CNRS Nantes University US2B US2B
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***  TLR_3_simulation  ***

<R2> analysis for 2608260340483950756

---  normal mode 31  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0422
THR 260.0031
LYS 270.0044
CYS 280.0061
THR 290.0065
VAL 300.0085
SER 310.0092
HIS 320.0115
GLU 330.0121
VAL 340.0114
ALA 350.0098
ASP 360.0090
CYS 370.0081
SER 380.0078
HIS 390.0063
LEU 400.0056
LYS 410.0068
LEU 420.0072
THR 430.0068
GLN 440.0077
VAL 450.0086
PRO 460.0085
ASP 470.0094
ASP 480.0099
LEU 490.0102
PRO 500.0112
THR 510.0124
ASN 520.0130
ILE 530.0120
THR 540.0121
VAL 550.0111
LEU 560.0108
ASN 570.0101
LEU 580.0095
THR 590.0092
HIS 600.0083
ASN 610.0079
GLN 620.0072
LEU 630.0071
ARG 640.0063
ARG 650.0065
LEU 660.0072
PRO 670.0076
ALA 680.0080
ALA 690.0089
ASN 700.0092
PHE 710.0095
THR 720.0103
ARG 730.0110
TYR 740.0107
SER 750.0110
GLN 760.0114
LEU 770.0105
THR 780.0102
SER 790.0098
LEU 800.0091
ASP 810.0091
VAL 820.0084
GLY 830.0080
PHE 840.0076
ASN 850.0073
THR 860.0062
ILE 870.0058
SER 880.0047
LYS 890.0046
LEU 900.0050
GLU 910.0051
PRO 920.0045
GLU 930.0059
LEU 940.0067
CYS 950.0061
GLN 960.0068
LYS 970.0080
LEU 980.0082
PRO 990.0079
MET 1000.0087
LEU 1010.0074
LYS 1020.0076
VAL 1030.0079
LEU 1040.0067
ASN 1050.0070
LEU 1060.0057
GLN 1070.0061
HIS 1080.0061
ASN 1090.0055
GLU 1100.0045
LEU 1110.0037
SER 1120.0025
GLN 1130.0017
LEU 1140.0018
SER 1150.0013
ASP 1160.0015
LYS 1170.0016
THR 1180.0025
PHE 1190.0030
ALA 1200.0022
PHE 1210.0031
CYS 1220.0041
THR 1230.0041
ASN 1240.0056
LEU 1250.0059
THR 1260.0070
GLU 1270.0071
LEU 1280.0057
HIS 1290.0059
LEU 1300.0044
MET 1310.0053
SER 1320.0050
ASN 1330.0039
SER 1340.0032
ILE 1350.0025
GLN 1360.0025
LYS 1370.0029
ILE 1380.0032
LYS 1390.0032
ASN 1400.0037
ASN 1410.0038
PRO 1420.0030
PHE 1430.0042
VAL 1440.0045
LYS 1450.0040
GLN 1460.0049
LYS 1470.0061
ASN 1480.0068
LEU 1490.0067
ILE 1500.0081
THR 1510.0076
LEU 1520.0063
ASP 1530.0061
LEU 1540.0049
SER 1550.0055
HIS 1560.0049
ASN 1570.0040
GLY 1580.0034
LEU 1590.0040
SER 1600.0044
SER 1610.0054
THR 1620.0061
LYS 1630.0060
LEU 1640.0056
GLY 1650.0060
THR 1660.0067
GLN 1670.0076
VAL 1680.0084
GLN 1690.0075
LEU 1700.0076
GLU 1710.0091
ASN 1720.0093
LEU 1730.0086
GLN 1740.0093
GLU 1750.0085
LEU 1760.0076
LEU 1770.0069
LEU 1780.0061
SER 1790.0060
ASN 1800.0050
ASN 1810.0044
LYS 1820.0041
ILE 1830.0048
GLN 1840.0046
ALA 1850.0054
LEU 1860.0060
LYS 1870.0068
SER 1880.0078
GLU 1890.0080
GLU 1900.0073
LEU 1910.0078
ASP 1920.0089
ILE 1930.0086
PHE 1940.0091
ALA 1950.0102
ASN 1960.0111
SER 1970.0104
SER 1980.0108
LEU 1990.0098
LYS 2000.0103
LYS 2010.0091
LEU 2020.0082
GLU 2030.0073
LEU 2040.0063
SER 2050.0057
SER 2060.0044
ASN 2070.0043
GLN 2080.0033
ILE 2090.0041
LYS 2100.0038
GLU 2110.0045
PHE 2120.0053
SER 2130.0064
PRO 2140.0070
GLY 2150.0079
CYS 2160.0076
PHE 2170.0079
HIS 2180.0090
ALA 2190.0094
ILE 2200.0096
GLY 2210.0112
ARG 2220.0110
LEU 2230.0099
PHE 2240.0102
GLY 2250.0091
LEU 2260.0075
PHE 2270.0068
LEU 2280.0051
ASN 2290.0054
ASN 2300.0047
VAL 2310.0034
GLN 2320.0019
LEU 2330.0011
GLY 2340.0011
PRO 2350.0009
SER 2360.0018
LEU 2370.0019
THR 2380.0019
GLU 2390.0021
LYS 2400.0037
LEU 2410.0040
CYS 2420.0043
LEU 2430.0053
GLU 2440.0062
LEU 2450.0065
ALA 2460.0072
ASN 2470.0089
THR 2480.0091
SER 2490.0099
ILE 2500.0086
ARG 2510.0085
ASN 2520.0082
LEU 2530.0064
SER 2540.0063
LEU 2550.0047
SER 2560.0067
ASN 2570.0065
SER 2580.0045
GLN 2590.0049
LEU 2600.0041
SER 2610.0064
THR 2620.0057
THR 2630.0042
SER 2640.0036
ASN 2650.0028
THR 2660.0023
THR 2670.0013
PHE 2680.0018
LEU 2690.0024
GLY 2700.0040
LEU 2710.0043
LYS 2720.0046
TRP 2730.0064
THR 2740.0067
ASN 2750.0076
LEU 2760.0062
THR 2770.0074
MET 2780.0075
LEU 2790.0061
ASP 2800.0070
LEU 2810.0065
SER 2820.0086
TYR 2830.0096
ASN 2840.0080
ASN 2850.0094
LEU 2860.0086
ASN 2870.0094
VAL 2880.0081
VAL 2890.0066
GLY 2900.0058
ASN 2910.0047
ASP 2920.0031
SER 2930.0032
PHE 2940.0030
ALA 2950.0018
TRP 2960.0019
LEU 2970.0033
PRO 2980.0041
GLN 2990.0057
LEU 3000.0058
GLU 3010.0071
TYR 3020.0079
PHE 3030.0072
PHE 3040.0084
LEU 3050.0084
GLU 3060.0106
TYR 3070.0117
ASN 3080.0109
ASN 3090.0115
ILE 3100.0102
GLN 3110.0108
HIS 3120.0097
LEU 3130.0083
PHE 3140.0074
SER 3150.0062
HIS 3160.0050
SER 3170.0054
LEU 3180.0050
HIS 3190.0035
GLY 3200.0027
LEU 3210.0040
PHE 3220.0041
ASN 3230.0053
VAL 3240.0061
ARG 3250.0075
TYR 3260.0085
LEU 3270.0083
ASN 3280.0097
LEU 3290.0101
LYS 3300.0117
ARG 3310.0126
SER 3320.0111
PHE 3330.0115
THR 3340.0130
LYS 3350.0146
GLN 3360.0158
SER 3370.0174
ILE 3380.0185
SER 3390.0198
LEU 3400.0182
ALA 3410.0163
SER 3420.0149
LEU 3430.0134
PRO 3440.0115
LYS 3450.0101
ILE 3460.0088
ASP 3470.0080
ASP 3480.0070
PHE 3490.0059
SER 3500.0064
PHE 3510.0061
GLN 3520.0049
TRP 3530.0043
LEU 3540.0052
LYS 3550.0048
CYS 3560.0057
LEU 3570.0067
GLU 3580.0077
HIS 3590.0088
LEU 3600.0089
ASN 3610.0102
MET 3620.0104
GLU 3630.0118
ASP 3640.0129
ASN 3650.0125
ASP 3660.0125
ILE 3670.0111
PRO 3680.0108
GLY 3690.0093
ILE 3700.0080
LYS 3710.0076
SER 3720.0065
ASN 3730.0063
MET 3740.0070
PHE 3750.0066
THR 3760.0057
GLY 3770.0052
LEU 3780.0058
ILE 3790.0053
ASN 3800.0060
LEU 3810.0069
LYS 3820.0075
TYR 3830.0085
LEU 3840.0086
SER 3850.0096
LEU 3860.0098
SER 3870.0108
ASN 3880.0115
SER 3890.0109
PHE 3900.0106
THR 3910.0114
SER 3920.0093
LEU 3930.0079
ARG 3940.0063
THR 3950.0055
LEU 3960.0051
THR 3970.0049
ASN 3980.0044
GLU 3990.0057
THR 4000.0062
PHE 4010.0058
VAL 4020.0056
SER 4030.0062
LEU 4040.0060
ALA 4050.0053
HIS 4060.0053
SER 4070.0059
PRO 4080.0058
LEU 4090.0064
HIS 4100.0068
ILE 4110.0076
LEU 4120.0074
ASN 4130.0082
LEU 4140.0079
THR 4150.0087
LYS 4160.0091
ASN 4170.0086
LYS 4180.0076
ILE 4190.0063
SER 4200.0052
LYS 4210.0040
ILE 4220.0037
GLU 4230.0036
SER 4240.0032
ASP 4250.0032
ALA 4260.0041
PHE 4270.0041
SER 4280.0037
TRP 4290.0043
LEU 4300.0047
GLY 4310.0041
HIS 4320.0051
LEU 4330.0054
GLU 4340.0061
VAL 4350.0065
LEU 4360.0059
ASP 4370.0064
LEU 4380.0056
GLY 4390.0063
LEU 4400.0069
ASN 4410.0062
GLU 4420.0050
ILE 4430.0039
GLY 4440.0030
GLN 4450.0028
GLU 4460.0031
LEU 4470.0030
THR 4480.0034
GLY 4490.0033
GLN 4500.0028
GLU 4510.0028
TRP 4520.0031
ARG 4530.0029
GLY 4540.0030
LEU 4550.0037
GLU 4560.0041
ASN 4570.0051
ILE 4580.0051
PHE 4590.0063
GLU 4600.0061
ILE 4610.0051
TYR 4620.0053
LEU 4630.0045
SER 4640.0051
TYR 4650.0049
ASN 4660.0040
LYS 4670.0032
TYR 4680.0028
LEU 4690.0031
GLN 4700.0035
LEU 4710.0041
THR 4720.0045
ARG 4730.0053
ASN 4740.0048
SER 4750.0042
PHE 4760.0049
ALA 4770.0053
LEU 4780.0045
VAL 4790.0050
PRO 4800.0063
SER 4810.0064
LEU 4820.0062
GLN 4830.0072
ARG 4840.0068
LEU 4850.0060
MET 4860.0056
LEU 4870.0049
ARG 4880.0051
ARG 4890.0044
VAL 4900.0037
ALA 4910.0036
LEU 4920.0039
LYS 4930.0042
ASN 4940.0049
VAL 4950.0054
ASP 4960.0055
SER 4970.0056
SER 4980.0066
PRO 4990.0070
SER 5000.0064
PRO 5010.0060
PHE 5020.0065
GLN 5030.0073
PRO 5040.0073
LEU 5050.0073
ARG 5060.0082
ASN 5070.0082
LEU 5080.0079
THR 5090.0082
ILE 5100.0078
LEU 5110.0071
ASP 5120.0065
LEU 5130.0060
SER 5140.0058
ASN 5150.0051
ASN 5160.0048
ASN 5170.0045
ILE 5180.0048
ALA 5190.0047
ASN 5200.0050
ILE 5210.0058
ASN 5220.0064
ASP 5230.0069
ASP 5240.0073
MET 5250.0069
LEU 5260.0076
GLU 5270.0081
GLY 5280.0086
LEU 5290.0084
GLU 5300.0088
LYS 5310.0086
LEU 5320.0082
GLU 5330.0081
ILE 5340.0079
LEU 5350.0075
ASP 5360.0066
LEU 5370.0061
GLN 5380.0056
HIS 5390.0050
ASN 5400.0050
ASN 5410.0043
LEU 5420.0045
ALA 5430.0038
ARG 5440.0038
LEU 5450.0044
TRP 5460.0038
LYS 5470.0032
HIS 5480.0032
ALA 5490.0036
ASN 5500.0043
PRO 5510.0050
GLY 5520.0056
GLY 5530.0045
PRO 5540.0044
ILE 5550.0055
TYR 5560.0060
PHE 5570.0067
LEU 5580.0068
LYS 5590.0070
GLY 5600.0078
LEU 5610.0077
SER 5620.0075
HIS 5630.0082
LEU 5640.0081
HIS 5650.0083
ILE 5660.0076
LEU 5670.0066
ASN 5680.0061
LEU 5690.0053
GLU 5700.0048
SER 5710.0041
ASN 5720.0042
GLY 5730.0035
PHE 5740.0033
ASP 5750.0030
GLU 5760.0029
ILE 5770.0034
PRO 5780.0035
VAL 5790.0038
GLU 5800.0046
VAL 5810.0052
PHE 5820.0056
LYS 5830.0055
ASP 5840.0065
LEU 5850.0070
PHE 5860.0073
GLU 5870.0081
LEU 5880.0075
LYS 5890.0079
ILE 5900.0074
ILE 5910.0061
ASP 5920.0054
LEU 5930.0042
GLY 5940.0038
LEU 5950.0033
ASN 5960.0032
ASN 5970.0037
LEU 5980.0035
ASN 5990.0048
THR 6000.0049
LEU 6010.0035
PRO 6020.0035
ALA 6030.0045
SER 6040.0051
VAL 6050.0045
PHE 6060.0051
ASN 6070.0053
ASN 6080.0059
GLN 6090.0067
VAL 6100.0077
SER 6110.0090
LEU 6120.0079
LYS 6130.0091
SER 6140.0079
LEU 6150.0061
ASN 6160.0054
LEU 6170.0040
GLN 6180.0037
LYS 6190.0032
ASN 6200.0036
LEU 6210.0059
ILE 6220.0064
THR 6230.0087
SER 6240.0093
VAL 6250.0091
GLU 6260.0091
LYS 6270.0100
LYS 6280.0082
VAL 6290.0062
PHE 6300.0076
GLY 6310.0084
PRO 6320.0084
ALA 6330.0081
PHE 6340.0096
ARG 6350.0111
ASN 6360.0107
LEU 6370.0101
THR 6380.0115
GLU 6390.0100
LEU 6400.0082
ASP 6410.0068
MET 6420.0061
ARG 6430.0057
PHE 6440.0053
ASN 6450.0063
PRO 6460.0096
PHE 6470.0111
ASP 6480.0138
CYS 6490.0163
THR 6500.0183
CYS 6510.0190
GLU 6520.0167
SER 6530.0140
ILE 6540.0143
ALA 6550.0173
TRP 6560.0151
PHE 6570.0133
VAL 6580.0156
ASN 6590.0173
TRP 6600.0155
ILE 6610.0150
ASN 6620.0172
GLU 6630.0180
THR 6640.0164
HIS 6650.0163
THR 6660.0134
ASN 6670.0126
ILE 6680.0108
PRO 6690.0100
GLU 6700.0095
LEU 6710.0114
SER 6720.0128
SER 6730.0103
HIS 6740.0083
TYR 6750.0099
LEU 6760.0118
CYS 6770.0140
ASN 6780.0142
THR 6790.0161
PRO 6800.0195
PRO 6810.0213
HIS 6820.0230
TYR 6830.0198
HIS 6840.0178
GLY 6850.0155
PHE 6860.0164
PRO 6870.0149
VAL 6880.0148
ARG 6890.0165
LEU 6900.0190
PHE 6910.0196
ASP 6920.0232
THR 6930.0231
SER 6940.0270
SER 6950.0272
CYS 6960.0249
GLU 10.0178
ALA 20.0192
ALA 30.0196
ALA 40.0172
LYS 50.0169
MET 60.0183
GLN 70.0179
ARG 80.0157
LEU 90.0167
VAL 100.0184
LEU 110.0163
LEU 120.0153
LEU 130.0170
ALA 140.0177
ILE 150.0161
SER 160.0167
LEU 170.0158
LEU 180.0160
LEU 190.0165
TYR 200.0161
GLN 210.0129
ASP 220.0153
LEU 230.0185
PRO 240.0172
VAL 250.0167
ARG 260.0266
SER 270.0267
GLU 280.0253
PHE 290.0251
GLU 300.0262
LEU 310.0253
ASP 320.0209
ARG 330.0191
ILE 340.0209
CYS 350.0193
GLY 360.0205
TYR 370.0259
GLY 380.0247
THR 390.0208
ALA 400.0162
ARG 410.0149
CYS 420.0130
ARG 430.0094
LYS 440.0063
LYS 450.0045
CYS 460.0057
ARG 470.0059
SER 480.0052
GLN 490.0069
GLU 500.0069
TYR 510.0063
ARG 520.0082
ILE 530.0124
GLY 540.0138
ARG 550.0136
CYS 560.0154
PRO 570.0176
ASN 580.0136
THR 590.0122
TYR 600.0092
ALA 610.0099
CYS 620.0121
CYS 630.0095
LEU 640.0105
ARG 650.0093
LYS 660.0081
TRP 670.0074
ASP 680.0052
GLU 690.0084
SER 700.0043
LEU 710.0052
LEU 720.0098
ASN 730.0064
ARG 740.0030
THR 750.0093
LYS 760.0096
PRO 770.0091
GLU 780.0115
ALA 790.0149
ALA 800.0108
ALA 810.0123
LYS 820.0125
LYS 830.0137
GLU 840.0132
MET 850.0146
ASN 860.0161
LEU 870.0162
SER 880.0192
VAL 890.0194
GLY 900.0232
LEU 910.0254
GLY 920.0307
GLY 930.0359
GLY 940.0353
SER 950.0302
ASN 960.0242
LEU 970.0200
SER 980.0180
VAL 990.0138
GLY 1000.0123
LEU 1010.0114
GLY 1020.0110
GLU 1030.0108
ILE 1040.0100
GLY 1050.0099
GLY 1060.0094
GLY 1070.0087
SER 1080.0088
LYS 1090.0088
LEU 1100.0084
LEU 1110.0101
ASP 1120.0108
ILE 1130.0143
ASN 1140.0162
LEU 1150.0188
GLY 1160.0238
ARG 1170.0240
GLY 1180.0261
GLY 1190.0239
GLY 1200.0241
SER 1210.0220
MET 1220.0218
VAL 1230.0191
ASP 1240.0198
LEU 1250.0174
THR 1260.0169
PHE 1270.0159
GLY 1280.0167
GLY 1290.0179
VAL 1300.0169
GLY 1310.0108
GLY 1320.0116
GLY 1330.0107
SER 1340.0124
THR 1350.0118
PHE 1360.0143
THR 1370.0140
PHE 1380.0134
PHE 1390.0125
PRO 1400.0123
LEU 1410.0116
VAL 1420.0114
ILE 1430.0116
GLY 1440.0114
GLY 1450.0126
GLY 1460.0138
SER 1470.0144
ASP 1480.0154
ALA 1490.0138
MET 1500.0133
TYR 1510.0115
LEU 1520.0118
GLY 1530.0117
PHE 1540.0123
ALA 1550.0129
ALA 1560.0142
GLY 1570.0116
GLY 1580.0102
GLY 1590.0086
SER 1600.0085
ALA 1610.0146
GLY 1620.0167
GLY 1630.0171
GLU 1640.0172
ASN 1650.0154
HIS 1660.0193
VAL 1670.0192
ALA 1680.0205
PHE 1690.0202
GLY 1700.0228
PRO 1710.0257
GLY 1720.0282
PRO 1730.0280
GLY 1740.0272
VAL 1750.0240
ASP 1760.0241
LEU 1770.0229
THR 1780.0241
PHE 1790.0241
GLY 1800.0258
GLY 1810.0294
VAL 1820.0304
GLN 1830.0297
PHE 1840.0288
ALA 1850.0297
MET 1860.0294
VAL 1870.0343
ASN 1880.0336
ASN 1890.0363
GLY 1900.0361
PRO 1910.0336
GLY 1920.0281
PRO 1930.0335
GLY 1940.0296
GLU 1950.0117
SER 1960.0108
PHE 1970.0103
THR 1980.0051
ALA 1990.0100
GLN 2000.0108
PRO 2010.0180
ALA 2020.0127
ASP 2030.0059
MET 2040.0138
GLN 2050.0094
ALA 2060.0178
GLY 2070.0182
ILE 2080.0118
LYS 2090.0094
GLY 2100.0077
PRO 2110.0037
GLY 2120.0064
PRO 2130.0091
GLY 2140.0096
GLY 2150.0065
SER 2160.0025
ILE 2170.0029
GLN 2180.0021
VAL 2190.0053
ILE 2200.0051
ASN 2210.0072
GLY 2220.0056
SER 2230.0046
THR 2240.0059
ILE 2250.0043
GLY 2260.0040
THR 2270.0030
GLY 2280.0076
SER 2290.0128
LYS 2300.0110
LYS 2310.0061
THR 2320.0044
ILE 2330.0056
LEU 2340.0043
ILE 2350.0079
TYR 2360.0103
SER 2370.0086
ILE 2380.0098
ILE 2390.0047
GLY 2400.0067
VAL 2410.0090
LYS 2420.0084
LYS 2430.0154
GLY 2440.0261
THR 2450.0243
LEU 2460.0202
ALA 2470.0172
TRP 2480.0154
ALA 2490.0136
ARG 2500.0119
THR 2510.0103
GLY 2520.0119
PHE 2530.0117
SER 2540.0147
PRO 2550.0143
ALA 2560.0173
LYS 2570.0206
LYS 2580.0212
LEU 2590.0198
ASN 2600.0219
ALA 2610.0182
GLY 2620.0140
VAL 2630.0136
VAL 2640.0078
ARG 2650.0065
VAL 2660.0087
PHE 2670.0087
PHE 2680.0121
LEU 2690.0128
ASN 2700.0145
GLN 2710.0189
LYS 2720.0245
LYS 2730.0210
ALA 2740.0167
LYS 2750.0229
ASP 2760.0223
VAL 2770.0134
LEU 2780.0155
ARG 2790.0173
LYS 2800.0114
THR 2810.0118
SER 2820.0164
ARG 2830.0171
PRO 2840.0240
MET 2850.0251
VAL 2860.0265
ASP 2870.0133
LEU 2880.0163
THR 2890.0042
PHE 2900.0058
GLY 2910.0311
GLY 2920.0422

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elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.