS 3820.0022
TYR 3830.0020
LEU 3840.0046
SER 3850.0066
LEU 3860.0091
SER 3870.0104
ASN 3880.0131
SER 3890.0126
PHE 3900.0145
THR 3910.0172
SER 3920.0165
LEU 3930.0146
ARG 3940.0149
THR 3950.0143
LEU 3960.0122
THR 3970.0134
ASN 3980.0131
GLU 3990.0138
THR 4000.0124
PHE 4010.0107
VAL 4020.0121
SER 4030.0112
LEU 4040.0089
ALA 4050.0099
HIS 4060.0096
SER 4070.0070
PRO 4080.0056
LEU 4090.0040
HIS 4100.0018
ILE 4110.0023
LEU 4120.0047
ASN 4130.0066
LEU 4140.0086
THR 4150.0100
LYS 4160.0124
ASN 4170.0129
LYS 4180.0140
ILE 4190.0124
SER 4200.0130
LYS 4210.0119
ILE 4220.0103
GLU 4230.0114
SER 4240.0109
ASP 4250.0102
ALA 4260.0102
PHE 4270.0080
SER 4280.0091
TRP 4290.0091
LEU 4300.0066
GLY 4310.0064
HIS 4320.0047
LEU 4330.0031
GLU 4340.0009
VAL 4350.0022
LEU 4360.0038
ASP 4370.0058
LEU 4380.0070
GLY 4390.0081
LEU 4400.0104
ASN 4410.0112
GLU 4420.0119
ILE 4430.0099
GLY 4440.0101
GLN 4450.0088
GLU 4460.0067
LEU 4470.0056
THR 4480.0062
GLY 4490.0052
GLN 4500.0069
GLU 4510.0073
TRP 4520.0055
ARG 4530.0070
GLY 4540.0069
LEU 4550.0047
GLU 4560.0049
ASN 4570.0033
ILE 4580.0016
PHE 4590.0018
GLU 4600.0027
ILE 4610.0029
TYR 4620.0048
LEU 4630.0052
SER 4640.0067
TYR 4650.0085
ASN 4660.0085
LYS 4670.0093
TYR 4680.0075
LEU 4690.0054
GLN 4700.0043
LEU 4710.0025
THR 4720.0025
ARG 4730.0026
ASN 4740.0035
SER 4750.0027
PHE 4760.0020
ALA 4770.0034
LEU 4780.0040
VAL 4790.0025
PRO 4800.0030
SER 4810.0026
LEU 4820.0020
GLN 4830.0037
ARG 4840.0041
LEU 4850.0035
MET 4860.0045
LEU 4870.0043
ARG 4880.0059
ARG 4890.0065
VAL 4900.0054
ALA 4910.0053
LEU 4920.0035
LYS 4930.0027
ASN 4940.0014
VAL 4950.0017
ASP 4960.0024
SER 4970.0018
SER 4980.0031
PRO 4990.0032
SER 5000.0024
PRO 5010.0013
PHE 5020.0022
GLN 5030.0030
PRO 5040.0027
LEU 5050.0026
ARG 5060.0042
ASN 5070.0042
LEU 5080.0044
THR 5090.0056
ILE 5100.0059
LEU 5110.0053
ASP 5120.0055
LEU 5130.0047
SER 5140.0055
ASN 5150.0053
ASN 5160.0042
ASN 5170.0039
ILE 5180.0036
ALA 5190.0040
ASN 5200.0040
ILE 5210.0041
ASN 5220.0043
ASP 5230.0051
ASP 5240.0047
MET 5250.0041
LEU 5260.0050
GLU 5270.0053
GLY 5280.0053
LEU 5290.0053
GLU 5300.0064
LYS 5310.0069
LEU 5320.0069
GLU 5330.0079
ILE 5340.0077
LEU 5350.0070
ASP 5360.0068
LEU 5370.0062
GLN 5380.0061
HIS 5390.0056
ASN 5400.0053
ASN 5410.0054
LEU 5420.0056
ALA 5430.0059
ARG 5440.0059
LEU 5450.0059
TRP 5460.0059
LYS 5470.0060
HIS 5480.0061
ALA 5490.0062
ASN 5500.0060
PRO 5510.0060
GLY 5520.0058
GLY 5530.0058
PRO 5540.0058
ILE 5550.0058
TYR 5560.0060
PHE 5570.0061
LEU 5580.0065
LYS 5590.0069
GLY 5600.0075
LEU 5610.0080
SER 5620.0089
HIS 5630.0091
LEU 5640.0086
HIS 5650.0091
ILE 5660.0086
LEU 5670.0079
ASN 5680.0074
LEU 5690.0067
GLU 5700.0065
SER 5710.0063
ASN 5720.0062
GLY 5730.0061
PHE 5740.0058
ASP 5750.0060
GLU 5760.0058
ILE 5770.0058
PRO 5780.0059
VAL 5790.0063
GLU 5800.0065
VAL 5810.0065
PHE 5820.0072
LYS 5830.0079
ASP 5840.0085
LEU 5850.0084
PHE 5860.0101
GLU 5870.0104
LEU 5880.0093
LYS 5890.0090
ILE 5900.0083
ILE 5910.0073
ASP 5920.0070
LEU 5930.0064
GLY 5940.0067
LEU 5950.0075
ASN 5960.0075
ASN 5970.0072
LEU 5980.0060
ASN 5990.0068
THR 6000.0069
LEU 6010.0065
PRO 6020.0071
ALA 6030.0083
SER 6040.0084
VAL 6050.0072
PHE 6060.0073
ASN 6070.0091
ASN 6080.0096
GLN 6090.0089
VAL 6100.0104
SER 6110.0105
LEU 6120.0086
LYS 6130.0082
SER 6140.0071
LEU 6150.0060
ASN 6160.0065
LEU 6170.0059
GLN 6180.0079
LYS 6190.0098
ASN 6200.0082
LEU 6210.0101
ILE 6220.0092
THR 6230.0115
SER 6240.0114
VAL 6250.0100
GLU 6260.0113
LYS 6270.0116
LYS 6280.0118
VAL 6290.0088
PHE 6300.0080
GLY 6310.0096
PRO 6320.0098
ALA 6330.0076
PHE 6340.0074
ARG 6350.0093
ASN 6360.0092
LEU 6370.0071
THR 6380.0072
GLU 6390.0063
LEU 6400.0054
ASP 6410.0068
MET 6420.0071
ARG 6430.0101
PHE 6440.0127
ASN 6450.0114
PRO 6460.0153
PHE 6470.0148
ASP 6480.0173
CYS 6490.0197
THR 6500.0216
CYS 6510.0218
GLU 6520.0202
SER 6530.0167
ILE 6540.0156
ALA 6550.0178
TRP 6560.0149
PHE 6570.0121
VAL 6580.0138
ASN 6590.0144
TRP 6600.0112
ILE 6610.0096
ASN 6620.0117
GLU 6630.0112
THR 6640.0078
HIS 6650.0058
THR 6660.0053
ASN 6670.0056
ILE 6680.0067
PRO 6690.0096
GLU 6700.0124
LEU 6710.0113
SER 6720.0148
SER 6730.0168
HIS 6740.0151
TYR 6750.0138
LEU 6760.0179
CYS 6770.0194
ASN 6780.0211
THR 6790.0217
PRO 6800.0255
PRO 6810.0294
HIS 6820.0307
TYR 6830.0264
HIS 6840.0263
GLY 6850.0250
PHE 6860.0232
PRO 6870.0191
VAL 6880.0168
ARG 6890.0155
LEU 6900.0197
PHE 6910.0213
ASP 6920.0241
THR 6930.0231
SER 6940.0273
SER 6950.0297
CYS 6960.0274
GLU 10.0238
ALA 20.0246
ALA 30.0260
ALA 40.0228
LYS 50.0209
MET 60.0232
GLN 70.0230
ARG 80.0192
LEU 90.0200
VAL 100.0228
LEU 110.0198
LEU 120.0176
LEU 130.0206
ALA 140.0212
ILE 150.0180
SER 160.0190
LEU 170.0200
LEU 180.0176
LEU 190.0166
TYR 200.0187
GLN 210.0162
ASP 220.0139
LEU 230.0153
PRO 240.0149
VAL 250.0174
ARG 260.0178
SER 270.0168
GLU 280.0188
PHE 290.0226
GLU 300.0203
LEU 310.0169
ASP 320.0150
ARG 330.0156
ILE 340.0146
CYS 350.0116
GLY 360.0126
TYR 370.0164
GLY 380.0160
THR 390.0138
ALA 400.0105
ARG 410.0101
CYS 420.0095
ARG 430.0071
LYS 440.0079
LYS 450.0050
CYS 460.0020
ARG 470.0022
SER 480.0046
GLN 490.0054
GLU 500.0044
TYR 510.0045
ARG 520.0031
ILE 530.0058
GLY 540.0054
ARG 550.0065
CYS 560.0098
PRO 570.0132
ASN 580.0131
THR 590.0102
TYR 600.0078
ALA 610.0049
CYS 620.0062
CYS 630.0046
LEU 640.0070
ARG 650.0069
LYS 660.0086
TRP 670.0075
ASP 680.0063
GLU 690.0078
SER 700.0062
LEU 710.0053
LEU 720.0068
ASN 730.0079
ARG 740.0061
THR 750.0055
LYS 760.0038
PRO 770.0058
GLU 780.0101
ALA 790.0101
ALA 800.0125
ALA 810.0198
LYS 820.0191
LYS 830.0181
GLU 840.0178
MET 850.0167
ASN 860.0191
LEU 870.0168
SER 880.0196
VAL 890.0186
GLY 900.0213
LEU 910.0235
GLY 920.0267
GLY 930.0327
GLY 940.0333
SER 950.0305
ASN 960.0260
LEU 970.0227
SER 980.0218
VAL 990.0179
GLY 1000.0181
LEU 1010.0162
GLY 1020.0198
GLU 1030.0210
ILE 1040.0225
GLY 1050.0244
GLY 1060.0219
GLY 1070.0172
SER 1080.0122
LYS 1090.0109
LEU 1100.0069
LEU 1110.0094
ASP 1120.0120
ILE 1130.0149
ASN 1140.0181
LEU 1150.0196
GLY 1160.0257
ARG 1170.0275
GLY 1180.0279
GLY 1190.0240
GLY 1200.0201
SER 1210.0186
MET 1220.0154
VAL 1230.0142
ASP 1240.0140
LEU 1250.0121
THR 1260.0134
PHE 1270.0121
GLY 1280.0145
GLY 1290.0151
VAL 1300.0139
GLY 1310.0139
GLY 1320.0134
GLY 1330.0137
SER 1340.0117
THR 1350.0114
PHE 1360.0081
THR 1370.0076
PHE 1380.0055
PHE 1390.0054
PRO 1400.0041
LEU 1410.0057
VAL 1420.0075
ILE 1430.0096
GLY 1440.0134
GLY 1450.0152
GLY 1460.0197
SER 1470.0183
ASP 1480.0168
ALA 1490.0133
MET 1500.0093
TYR 1510.0060
LEU 1520.0039
GLY 1530.0032
PHE 1540.0045
ALA 1550.0069
ALA 1560.0103
GLY 1570.0116
GLY 1580.0122
GLY 1590.0131
SER 1600.0132
ALA 1610.0165
GLY 1620.0166
GLY 1630.0160
GLU 1640.0137
ASN 1650.0109
HIS 1660.0116
VAL 1670.0083
ALA 1680.0093
PHE 1690.0086
GLY 1700.0095
PRO 1710.0116
GLY 1720.0082
PRO 1730.0062
GLY 1740.0037
VAL 1750.0042
ASP 1760.0074
LEU 1770.0080
THR 1780.0119
PHE 1790.0136
GLY 1800.0178
GLY 1810.0196
VAL 1820.0178
GLN 1830.0142
PHE 1840.0114
ALA 1850.0092
MET 1860.0068
VAL 1870.0083
ASN 1880.0089
ASN 1890.0136
GLY 1900.0151
PRO 1910.0121
GLY 1920.0053
PRO 1930.0087
GLY 1940.0137
GLU 1950.0071
SER 1960.0081
PHE 1970.0072
THR 1980.0091
ALA 1990.0133
GLN 2000.0148
PRO 2010.0221
ALA 2020.0170
ASP 2030.0033
MET 2040.0139
GLN 2050.0091
ALA 2060.0165
GLY 2070.0203
ILE 2080.0122
LYS 2090.0141
GLY 2100.0107
PRO 2110.0041
GLY 2120.0036
PRO 2130.0064
GLY 2140.0101
GLY 2150.0082
SER 2160.0123
ILE 2170.0107
GLN 2180.0099
VAL 2190.0069
ILE 2200.0090
ASN 2210.0098
GLY 2220.0100
SER 2230.0155
THR 2240.0169
ILE 2250.0202
GLY 2260.0247
THR 2270.0266
GLY 2280.0243
SER 2290.0242
LYS 2300.0202
LYS 2310.0189
THR 2320.0153
ILE 2330.0132
LEU 2340.0102
ILE 2350.0081
TYR 2360.0087
SER 2370.0072
ILE 2380.0080
ILE 2390.0078
GLY 2400.0089
VAL 2410.0104
LYS 2420.0112
LYS 2430.0110
GLY 2440.0127
THR 2450.0138
LEU 2460.0132
ALA 2470.0117
TRP 2480.0107
ALA 2490.0085
ARG 2500.0077
THR 2510.0050
GLY 2520.0045
PHE 2530.0068
SER 2540.0090
PRO 2550.0133
ALA 2560.0187
LYS 2570.0240
LYS 2580.0226
LEU 2590.0201
ASN 2600.0204
ALA 2610.0073
GLY 2620.0076
VAL 2630.0033
VAL 2640.0024
ARG 2650.0024
VAL 2660.0022
PHE 2670.0029
PHE 2680.0042
LEU 2690.0051
ASN 2700.0066
GLN 2710.0076
LYS 2720.0072
LYS 2730.0058
ALA 2740.0062
LYS 2750.0069
ASP 2760.0056
VAL 2770.0064
LEU 2780.0089
ARG 2790.0096
LYS 2800.0090
THR 2810.0122
SER 2820.0139
ARG 2830.0104
PRO 2840.0106
MET 2850.0100
VAL 2860.0086
ASP 2870.0098
LEU 2880.0091
THR 2890.0110
PHE 2900.0094
GLY 2910.0140
GLY 2920.0167

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elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.