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***  TLR_3_simulation  ***

<R2> analysis for 2608260340483950756

---  normal mode 30  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0895
THR 260.0008
LYS 270.0008
CYS 280.0009
THR 290.0009
VAL 300.0009
SER 310.0011
HIS 320.0012
GLU 330.0011
VAL 340.0013
ALA 350.0012
ASP 360.0014
CYS 370.0014
SER 380.0016
HIS 390.0016
LEU 400.0015
LYS 410.0018
LEU 420.0016
THR 430.0016
GLN 440.0015
VAL 450.0014
PRO 460.0013
ASP 470.0012
ASP 480.0013
LEU 490.0013
PRO 500.0012
THR 510.0013
ASN 520.0013
ILE 530.0013
THR 540.0013
VAL 550.0014
LEU 560.0014
ASN 570.0016
LEU 580.0016
THR 590.0018
HIS 600.0020
ASN 610.0019
GLN 620.0019
LEU 630.0017
ARG 640.0017
ARG 650.0015
LEU 660.0014
PRO 670.0013
ALA 680.0011
ALA 690.0011
ASN 700.0012
PHE 710.0012
THR 720.0011
ARG 730.0012
TYR 740.0012
SER 750.0011
GLN 760.0012
LEU 770.0012
THR 780.0012
SER 790.0013
LEU 800.0013
ASP 810.0015
VAL 820.0016
GLY 830.0017
PHE 840.0019
ASN 850.0019
THR 860.0019
ILE 870.0016
SER 880.0016
LYS 890.0015
LEU 900.0013
GLU 910.0011
PRO 920.0010
GLU 930.0010
LEU 940.0010
CYS 950.0009
GLN 960.0009
LYS 970.0009
LEU 980.0010
PRO 990.0009
MET 1000.0010
LEU 1010.0010
LYS 1020.0010
VAL 1030.0011
LEU 1040.0011
ASN 1050.0013
LEU 1060.0013
GLN 1070.0015
HIS 1080.0017
ASN 1090.0017
GLU 1100.0017
LEU 1110.0014
SER 1120.0014
GLN 1130.0013
LEU 1140.0011
SER 1150.0011
ASP 1160.0010
LYS 1170.0010
THR 1180.0009
PHE 1190.0008
ALA 1200.0007
PHE 1210.0007
CYS 1220.0007
THR 1230.0007
ASN 1240.0008
LEU 1250.0008
THR 1260.0009
GLU 1270.0010
LEU 1280.0009
HIS 1290.0010
LEU 1300.0010
MET 1310.0012
SER 1320.0014
ASN 1330.0014
SER 1340.0014
ILE 1350.0012
GLN 1360.0012
LYS 1370.0011
ILE 1380.0010
LYS 1390.0011
ASN 1400.0011
ASN 1410.0009
PRO 1420.0008
PHE 1430.0007
VAL 1440.0008
LYS 1450.0008
GLN 1460.0007
LYS 1470.0009
ASN 1480.0009
LEU 1490.0008
ILE 1500.0010
THR 1510.0009
LEU 1520.0007
ASP 1530.0008
LEU 1540.0007
SER 1550.0009
HIS 1560.0011
ASN 1570.0010
GLY 1580.0011
LEU 1590.0009
SER 1600.0009
SER 1610.0008
THR 1620.0007
LYS 1630.0008
LEU 1640.0007
GLY 1650.0009
THR 1660.0012
GLN 1670.0012
VAL 1680.0012
GLN 1690.0010
LEU 1700.0009
GLU 1710.0011
ASN 1720.0011
LEU 1730.0009
GLN 1740.0010
GLU 1750.0009
LEU 1760.0007
LEU 1770.0007
LEU 1780.0005
SER 1790.0007
ASN 1800.0008
ASN 1810.0008
LYS 1820.0008
ILE 1830.0007
GLN 1840.0008
ALA 1850.0007
LEU 1860.0007
LYS 1870.0009
SER 1880.0010
GLU 1890.0011
GLU 1900.0009
LEU 1910.0008
ASP 1920.0011
ILE 1930.0010
PHE 1940.0010
ALA 1950.0012
ASN 1960.0013
SER 1970.0011
SER 1980.0012
LEU 1990.0010
LYS 2000.0011
LYS 2010.0009
LEU 2020.0007
GLU 2030.0006
LEU 2040.0005
SER 2050.0006
SER 2060.0006
ASN 2070.0006
GLN 2080.0006
ILE 2090.0006
LYS 2100.0007
GLU 2110.0007
PHE 2120.0007
SER 2130.0008
PRO 2140.0009
GLY 2150.0009
CYS 2160.0008
PHE 2170.0008
HIS 2180.0010
ALA 2190.0010
ILE 2200.0010
GLY 2210.0012
ARG 2220.0012
LEU 2230.0010
PHE 2240.0010
GLY 2250.0008
LEU 2260.0006
PHE 2270.0005
LEU 2280.0004
ASN 2290.0005
ASN 2300.0005
VAL 2310.0004
GLN 2320.0005
LEU 2330.0005
GLY 2340.0006
PRO 2350.0006
SER 2360.0007
LEU 2370.0006
THR 2380.0005
GLU 2390.0005
LYS 2400.0005
LEU 2410.0005
CYS 2420.0004
LEU 2430.0005
GLU 2440.0006
LEU 2450.0006
ALA 2460.0007
ASN 2470.0008
THR 2480.0009
SER 2490.0009
ILE 2500.0008
ARG 2510.0008
ASN 2520.0007
LEU 2530.0006
SER 2540.0005
LEU 2550.0005
SER 2560.0005
ASN 2570.0005
SER 2580.0004
GLN 2590.0005
LEU 2600.0006
SER 2610.0007
THR 2620.0008
THR 2630.0007
SER 2640.0008
ASN 2650.0008
THR 2660.0007
THR 2670.0005
PHE 2680.0004
LEU 2690.0004
GLY 2700.0004
LEU 2710.0004
LYS 2720.0004
TRP 2730.0005
THR 2740.0005
ASN 2750.0006
LEU 2760.0005
THR 2770.0007
MET 2780.0007
LEU 2790.0006
ASP 2800.0006
LEU 2810.0006
SER 2820.0007
TYR 2830.0007
ASN 2840.0006
ASN 2850.0007
LEU 2860.0008
ASN 2870.0009
VAL 2880.0009
VAL 2890.0009
GLY 2900.0009
ASN 2910.0011
ASP 2920.0009
SER 2930.0008
PHE 2940.0007
ALA 2950.0008
TRP 2960.0005
LEU 2970.0005
PRO 2980.0006
GLN 2990.0007
LEU 3000.0007
GLU 3010.0009
TYR 3020.0009
PHE 3030.0008
PHE 3040.0008
LEU 3050.0008
GLU 3060.0009
TYR 3070.0009
ASN 3080.0008
ASN 3090.0009
ILE 3100.0009
GLN 3110.0010
HIS 3120.0011
LEU 3130.0011
PHE 3140.0012
SER 3150.0013
HIS 3160.0012
SER 3170.0011
LEU 3180.0010
HIS 3190.0011
GLY 3200.0010
LEU 3210.0010
PHE 3220.0011
ASN 3230.0010
VAL 3240.0010
ARG 3250.0012
TYR 3260.0011
LEU 3270.0011
ASN 3280.0010
LEU 3290.0010
LYS 3300.0010
ARG 3310.0010
SER 3320.0009
PHE 3330.0010
THR 3340.0010
LYS 3350.0010
GLN 3360.0011
SER 3370.0010
ILE 3380.0011
SER 3390.0011
LEU 3400.0011
ALA 3410.0011
SER 3420.0010
LEU 3430.0011
PRO 3440.0011
LYS 3450.0011
ILE 3460.0013
ASP 3470.0014
ASP 3480.0016
PHE 3490.0016
SER 3500.0014
PHE 3510.0014
GLN 3520.0015
TRP 3530.0014
LEU 3540.0013
LYS 3550.0015
CYS 3560.0014
LEU 3570.0014
GLU 3580.0015
HIS 3590.0014
LEU 3600.0013
ASN 3610.0011
MET 3620.0011
GLU 3630.0010
ASP 3640.0009
ASN 3650.0009
ASP 3660.0010
ILE 3670.0011
PRO 3680.0012
GLY 3690.0013
ILE 3700.0014
LYS 3710.0016
SER 3720.0018
ASN 3730.0018
MET 3740.0016
PHE 3750.0016
THR 3760.0018
GLY 3770.0018
LEU 3780.0017
ILE 3790.0019
ASN 3800.0018
LEU 3810.0017
LYS 3820.0018
TYR 3830.0016
LEU 3840.0015
SER 3850.0013
LEU 3860.0012
SER 3870.0011
ASN 3880.0009
SER 3890.0010
PHE 3900.0010
THR 3910.0008
SER 3920.0008
LEU 3930.0010
ARG 3940.0009
THR 3950.0011
LEU 3960.0014
THR 3970.0016
ASN 3980.0019
GLU 3990.0019
THR 4000.0016
PHE 4010.0017
VAL 4020.0020
SER 4030.0019
LEU 4040.0019
ALA 4050.0022
HIS 4060.0022
SER 4070.0020
PRO 4080.0022
LEU 4090.0020
HIS 4100.0020
ILE 4110.0018
LEU 4120.0016
ASN 4130.0014
LEU 4140.0012
THR 4150.0011
LYS 4160.0008
ASN 4170.0008
LYS 4180.0007
ILE 4190.0009
SER 4200.0008
LYS 4210.0010
ILE 4220.0013
GLU 4230.0015
SER 4240.0018
ASP 4250.0020
ALA 4260.0018
PHE 4270.0019
SER 4280.0022
TRP 4290.0022
LEU 4300.0021
GLY 4310.0024
HIS 4320.0024
LEU 4330.0021
GLU 4340.0022
VAL 4350.0020
LEU 4360.0018
ASP 4370.0016
LEU 4380.0013
GLY 4390.0013
LEU 4400.0011
ASN 4410.0008
GLU 4420.0007
ILE 4430.0009
GLY 4440.0008
GLN 4450.0010
GLU 4460.0012
LEU 4470.0015
THR 4480.0017
GLY 4490.0019
GLN 4500.0020
GLU 4510.0018
TRP 4520.0020
ARG 4530.0023
GLY 4540.0024
LEU 4550.0023
GLU 4560.0027
ASN 4570.0026
ILE 4580.0024
PHE 4590.0025
GLU 4600.0022
ILE 4610.0020
TYR 4620.0018
LEU 4630.0015
SER 4640.0015
TYR 4650.0013
ASN 4660.0010
LYS 4670.0007
TYR 4680.0008
LEU 4690.0011
GLN 4700.0011
LEU 4710.0014
THR 4720.0016
ARG 4730.0019
ASN 4740.0020
SER 4750.0018
PHE 4760.0021
ALA 4770.0025
LEU 4780.0024
VAL 4790.0025
PRO 4800.0028
SER 4810.0029
LEU 4820.0026
GLN 4830.0028
ARG 4840.0025
LEU 4850.0021
MET 4860.0020
LEU 4870.0017
ARG 4880.0017
ARG 4890.0015
VAL 4900.0012
ALA 4910.0011
LEU 4920.0012
LYS 4930.0011
ASN 4940.0012
VAL 4950.0015
ASP 4960.0014
SER 4970.0015
SER 4980.0018
PRO 4990.0020
SER 5000.0019
PRO 5010.0019
PHE 5020.0021
GLN 5030.0023
PRO 5040.0025
LEU 5050.0025
ARG 5060.0029
ASN 5070.0029
LEU 5080.0027
THR 5090.0029
ILE 5100.0026
LEU 5110.0023
ASP 5120.0022
LEU 5130.0019
SER 5140.0019
ASN 5150.0018
ASN 5160.0015
ASN 5170.0014
ILE 5180.0013
ALA 5190.0012
ASN 5200.0013
ILE 5210.0015
ASN 5220.0016
ASP 5230.0019
ASP 5240.0020
MET 5250.0019
LEU 5260.0020
GLU 5270.0023
GLY 5280.0025
LEU 5290.0025
GLU 5300.0028
LYS 5310.0029
LEU 5320.0027
GLU 5330.0029
ILE 5340.0027
LEU 5350.0024
ASP 5360.0024
LEU 5370.0021
GLN 5380.0022
HIS 5390.0020
ASN 5400.0017
ASN 5410.0016
LEU 5420.0016
ALA 5430.0016
ARG 5440.0013
LEU 5450.0014
TRP 5460.0016
LYS 5470.0014
HIS 5480.0014
ALA 5490.0012
ASN 5500.0012
PRO 5510.0012
GLY 5520.0014
GLY 5530.0015
PRO 5540.0016
ILE 5550.0017
TYR 5560.0020
PHE 5570.0020
LEU 5580.0022
LYS 5590.0023
GLY 5600.0025
LEU 5610.0027
SER 5620.0028
HIS 5630.0028
LEU 5640.0028
HIS 5650.0028
ILE 5660.0030
LEU 5670.0027
ASN 5680.0026
LEU 5690.0023
GLU 5700.0024
SER 5710.0022
ASN 5720.0019
GLY 5730.0018
PHE 5740.0017
ASP 5750.0016
GLU 5760.0016
ILE 5770.0018
PRO 5780.0018
VAL 5790.0020
GLU 5800.0021
VAL 5810.0022
PHE 5820.0024
LYS 5830.0025
ASP 5840.0026
LEU 5850.0027
PHE 5860.0028
GLU 5870.0030
LEU 5880.0030
LYS 5890.0029
ILE 5900.0030
ILE 5910.0028
ASP 5920.0027
LEU 5930.0024
GLY 5940.0026
LEU 5950.0025
ASN 5960.0022
ASN 5970.0019
LEU 5980.0018
ASN 5990.0018
THR 6000.0014
LEU 6010.0017
PRO 6020.0016
ALA 6030.0019
SER 6040.0023
VAL 6050.0022
PHE 6060.0025
ASN 6070.0026
ASN 6080.0026
GLN 6090.0026
VAL 6100.0028
SER 6110.0033
LEU 6120.0031
LYS 6130.0034
SER 6140.0032
LEU 6150.0028
ASN 6160.0030
LEU 6170.0027
GLN 6180.0030
LYS 6190.0028
ASN 6200.0024
LEU 6210.0023
ILE 6220.0023
THR 6230.0023
SER 6240.0021
VAL 6250.0024
GLU 6260.0020
LYS 6270.0024
LYS 6280.0021
VAL 6290.0021
PHE 6300.0025
GLY 6310.0024
PRO 6320.0028
ALA 6330.0029
PHE 6340.0031
ARG 6350.0035
ASN 6360.0036
LEU 6370.0036
THR 6380.0042
GLU 6390.0040
LEU 6400.0034
ASP 6410.0036
MET 6420.0032
ARG 6430.0035
PHE 6440.0034
ASN 6450.0030
PRO 6460.0031
PHE 6470.0032
ASP 6480.0031
CYS 6490.0035
THR 6500.0033
CYS 6510.0031
GLU 6520.0024
SER 6530.0025
ILE 6540.0031
ALA 6550.0034
TRP 6560.0032
PHE 6570.0034
VAL 6580.0039
ASN 6590.0041
TRP 6600.0041
ILE 6610.0045
ASN 6620.0047
GLU 6630.0047
THR 6640.0047
HIS 6650.0049
THR 6660.0045
ASN 6670.0047
ILE 6680.0044
PRO 6690.0047
GLU 6700.0048
LEU 6710.0048
SER 6720.0052
SER 6730.0051
HIS 6740.0044
TYR 6750.0041
LEU 6760.0043
CYS 6770.0041
ASN 6780.0039
THR 6790.0035
PRO 6800.0039
PRO 6810.0046
HIS 6820.0049
TYR 6830.0047
HIS 6840.0047
GLY 6850.0050
PHE 6860.0050
PRO 6870.0049
VAL 6880.0044
ARG 6890.0048
LEU 6900.0052
PHE 6910.0046
ASP 6920.0048
THR 6930.0044
SER 6940.0047
SER 6950.0043
CYS 6960.0038
GLU 10.0011
ALA 20.0011
ALA 30.0011
ALA 40.0011
LYS 50.0011
MET 60.0011
GLN 70.0011
ARG 80.0011
LEU 90.0011
VAL 100.0012
LEU 110.0012
LEU 120.0011
LEU 130.0012
ALA 140.0012
ILE 150.0012
SER 160.0014
LEU 170.0015
LEU 180.0012
LEU 190.0013
TYR 200.0016
GLN 210.0016
ASP 220.0015
LEU 230.0019
PRO 240.0022
VAL 250.0024
ARG 260.0034
SER 270.0033
GLU 280.0032
PHE 290.0033
GLU 300.0033
LEU 310.0034
ASP 320.0030
ARG 330.0028
ILE 340.0031
CYS 350.0030
GLY 360.0035
TYR 370.0043
GLY 380.0039
THR 390.0036
ALA 400.0028
ARG 410.0024
CYS 420.0021
ARG 430.0016
LYS 440.0012
LYS 450.0009
CYS 460.0010
ARG 470.0015
SER 480.0018
GLN 490.0023
GLU 500.0019
TYR 510.0015
ARG 520.0014
ILE 530.0019
GLY 540.0020
ARG 550.0021
CYS 560.0024
PRO 570.0027
ASN 580.0024
THR 590.0021
TYR 600.0017
ALA 610.0014
CYS 620.0019
CYS 630.0017
LEU 640.0023
ARG 650.0025
LYS 660.0025
TRP 670.0024
ASP 680.0026
GLU 690.0018
SER 700.0025
LEU 710.0031
LEU 720.0022
ASN 730.0014
ARG 740.0024
THR 750.0035
LYS 760.0034
PRO 770.0052
GLU 780.0053
ALA 790.0086
ALA 800.0091
ALA 810.0156
LYS 820.0159
LYS 830.0147
GLU 840.0142
MET 850.0135
ASN 860.0124
LEU 870.0112
SER 880.0108
VAL 890.0110
GLY 900.0123
LEU 910.0149
GLY 920.0182
GLY 930.0217
GLY 940.0202
SER 950.0174
ASN 960.0133
LEU 970.0117
SER 980.0112
VAL 990.0112
GLY 1000.0127
LEU 1010.0147
GLY 1020.0166
GLU 1030.0189
ILE 1040.0199
GLY 1050.0223
GLY 1060.0222
GLY 1070.0194
SER 1080.0189
LYS 1090.0168
LEU 1100.0152
LEU 1110.0124
ASP 1120.0116
ILE 1130.0109
ASN 1140.0128
LEU 1150.0139
GLY 1160.0163
ARG 1170.0189
GLY 1180.0190
GLY 1190.0198
GLY 1200.0189
SER 1210.0162
MET 1220.0143
VAL 1230.0122
ASP 1240.0107
LEU 1250.0106
THR 1260.0108
PHE 1270.0112
GLY 1280.0112
GLY 1290.0118
VAL 1300.0130
GLY 1310.0117
GLY 1320.0127
GLY 1330.0111
SER 1340.0123
THR 1350.0119
PHE 1360.0161
THR 1370.0175
PHE 1380.0160
PHE 1390.0182
PRO 1400.0176
LEU 1410.0163
VAL 1420.0190
ILE 1430.0150
GLY 1440.0173
GLY 1450.0158
GLY 1460.0149
SER 1470.0128
ASP 1480.0109
ALA 1490.0099
MET 1500.0094
TYR 1510.0087
LEU 1520.0114
GLY 1530.0134
PHE 1540.0166
ALA 1550.0191
ALA 1560.0197
GLY 1570.0154
GLY 1580.0105
GLY 1590.0062
SER 1600.0032
ALA 1610.0083
GLY 1620.0083
GLY 1630.0090
GLU 1640.0100
ASN 1650.0112
HIS 1660.0105
VAL 1670.0117
ALA 1680.0118
PHE 1690.0138
GLY 1700.0154
PRO 1710.0248
GLY 1720.0273
PRO 1730.0293
GLY 1740.0237
VAL 1750.0182
ASP 1760.0147
LEU 1770.0136
THR 1780.0110
PHE 1790.0114
GLY 1800.0101
GLY 1810.0087
VAL 1820.0111
GLN 1830.0132
PHE 1840.0168
ALA 1850.0200
MET 1860.0239
VAL 1870.0326
ASN 1880.0382
ASN 1890.0465
GLY 1900.0513
PRO 1910.0398
GLY 1920.0347
PRO 1930.0254
GLY 1940.0114
GLU 1950.0133
SER 1960.0383
PHE 1970.0355
THR 1980.0307
ALA 1990.0296
GLN 2000.0348
PRO 2010.0253
ALA 2020.0276
ASP 2030.0293
MET 2040.0311
GLN 2050.0292
ALA 2060.0338
GLY 2070.0293
ILE 2080.0227
LYS 2090.0194
GLY 2100.0124
PRO 2110.0059
GLY 2120.0031
PRO 2130.0041
GLY 2140.0065
GLY 2150.0062
SER 2160.0147
ILE 2170.0200
GLN 2180.0210
VAL 2190.0245
ILE 2200.0363
ASN 2210.0309
GLY 2220.0251
SER 2230.0324
THR 2240.0336
ILE 2250.0318
GLY 2260.0382
THR 2270.0419
GLY 2280.0327
SER 2290.0362
LYS 2300.0259
LYS 2310.0248
THR 2320.0159
ILE 2330.0138
LEU 2340.0071
ILE 2350.0086
TYR 2360.0106
SER 2370.0192
ILE 2380.0221
ILE 2390.0260
GLY 2400.0296
VAL 2410.0251
LYS 2420.0222
LYS 2430.0147
GLY 2440.0050
THR 2450.0107
LEU 2460.0103
ALA 2470.0166
TRP 2480.0149
ALA 2490.0224
ARG 2500.0209
THR 2510.0207
GLY 2520.0225
PHE 2530.0248
SER 2540.0303
PRO 2550.0326
ALA 2560.0451
LYS 2570.0578
LYS 2580.0591
LEU 2590.0546
ASN 2600.0608
ALA 2610.0480
GLY 2620.0384
VAL 2630.0319
VAL 2640.0260
ARG 2650.0186
VAL 2660.0177
PHE 2670.0164
PHE 2680.0160
LEU 2690.0157
ASN 2700.0161
GLN 2710.0234
LYS 2720.0196
LYS 2730.0151
ALA 2740.0198
LYS 2750.0240
ASP 2760.0194
VAL 2770.0198
LEU 2780.0288
ARG 2790.0326
LYS 2800.0280
THR 2810.0310
SER 2820.0461
ARG 2830.0337
PRO 2840.0443
MET 2850.0613
VAL 2860.0376
ASP 2870.0177
LEU 2880.0451
THR 2890.0322
PHE 2900.0141
GLY 2910.0765
GLY 2920.0895

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.