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***  TLR_3_simulation  ***

<R2> analysis for 2608260340483950756

---  normal mode 33  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.1701
THR 260.0015
LYS 270.0018
CYS 280.0020
THR 290.0023
VAL 300.0035
SER 310.0041
HIS 320.0051
GLU 330.0050
VAL 340.0042
ALA 350.0034
ASP 360.0026
CYS 370.0019
SER 380.0014
HIS 390.0006
LEU 400.0005
LYS 410.0005
LEU 420.0011
THR 430.0013
GLN 440.0019
VAL 450.0022
PRO 460.0028
ASP 470.0036
ASP 480.0040
LEU 490.0039
PRO 500.0046
THR 510.0049
ASN 520.0052
ILE 530.0045
THR 540.0044
VAL 550.0038
LEU 560.0032
ASN 570.0026
LEU 580.0020
THR 590.0017
HIS 600.0010
ASN 610.0008
GLN 620.0006
LEU 630.0008
ARG 640.0007
ARG 650.0009
LEU 660.0013
PRO 670.0018
ALA 680.0020
ALA 690.0027
ASN 700.0028
PHE 710.0029
THR 720.0034
ARG 730.0040
TYR 740.0036
SER 750.0038
GLN 760.0040
LEU 770.0034
THR 780.0035
SER 790.0031
LEU 800.0024
ASP 810.0021
VAL 820.0016
GLY 830.0014
PHE 840.0010
ASN 850.0007
THR 860.0004
ILE 870.0004
SER 880.0003
LYS 890.0003
LEU 900.0005
GLU 910.0005
PRO 920.0005
GLU 930.0009
LEU 940.0014
CYS 950.0015
GLN 960.0016
LYS 970.0021
LEU 980.0023
PRO 990.0025
MET 1000.0029
LEU 1010.0023
LYS 1020.0027
VAL 1030.0025
LEU 1040.0018
ASN 1050.0016
LEU 1060.0010
GLN 1070.0011
HIS 1080.0008
ASN 1090.0006
GLU 1100.0005
LEU 1110.0008
SER 1120.0011
GLN 1130.0014
LEU 1140.0015
SER 1150.0018
ASP 1160.0021
LYS 1170.0016
THR 1180.0013
PHE 1190.0016
ALA 1200.0019
PHE 1210.0016
CYS 1220.0018
THR 1230.0023
ASN 1240.0026
LEU 1250.0025
THR 1260.0029
GLU 1270.0025
LEU 1280.0020
HIS 1290.0017
LEU 1300.0013
MET 1310.0011
SER 1320.0008
ASN 1330.0008
SER 1340.0010
ILE 1350.0013
GLN 1360.0016
LYS 1370.0020
ILE 1380.0022
LYS 1390.0026
ASN 1400.0029
ASN 1410.0029
PRO 1420.0024
PHE 1430.0026
VAL 1440.0031
LYS 1450.0030
GLN 1460.0029
LYS 1470.0035
ASN 1480.0035
LEU 1490.0030
ILE 1500.0032
THR 1510.0028
LEU 1520.0023
ASP 1530.0019
LEU 1540.0015
SER 1550.0013
HIS 1560.0007
ASN 1570.0010
GLY 1580.0012
LEU 1590.0016
SER 1600.0018
SER 1610.0022
THR 1620.0023
LYS 1630.0027
LEU 1640.0028
GLY 1650.0033
THR 1660.0039
GLN 1670.0042
VAL 1680.0043
GLN 1690.0039
LEU 1700.0036
GLU 1710.0042
ASN 1720.0041
LEU 1730.0035
GLN 1740.0035
GLU 1750.0029
LEU 1760.0025
LEU 1770.0019
LEU 1780.0016
SER 1790.0011
ASN 1800.0005
ASN 1810.0008
LYS 1820.0011
ILE 1830.0013
GLN 1840.0015
ALA 1850.0017
LEU 1860.0019
LYS 1870.0026
SER 1880.0030
GLU 1890.0035
GLU 1900.0031
LEU 1910.0030
ASP 1920.0037
ILE 1930.0038
PHE 1940.0037
ALA 1950.0042
ASN 1960.0046
SER 1970.0041
SER 1980.0040
LEU 1990.0033
LYS 2000.0034
LYS 2010.0028
LEU 2020.0022
GLU 2030.0018
LEU 2040.0012
SER 2050.0010
SER 2060.0006
ASN 2070.0002
GLN 2080.0006
ILE 2090.0008
LYS 2100.0014
GLU 2110.0015
PHE 2120.0015
SER 2130.0022
PRO 2140.0024
GLY 2150.0026
CYS 2160.0024
PHE 2170.0023
HIS 2180.0029
ALA 2190.0033
ILE 2200.0033
GLY 2210.0039
ARG 2220.0036
LEU 2230.0030
PHE 2240.0031
GLY 2250.0026
LEU 2260.0018
PHE 2270.0018
LEU 2280.0011
ASN 2290.0017
ASN 2300.0018
VAL 2310.0011
GLN 2320.0014
LEU 2330.0012
GLY 2340.0017
PRO 2350.0016
SER 2360.0016
LEU 2370.0010
THR 2380.0007
GLU 2390.0007
LYS 2400.0008
LEU 2410.0003
CYS 2420.0003
LEU 2430.0008
GLU 2440.0013
LEU 2450.0013
ALA 2460.0014
ASN 2470.0022
THR 2480.0023
SER 2490.0028
ILE 2500.0023
ARG 2510.0026
ASN 2520.0026
LEU 2530.0020
SER 2540.0022
LEU 2550.0019
SER 2560.0028
ASN 2570.0029
SER 2580.0023
GLN 2590.0027
LEU 2600.0025
SER 2610.0031
THR 2620.0029
THR 2630.0024
SER 2640.0021
ASN 2650.0017
THR 2660.0014
THR 2670.0014
PHE 2680.0011
LEU 2690.0006
GLY 2700.0003
LEU 2710.0008
LYS 2720.0007
TRP 2730.0011
THR 2740.0015
ASN 2750.0021
LEU 2760.0020
THR 2770.0026
MET 2780.0028
LEU 2790.0026
ASP 2800.0030
LEU 2810.0031
SER 2820.0037
TYR 2830.0040
ASN 2840.0036
ASN 2850.0040
LEU 2860.0037
ASN 2870.0039
VAL 2880.0035
VAL 2890.0030
GLY 2900.0027
ASN 2910.0023
ASP 2920.0019
SER 2930.0021
PHE 2940.0020
ALA 2950.0016
TRP 2960.0012
LEU 2970.0016
PRO 2980.0018
GLN 2990.0021
LEU 3000.0024
GLU 3010.0029
TYR 3020.0032
PHE 3030.0032
PHE 3040.0036
LEU 3050.0037
GLU 3060.0042
TYR 3070.0046
ASN 3080.0043
ASN 3090.0044
ILE 3100.0040
GLN 3110.0040
HIS 3120.0036
LEU 3130.0032
PHE 3140.0028
SER 3150.0024
HIS 3160.0023
SER 3170.0025
LEU 3180.0024
HIS 3190.0020
GLY 3200.0018
LEU 3210.0022
PHE 3220.0021
ASN 3230.0024
VAL 3240.0027
ARG 3250.0031
TYR 3260.0035
LEU 3270.0035
ASN 3280.0040
LEU 3290.0040
LYS 3300.0045
ARG 3310.0047
SER 3320.0042
PHE 3330.0043
THR 3340.0047
LYS 3350.0051
GLN 3360.0052
SER 3370.0056
ILE 3380.0058
SER 3390.0061
LEU 3400.0057
ALA 3410.0052
SER 3420.0048
LEU 3430.0044
PRO 3440.0039
LYS 3450.0034
ILE 3460.0031
ASP 3470.0027
ASP 3480.0022
PHE 3490.0019
SER 3500.0024
PHE 3510.0024
GLN 3520.0020
TRP 3530.0020
LEU 3540.0023
LYS 3550.0021
CYS 3560.0026
LEU 3570.0029
GLU 3580.0032
HIS 3590.0036
LEU 3600.0035
ASN 3610.0039
MET 3620.0039
GLU 3630.0044
ASP 3640.0047
ASN 3650.0045
ASP 3660.0043
ILE 3670.0037
PRO 3680.0034
GLY 3690.0028
ILE 3700.0023
LYS 3710.0021
SER 3720.0016
ASN 3730.0016
MET 3740.0021
PHE 3750.0021
THR 3760.0017
GLY 3770.0017
LEU 3780.0021
ILE 3790.0020
ASN 3800.0025
LEU 3810.0028
LYS 3820.0032
TYR 3830.0035
LEU 3840.0032
SER 3850.0036
LEU 3860.0034
SER 3870.0039
ASN 3880.0041
SER 3890.0038
PHE 3900.0035
THR 3910.0038
SER 3920.0030
LEU 3930.0023
ARG 3940.0017
THR 3950.0011
LEU 3960.0008
THR 3970.0005
ASN 3980.0002
GLU 3990.0005
THR 4000.0011
PHE 4010.0012
VAL 4020.0009
SER 4030.0014
LEU 4040.0017
ALA 4050.0014
HIS 4060.0015
SER 4070.0021
PRO 4080.0026
LEU 4090.0027
HIS 4100.0032
ILE 4110.0033
LEU 4120.0028
ASN 4130.0031
LEU 4140.0027
THR 4150.0031
LYS 4160.0032
ASN 4170.0029
LYS 4180.0025
ILE 4190.0018
SER 4200.0013
LYS 4210.0006
ILE 4220.0001
GLU 4230.0005
SER 4240.0011
ASP 4250.0012
ALA 4260.0006
PHE 4270.0013
SER 4280.0015
TRP 4290.0015
LEU 4300.0020
GLY 4310.0026
HIS 4320.0030
LEU 4330.0028
GLU 4340.0034
VAL 4350.0032
LEU 4360.0026
ASP 4370.0026
LEU 4380.0019
GLY 4390.0023
LEU 4400.0026
ASN 4410.0021
GLU 4420.0017
ILE 4430.0009
GLY 4440.0008
GLN 4450.0007
GLU 4460.0013
LEU 4470.0013
THR 4480.0019
GLY 4490.0021
GLN 4500.0020
GLU 4510.0014
TRP 4520.0019
ARG 4530.0023
GLY 4540.0026
LEU 4550.0027
GLU 4560.0037
ASN 4570.0039
ILE 4580.0034
PHE 4590.0039
GLU 4600.0033
ILE 4610.0025
TYR 4620.0022
LEU 4630.0015
SER 4640.0017
TYR 4650.0018
ASN 4660.0012
LYS 4670.0011
TYR 4680.0006
LEU 4690.0005
GLN 4700.0013
LEU 4710.0017
THR 4720.0024
ARG 4730.0030
ASN 4740.0029
SER 4750.0023
PHE 4760.0026
ALA 4770.0032
LEU 4780.0031
VAL 4790.0032
PRO 4800.0038
SER 4810.0038
LEU 4820.0033
GLN 4830.0035
ARG 4840.0030
LEU 4850.0024
MET 4860.0020
LEU 4870.0013
ARG 4880.0013
ARG 4890.0010
VAL 4900.0005
ALA 4910.0006
LEU 4920.0007
LYS 4930.0014
ASN 4940.0020
VAL 4950.0020
ASP 4960.0026
SER 4970.0030
SER 4980.0037
PRO 4990.0038
SER 5000.0032
PRO 5010.0027
PHE 5020.0028
GLN 5030.0035
PRO 5040.0038
LEU 5050.0036
ARG 5060.0039
ASN 5070.0039
LEU 5080.0033
THR 5090.0034
ILE 5100.0029
LEU 5110.0024
ASP 5120.0018
LEU 5130.0012
SER 5140.0009
ASN 5150.0007
ASN 5160.0005
ASN 5170.0010
ILE 5180.0012
ALA 5190.0019
ASN 5200.0024
ILE 5210.0024
ASN 5220.0031
ASP 5230.0034
ASP 5240.0037
MET 5250.0030
LEU 5260.0031
GLU 5270.0037
GLY 5280.0042
LEU 5290.0038
GLU 5300.0042
LYS 5310.0041
LEU 5320.0035
GLU 5330.0035
ILE 5340.0029
LEU 5350.0024
ASP 5360.0017
LEU 5370.0011
GLN 5380.0007
HIS 5390.0005
ASN 5400.0007
ASN 5410.0015
LEU 5420.0016
ALA 5430.0018
ARG 5440.0026
LEU 5450.0027
TRP 5460.0025
LYS 5470.0029
HIS 5480.0036
ALA 5490.0041
ASN 5500.0041
PRO 5510.0049
GLY 5520.0051
GLY 5530.0045
PRO 5540.0036
ILE 5550.0034
TYR 5560.0034
PHE 5570.0031
LEU 5580.0031
LYS 5590.0038
GLY 5600.0043
LEU 5610.0037
SER 5620.0041
HIS 5630.0040
LEU 5640.0035
HIS 5650.0035
ILE 5660.0029
LEU 5670.0022
ASN 5680.0015
LEU 5690.0010
GLU 5700.0004
SER 5710.0007
ASN 5720.0009
GLY 5730.0013
PHE 5740.0013
ASP 5750.0016
GLU 5760.0018
ILE 5770.0020
PRO 5780.0028
VAL 5790.0031
GLU 5800.0036
VAL 5810.0030
PHE 5820.0031
LYS 5830.0037
ASP 5840.0041
LEU 5850.0037
PHE 5860.0038
GLU 5870.0038
LEU 5880.0033
LYS 5890.0032
ILE 5900.0027
ILE 5910.0021
ASP 5920.0014
LEU 5930.0007
GLY 5940.0006
LEU 5950.0009
ASN 5960.0009
ASN 5970.0014
LEU 5980.0008
ASN 5990.0009
THR 6000.0010
LEU 6010.0014
PRO 6020.0021
ALA 6030.0025
SER 6040.0031
VAL 6050.0028
PHE 6060.0030
ASN 6070.0035
ASN 6080.0037
GLN 6090.0034
VAL 6100.0038
SER 6110.0040
LEU 6120.0033
LYS 6130.0033
SER 6140.0027
LEU 6150.0019
ASN 6160.0015
LEU 6170.0009
GLN 6180.0014
LYS 6190.0017
ASN 6200.0012
LEU 6210.0018
ILE 6220.0012
THR 6230.0017
SER 6240.0011
VAL 6250.0014
GLU 6260.0014
LYS 6270.0023
LYS 6280.0022
VAL 6290.0020
PHE 6300.0022
GLY 6310.0027
PRO 6320.0034
ALA 6330.0029
PHE 6340.0031
ARG 6350.0040
ASN 6360.0039
LEU 6370.0035
THR 6380.0040
GLU 6390.0033
LEU 6400.0025
ASP 6410.0023
MET 6420.0020
ARG 6430.0025
PHE 6440.0028
ASN 6450.0023
PRO 6460.0031
PHE 6470.0030
ASP 6480.0032
CYS 6490.0040
THR 6500.0037
CYS 6510.0035
GLU 6520.0023
SER 6530.0022
ILE 6540.0030
ALA 6550.0038
TRP 6560.0034
PHE 6570.0033
VAL 6580.0042
ASN 6590.0047
TRP 6600.0044
ILE 6610.0046
ASN 6620.0052
GLU 6630.0053
THR 6640.0048
HIS 6650.0047
THR 6660.0045
ASN 6670.0044
ILE 6680.0039
PRO 6690.0040
GLU 6700.0043
LEU 6710.0046
SER 6720.0055
SER 6730.0052
HIS 6740.0042
TYR 6750.0040
LEU 6760.0046
CYS 6770.0046
ASN 6780.0047
THR 6790.0045
PRO 6800.0052
PRO 6810.0064
HIS 6820.0069
TYR 6830.0061
HIS 6840.0061
GLY 6850.0062
PHE 6860.0061
PRO 6870.0055
VAL 6880.0047
ARG 6890.0054
LEU 6900.0063
PHE 6910.0058
ASP 6920.0063
THR 6930.0057
SER 6940.0066
SER 6950.0062
CYS 6960.0051
GLU 10.0057
ALA 20.0062
ALA 30.0062
ALA 40.0056
LYS 50.0057
MET 60.0061
GLN 70.0059
ARG 80.0054
LEU 90.0058
VAL 100.0062
LEU 110.0056
LEU 120.0054
LEU 130.0059
ALA 140.0060
ILE 150.0056
SER 160.0056
LEU 170.0051
LEU 180.0056
LEU 190.0058
TYR 200.0051
GLN 210.0041
ASP 220.0056
LEU 230.0066
PRO 240.0062
VAL 250.0056
ARG 260.0093
SER 270.0099
GLU 280.0089
PHE 290.0093
GLU 300.0104
LEU 310.0097
ASP 320.0076
ARG 330.0069
ILE 340.0076
CYS 350.0070
GLY 360.0077
TYR 370.0097
GLY 380.0089
THR 390.0070
ALA 400.0053
ARG 410.0049
CYS 420.0043
ARG 430.0029
LYS 440.0017
LYS 450.0007
CYS 460.0010
ARG 470.0005
SER 480.0008
GLN 490.0006
GLU 500.0017
TYR 510.0027
ARG 520.0032
ILE 530.0048
GLY 540.0050
ARG 550.0045
CYS 560.0051
PRO 570.0058
ASN 580.0044
THR 590.0035
TYR 600.0027
ALA 610.0029
CYS 620.0040
CYS 630.0030
LEU 640.0036
ARG 650.0025
LYS 660.0019
TRP 670.0012
ASP 680.0017
GLU 690.0015
SER 700.0015
LEU 710.0012
LEU 720.0012
ASN 730.0013
ARG 740.0008
THR 750.0025
LYS 760.0036
PRO 770.0052
GLU 780.0063
ALA 790.0082
ALA 800.0079
ALA 810.0071
LYS 820.0072
LYS 830.0072
GLU 840.0072
MET 850.0073
ASN 860.0073
LEU 870.0074
SER 880.0072
VAL 890.0074
GLY 900.0072
LEU 910.0075
GLY 920.0074
GLY 930.0072
GLY 940.0069
SER 950.0071
ASN 960.0072
LEU 970.0074
SER 980.0073
VAL 990.0075
GLY 1000.0075
LEU 1010.0075
GLY 1020.0077
GLU 1030.0073
ILE 1040.0075
GLY 1050.0074
GLY 1060.0060
GLY 1070.0060
SER 1080.0058
LYS 1090.0061
LEU 1100.0060
LEU 1110.0072
ASP 1120.0074
ILE 1130.0074
ASN 1140.0077
LEU 1150.0076
GLY 1160.0081
ARG 1170.0084
GLY 1180.0078
GLY 1190.0080
GLY 1200.0077
SER 1210.0075
MET 1220.0073
VAL 1230.0073
ASP 1240.0069
LEU 1250.0073
THR 1260.0071
PHE 1270.0071
GLY 1280.0069
GLY 1290.0067
VAL 1300.0069
GLY 1310.0037
GLY 1320.0051
GLY 1330.0043
SER 1340.0056
THR 1350.0051
PHE 1360.0081
THR 1370.0086
PHE 1380.0084
PHE 1390.0090
PRO 1400.0089
LEU 1410.0080
VAL 1420.0079
ILE 1430.0067
GLY 1440.0064
GLY 1450.0067
GLY 1460.0061
SER 1470.0060
ASP 1480.0063
ALA 1490.0063
MET 1500.0065
TYR 1510.0060
LEU 1520.0071
GLY 1530.0068
PHE 1540.0081
ALA 1550.0081
ALA 1560.0086
GLY 1570.0059
GLY 1580.0045
GLY 1590.0019
SER 1600.0022
ALA 1610.0039
GLY 1620.0045
GLY 1630.0054
GLU 1640.0066
ASN 1650.0069
HIS 1660.0071
VAL 1670.0077
ALA 1680.0073
PHE 1690.0079
GLY 1700.0079
PRO 1710.0115
GLY 1720.0125
PRO 1730.0141
GLY 1740.0117
VAL 1750.0100
ASP 1760.0083
LEU 1770.0084
THR 1780.0074
PHE 1790.0078
GLY 1800.0069
GLY 1810.0060
VAL 1820.0076
GLN 1830.0080
PHE 1840.0097
ALA 1850.0104
MET 1860.0125
VAL 1870.0172
ASN 1880.0207
ASN 1890.0261
GLY 1900.0289
PRO 1910.0273
GLY 1920.0253
PRO 1930.0204
GLY 1940.0113
GLU 1950.0095
SER 1960.0191
PHE 1970.0204
THR 1980.0224
ALA 1990.0257
GLN 2000.0290
PRO 2010.0231
ALA 2020.0180
ASP 2030.0219
MET 2040.0234
GLN 2050.0189
ALA 2060.0249
GLY 2070.0212
ILE 2080.0156
LYS 2090.0121
GLY 2100.0078
PRO 2110.0006
GLY 2120.0027
PRO 2130.0044
GLY 2140.0038
GLY 2150.0008
SER 2160.0028
ILE 2170.0059
GLN 2180.0099
VAL 2190.0116
ILE 2200.0168
ASN 2210.0133
GLY 2220.0094
SER 2230.0050
THR 2240.0060
ILE 2250.0068
GLY 2260.0146
THR 2270.0197
GLY 2280.0222
SER 2290.0235
LYS 2300.0185
LYS 2310.0122
THR 2320.0084
ILE 2330.0026
LEU 2340.0045
ILE 2350.0084
TYR 2360.0136
SER 2370.0117
ILE 2380.0151
ILE 2390.0130
GLY 2400.0163
VAL 2410.0207
LYS 2420.0194
LYS 2430.0235
GLY 2440.0274
THR 2450.0253
LEU 2460.0261
ALA 2470.0221
TRP 2480.0192
ALA 2490.0152
ARG 2500.0133
THR 2510.0118
GLY 2520.0125
PHE 2530.0100
SER 2540.0144
PRO 2550.0147
ALA 2560.0163
LYS 2570.0195
LYS 2580.0183
LEU 2590.0193
ASN 2600.0211
ALA 2610.0221
GLY 2620.0151
VAL 2630.0142
VAL 2640.0102
ARG 2650.0048
VAL 2660.0042
PHE 2670.0083
PHE 2680.0120
LEU 2690.0156
ASN 2700.0194
GLN 2710.0195
LYS 2720.0274
LYS 2730.0268
ALA 2740.0218
LYS 2750.0323
ASP 2760.0366
VAL 2770.0227
LEU 2780.0233
ARG 2790.0286
LYS 2800.0292
THR 2810.0268
SER 2820.0194
ARG 2830.0423
PRO 2840.0554
MET 2850.0753
VAL 2860.1126
ASP 2870.0476
LEU 2880.0793
THR 2890.0151
PHE 2900.0317
GLY 2910.1278
GLY 2920.1701

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.