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***  TLR_3_simulation  ***

<R2> analysis for 2608260340483950756

---  normal mode 34  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0747
THR 260.0059
LYS 270.0057
CYS 280.0047
THR 290.0045
VAL 300.0061
SER 310.0068
HIS 320.0082
GLU 330.0079
VAL 340.0062
ALA 350.0051
ASP 360.0034
CYS 370.0030
SER 380.0011
HIS 390.0019
LEU 400.0034
LYS 410.0031
LEU 420.0033
THR 430.0035
GLN 440.0038
VAL 450.0037
PRO 460.0052
ASP 470.0064
ASP 480.0074
LEU 490.0069
PRO 500.0080
THR 510.0080
ASN 520.0084
ILE 530.0070
THR 540.0067
VAL 550.0055
LEU 560.0042
ASN 570.0030
LEU 580.0021
THR 590.0010
HIS 600.0010
ASN 610.0020
GLN 620.0025
LEU 630.0017
ARG 640.0017
ARG 650.0009
LEU 660.0011
PRO 670.0017
ALA 680.0018
ALA 690.0031
ASN 700.0038
PHE 710.0038
THR 720.0046
ARG 730.0058
TYR 740.0054
SER 750.0056
GLN 760.0060
LEU 770.0050
THR 780.0054
SER 790.0045
LEU 800.0030
ASP 810.0020
VAL 820.0012
GLY 830.0008
PHE 840.0009
ASN 850.0012
THR 860.0019
ILE 870.0013
SER 880.0021
LYS 890.0019
LEU 900.0016
GLU 910.0015
PRO 920.0025
GLU 930.0020
LEU 940.0020
CYS 950.0032
GLN 960.0030
LYS 970.0029
LEU 980.0036
PRO 990.0046
MET 1000.0053
LEU 1010.0043
LYS 1020.0051
VAL 1030.0041
LEU 1040.0027
ASN 1050.0018
LEU 1060.0010
GLN 1070.0006
HIS 1080.0011
ASN 1090.0015
GLU 1100.0024
LEU 1110.0028
SER 1120.0038
GLN 1130.0047
LEU 1140.0047
SER 1150.0057
ASP 1160.0065
LYS 1170.0058
THR 1180.0044
PHE 1190.0048
ALA 1200.0061
PHE 1210.0054
CYS 1220.0051
THR 1230.0064
ASN 1240.0063
LEU 1250.0053
THR 1260.0056
GLU 1270.0043
LEU 1280.0033
HIS 1290.0020
LEU 1300.0017
MET 1310.0007
SER 1320.0017
ASN 1330.0022
SER 1340.0034
ILE 1350.0038
GLN 1360.0050
LYS 1370.0056
ILE 1380.0056
LYS 1390.0070
ASN 1400.0078
ASN 1410.0074
PRO 1420.0062
PHE 1430.0060
VAL 1440.0075
LYS 1450.0075
GLN 1460.0067
LYS 1470.0079
ASN 1480.0075
LEU 1490.0060
ILE 1500.0059
THR 1510.0045
LEU 1520.0035
ASP 1530.0020
LEU 1540.0017
SER 1550.0006
HIS 1560.0017
ASN 1570.0026
GLY 1580.0039
LEU 1590.0039
SER 1600.0047
SER 1610.0047
THR 1620.0040
LYS 1630.0055
LEU 1640.0055
GLY 1650.0071
THR 1660.0087
GLN 1670.0091
VAL 1680.0087
GLN 1690.0079
LEU 1700.0069
GLU 1710.0079
ASN 1720.0077
LEU 1730.0060
GLN 1740.0056
GLU 1750.0041
LEU 1760.0029
LEU 1770.0016
LEU 1780.0008
SER 1790.0008
ASN 1800.0022
ASN 1810.0026
LYS 1820.0039
ILE 1830.0035
GLN 1840.0046
ALA 1850.0042
LEU 1860.0036
LYS 1870.0048
SER 1880.0051
GLU 1890.0066
GLU 1900.0056
LEU 1910.0050
ASP 1920.0065
ILE 1930.0068
PHE 1940.0060
ALA 1950.0070
ASN 1960.0080
SER 1970.0066
SER 1980.0062
LEU 1990.0046
LYS 2000.0051
LYS 2010.0036
LEU 2020.0022
GLU 2030.0018
LEU 2040.0008
SER 2050.0023
SER 2060.0032
ASN 2070.0028
GLN 2080.0040
ILE 2090.0034
LYS 2100.0046
GLU 2110.0044
PHE 2120.0031
SER 2130.0041
PRO 2140.0039
GLY 2150.0035
CYS 2160.0033
PHE 2170.0022
HIS 2180.0034
ALA 2190.0046
ILE 2200.0044
GLY 2210.0055
ARG 2220.0048
LEU 2230.0033
PHE 2240.0042
GLY 2250.0036
LEU 2260.0025
PHE 2270.0031
LEU 2280.0031
ASN 2290.0044
ASN 2300.0050
VAL 2310.0041
GLN 2320.0048
LEU 2330.0044
GLY 2340.0051
PRO 2350.0049
SER 2360.0051
LEU 2370.0040
THR 2380.0037
GLU 2390.0036
LYS 2400.0028
LEU 2410.0024
CYS 2420.0024
LEU 2430.0017
GLU 2440.0009
LEU 2450.0009
ALA 2460.0006
ASN 2470.0014
THR 2480.0019
SER 2490.0032
ILE 2500.0030
ARG 2510.0044
ASN 2520.0047
LEU 2530.0043
SER 2540.0049
LEU 2550.0051
SER 2560.0060
ASN 2570.0063
SER 2580.0057
GLN 2590.0063
LEU 2600.0061
SER 2610.0064
THR 2620.0062
THR 2630.0057
SER 2640.0054
ASN 2650.0049
THR 2660.0047
THR 2670.0047
PHE 2680.0043
LEU 2690.0038
GLY 2700.0030
LEU 2710.0033
LYS 2720.0032
TRP 2730.0024
THR 2740.0030
ASN 2750.0038
LEU 2760.0047
THR 2770.0055
MET 2780.0059
LEU 2790.0059
ASP 2800.0064
LEU 2810.0066
SER 2820.0072
TYR 2830.0076
ASN 2840.0072
ASN 2850.0076
LEU 2860.0071
ASN 2870.0070
VAL 2880.0065
VAL 2890.0061
GLY 2900.0057
ASN 2910.0052
ASP 2920.0049
SER 2930.0053
PHE 2940.0053
ALA 2950.0048
TRP 2960.0045
LEU 2970.0048
PRO 2980.0048
GLN 2990.0049
LEU 3000.0054
GLU 3010.0059
TYR 3020.0064
PHE 3030.0064
PHE 3040.0069
LEU 3050.0069
GLU 3060.0074
TYR 3070.0078
ASN 3080.0075
ASN 3090.0074
ILE 3100.0068
GLN 3110.0063
HIS 3120.0056
LEU 3130.0053
PHE 3140.0048
SER 3150.0042
HIS 3160.0048
SER 3170.0052
LEU 3180.0052
HIS 3190.0048
GLY 3200.0047
LEU 3210.0051
PHE 3220.0048
ASN 3230.0053
VAL 3240.0057
ARG 3250.0061
TYR 3260.0065
LEU 3270.0063
ASN 3280.0068
LEU 3290.0066
LYS 3300.0071
ARG 3310.0073
SER 3320.0069
PHE 3330.0066
THR 3340.0071
LYS 3350.0075
GLN 3360.0069
SER 3370.0077
ILE 3380.0074
SER 3390.0081
LEU 3400.0078
ALA 3410.0068
SER 3420.0067
LEU 3430.0058
PRO 3440.0055
LYS 3450.0047
ILE 3460.0045
ASP 3470.0039
ASP 3480.0031
PHE 3490.0032
SER 3500.0040
PHE 3510.0043
GLN 3520.0039
TRP 3530.0043
LEU 3540.0049
LYS 3550.0047
CYS 3560.0054
LEU 3570.0055
GLU 3580.0059
HIS 3590.0062
LEU 3600.0057
ASN 3610.0060
MET 3620.0056
GLU 3630.0061
ASP 3640.0065
ASN 3650.0061
ASP 3660.0055
ILE 3670.0045
PRO 3680.0039
GLY 3690.0028
ILE 3700.0022
LYS 3710.0022
SER 3720.0016
ASN 3730.0020
MET 3740.0028
PHE 3750.0033
THR 3760.0029
GLY 3770.0034
LEU 3780.0042
ILE 3790.0046
ASN 3800.0054
LEU 3810.0052
LYS 3820.0058
TYR 3830.0057
LEU 3840.0048
SER 3850.0049
LEU 3860.0041
SER 3870.0046
ASN 3880.0048
SER 3890.0044
PHE 3900.0039
THR 3910.0045
SER 3920.0034
LEU 3930.0023
ARG 3940.0023
THR 3950.0023
LEU 3960.0019
THR 3970.0028
ASN 3980.0036
GLU 3990.0026
THR 4000.0016
PHE 4010.0021
VAL 4020.0025
SER 4030.0026
LEU 4040.0036
ALA 4050.0042
HIS 4060.0042
SER 4070.0045
PRO 4080.0057
LEU 4090.0050
HIS 4100.0057
ILE 4110.0050
LEU 4120.0038
ASN 4130.0035
LEU 4140.0024
THR 4150.0029
LYS 4160.0030
ASN 4170.0027
LYS 4180.0028
ILE 4190.0019
SER 4200.0029
LYS 4210.0032
ILE 4220.0030
GLU 4230.0041
SER 4240.0051
ASP 4250.0050
ALA 4260.0034
PHE 4270.0037
SER 4280.0049
TRP 4290.0047
LEU 4300.0049
GLY 4310.0062
HIS 4320.0065
LEU 4330.0053
GLU 4340.0056
VAL 4350.0045
LEU 4360.0032
ASP 4370.0023
LEU 4380.0009
GLY 4390.0011
LEU 4400.0023
ASN 4410.0023
GLU 4420.0032
ILE 4430.0029
GLY 4440.0043
GLN 4450.0048
GLU 4460.0056
LEU 4470.0051
THR 4480.0063
GLY 4490.0059
GLN 4500.0062
GLU 4510.0048
TRP 4520.0049
ARG 4530.0063
GLY 4540.0067
LEU 4550.0059
GLU 4560.0077
ASN 4570.0074
ILE 4580.0058
PHE 4590.0055
GLU 4600.0040
ILE 4610.0027
TYR 4620.0012
LEU 4630.0008
SER 4640.0012
TYR 4650.0027
ASN 4660.0029
LYS 4670.0043
TYR 4680.0047
LEU 4690.0044
GLN 4700.0057
LEU 4710.0056
THR 4720.0068
ARG 4730.0075
ASN 4740.0072
SER 4750.0057
PHE 4760.0053
ALA 4770.0067
LEU 4780.0066
VAL 4790.0058
PRO 4800.0065
SER 4810.0057
LEU 4820.0044
GLN 4830.0036
ARG 4840.0024
LEU 4850.0018
MET 4860.0007
LEU 4870.0018
ARG 4880.0023
ARG 4890.0037
VAL 4900.0037
ALA 4910.0052
LEU 4920.0049
LYS 4930.0062
ASN 4940.0069
VAL 4950.0059
ASP 4960.0073
SER 4970.0077
SER 4980.0087
PRO 4990.0082
SER 5000.0069
PRO 5010.0056
PHE 5020.0050
GLN 5030.0062
PRO 5040.0063
LEU 5050.0052
ARG 5060.0047
ASN 5070.0043
LEU 5080.0032
THR 5090.0025
ILE 5100.0016
LEU 5110.0018
ASP 5120.0015
LEU 5130.0029
SER 5140.0033
ASN 5150.0046
ASN 5160.0053
ASN 5170.0064
ILE 5180.0064
ALA 5190.0076
ASN 5200.0079
ILE 5210.0068
ASN 5220.0075
ASP 5230.0076
ASP 5240.0073
MET 5250.0062
LEU 5260.0051
GLU 5270.0061
GLY 5280.0061
LEU 5290.0049
GLU 5300.0051
LYS 5310.0042
LEU 5320.0033
GLU 5330.0024
ILE 5340.0015
LEU 5350.0022
ASP 5360.0023
LEU 5370.0036
GLN 5380.0040
HIS 5390.0053
ASN 5400.0060
ASN 5410.0072
LEU 5420.0069
ALA 5430.0074
ARG 5440.0087
LEU 5450.0082
TRP 5460.0077
LYS 5470.0088
HIS 5480.0097
ALA 5490.0108
ASN 5500.0105
PRO 5510.0117
GLY 5520.0116
GLY 5530.0105
PRO 5540.0089
ILE 5550.0080
TYR 5560.0071
PHE 5570.0063
LEU 5580.0055
LYS 5590.0063
GLY 5600.0062
LEU 5610.0047
SER 5620.0047
HIS 5630.0039
LEU 5640.0032
HIS 5650.0022
ILE 5660.0015
LEU 5670.0024
ASN 5680.0027
LEU 5690.0039
GLU 5700.0042
SER 5710.0055
ASN 5720.0060
GLY 5730.0068
PHE 5740.0064
ASP 5750.0071
GLU 5760.0070
ILE 5770.0064
PRO 5780.0072
VAL 5790.0070
GLU 5800.0070
VAL 5810.0057
PHE 5820.0048
LYS 5830.0057
ASP 5840.0054
LEU 5850.0042
PHE 5860.0032
GLU 5870.0028
LEU 5880.0024
LYS 5890.0017
ILE 5900.0018
ILE 5910.0024
ASP 5920.0027
LEU 5930.0037
GLY 5940.0038
LEU 5950.0049
ASN 5960.0056
ASN 5970.0061
LEU 5980.0057
ASN 5990.0059
THR 6000.0066
LEU 6010.0056
PRO 6020.0064
ALA 6030.0065
SER 6040.0062
VAL 6050.0055
PHE 6060.0039
ASN 6070.0046
ASN 6080.0045
GLN 6090.0035
VAL 6100.0037
SER 6110.0031
LEU 6120.0027
LYS 6130.0027
SER 6140.0026
LEU 6150.0024
ASN 6160.0027
LEU 6170.0031
GLN 6180.0033
LYS 6190.0041
ASN 6200.0046
LEU 6210.0054
ILE 6220.0050
THR 6230.0055
SER 6240.0062
VAL 6250.0058
GLU 6260.0063
LYS 6270.0065
LYS 6280.0068
VAL 6290.0055
PHE 6300.0048
GLY 6310.0051
PRO 6320.0048
ALA 6330.0041
PHE 6340.0045
ARG 6350.0050
ASN 6360.0046
LEU 6370.0041
THR 6380.0046
GLU 6390.0042
LEU 6400.0037
ASP 6410.0033
MET 6420.0030
ARG 6430.0030
PHE 6440.0032
ASN 6450.0036
PRO 6460.0048
PHE 6470.0053
ASP 6480.0070
CYS 6490.0077
THR 6500.0096
CYS 6510.0106
GLU 6520.0105
SER 6530.0084
ILE 6540.0076
ALA 6550.0093
TRP 6560.0081
PHE 6570.0067
VAL 6580.0076
ASN 6590.0087
TRP 6600.0076
ILE 6610.0071
ASN 6620.0087
GLU 6630.0088
THR 6640.0077
HIS 6650.0082
THR 6660.0063
ASN 6670.0062
ILE 6680.0053
PRO 6690.0056
GLU 6700.0055
LEU 6710.0055
SER 6720.0059
SER 6730.0048
HIS 6740.0037
TYR 6750.0038
LEU 6760.0041
CYS 6770.0053
ASN 6780.0056
THR 6790.0074
PRO 6800.0087
PRO 6810.0083
HIS 6820.0088
TYR 6830.0076
HIS 6840.0060
GLY 6850.0046
PHE 6860.0057
PRO 6870.0057
VAL 6880.0062
ARG 6890.0074
LEU 6900.0083
PHE 6910.0089
ASP 6920.0112
THR 6930.0120
SER 6940.0143
SER 6950.0144
CYS 6960.0138
GLU 10.0096
ALA 20.0106
ALA 30.0098
ALA 40.0088
LYS 50.0096
MET 60.0099
GLN 70.0090
ARG 80.0086
LEU 90.0097
VAL 100.0098
LEU 110.0087
LEU 120.0089
LEU 130.0097
ALA 140.0094
ILE 150.0089
SER 160.0093
LEU 170.0085
LEU 180.0089
LEU 190.0093
TYR 200.0085
GLN 210.0068
ASP 220.0089
LEU 230.0105
PRO 240.0098
VAL 250.0087
ARG 260.0132
SER 270.0144
GLU 280.0124
PHE 290.0133
GLU 300.0153
LEU 310.0138
ASP 320.0103
ARG 330.0093
ILE 340.0102
CYS 350.0089
GLY 360.0102
TYR 370.0134
GLY 380.0119
THR 390.0088
ALA 400.0062
ARG 410.0056
CYS 420.0049
ARG 430.0031
LYS 440.0026
LYS 450.0025
CYS 460.0020
ARG 470.0034
SER 480.0054
GLN 490.0032
GLU 500.0023
TYR 510.0047
ARG 520.0045
ILE 530.0066
GLY 540.0063
ARG 550.0050
CYS 560.0059
PRO 570.0073
ASN 580.0055
THR 590.0035
TYR 600.0022
ALA 610.0019
CYS 620.0040
CYS 630.0027
LEU 640.0043
ARG 650.0029
LYS 660.0064
TRP 670.0077
ASP 680.0039
GLU 690.0056
SER 700.0017
LEU 710.0053
LEU 720.0063
ASN 730.0032
ARG 740.0018
THR 750.0037
LYS 760.0061
PRO 770.0085
GLU 780.0167
ALA 790.0202
ALA 800.0140
ALA 810.0154
LYS 820.0158
LYS 830.0157
GLU 840.0111
MET 850.0126
ASN 860.0045
LEU 870.0017
SER 880.0047
VAL 890.0080
GLY 900.0126
LEU 910.0191
GLY 920.0244
GLY 930.0326
GLY 940.0301
SER 950.0262
ASN 960.0173
LEU 970.0140
SER 980.0076
VAL 990.0074
GLY 1000.0062
LEU 1010.0148
GLY 1020.0266
GLU 1030.0378
ILE 1040.0512
GLY 1050.0643
GLY 1060.0747
GLY 1070.0591
SER 1080.0430
LYS 1090.0293
LEU 1100.0168
LEU 1110.0101
ASP 1120.0123
ILE 1130.0113
ASN 1140.0176
LEU 1150.0192
GLY 1160.0234
ARG 1170.0272
GLY 1180.0267
GLY 1190.0254
GLY 1200.0219
SER 1210.0173
MET 1220.0124
VAL 1230.0092
ASP 1240.0047
LEU 1250.0013
THR 1260.0032
PHE 1270.0055
GLY 1280.0080
GLY 1290.0099
VAL 1300.0122
GLY 1310.0096
GLY 1320.0103
GLY 1330.0086
SER 1340.0090
THR 1350.0078
PHE 1360.0093
THR 1370.0109
PHE 1380.0092
PHE 1390.0120
PRO 1400.0124
LEU 1410.0142
VAL 1420.0181
ILE 1430.0181
GLY 1440.0228
GLY 1450.0248
GLY 1460.0251
SER 1470.0226
ASP 1480.0190
ALA 1490.0162
MET 1500.0119
TYR 1510.0082
LEU 1520.0055
GLY 1530.0079
PHE 1540.0087
ALA 1550.0133
ALA 1560.0142
GLY 1570.0122
GLY 1580.0097
GLY 1590.0059
SER 1600.0026
ALA 1610.0064
GLY 1620.0053
GLY 1630.0043
GLU 1640.0053
ASN 1650.0047
HIS 1660.0024
VAL 1670.0038
ALA 1680.0048
PHE 1690.0087
GLY 1700.0107
PRO 1710.0166
GLY 1720.0152
PRO 1730.0173
GLY 1740.0133
VAL 1750.0108
ASP 1760.0074
LEU 1770.0074
THR 1780.0058
PHE 1790.0078
GLY 1800.0083
GLY 1810.0081
VAL 1820.0098
GLN 1830.0087
PHE 1840.0112
ALA 1850.0119
MET 1860.0169
VAL 1870.0193
ASN 1880.0211
ASN 1890.0239
GLY 1900.0255
PRO 1910.0129
GLY 1920.0243
PRO 1930.0457
GLY 1940.0456
GLU 1950.0225
SER 1960.0166
PHE 1970.0254
THR 1980.0279
ALA 1990.0379
GLN 2000.0446
PRO 2010.0339
ALA 2020.0269
ASP 2030.0325
MET 2040.0289
GLN 2050.0196
ALA 2060.0378
GLY 2070.0333
ILE 2080.0246
LYS 2090.0210
GLY 2100.0125
PRO 2110.0040
GLY 2120.0033
PRO 2130.0036
GLY 2140.0045
GLY 2150.0060
SER 2160.0044
ILE 2170.0099
GLN 2180.0106
VAL 2190.0183
ILE 2200.0202
ASN 2210.0195
GLY 2220.0141
SER 2230.0150
THR 2240.0113
ILE 2250.0062
GLY 2260.0088
THR 2270.0116
GLY 2280.0130
SER 2290.0129
LYS 2300.0068
LYS 2310.0021
THR 2320.0076
ILE 2330.0155
LEU 2340.0233
ILE 2350.0305
TYR 2360.0401
SER 2370.0353
ILE 2380.0416
ILE 2390.0355
GLY 2400.0413
VAL 2410.0498
LYS 2420.0471
LYS 2430.0533
GLY 2440.0627
THR 2450.0610
LEU 2460.0620
ALA 2470.0532
TRP 2480.0476
ALA 2490.0374
ARG 2500.0317
THR 2510.0229
GLY 2520.0203
PHE 2530.0150
SER 2540.0134
PRO 2550.0090
ALA 2560.0063
LYS 2570.0049
LYS 2580.0053
LEU 2590.0072
ASN 2600.0106
ALA 2610.0132
GLY 2620.0078
VAL 2630.0076
VAL 2640.0089
ARG 2650.0138
VAL 2660.0125
PHE 2670.0105
PHE 2680.0063
LEU 2690.0058
ASN 2700.0009
GLN 2710.0046
LYS 2720.0042
LYS 2730.0006
ALA 2740.0055
LYS 2750.0070
ASP 2760.0070
VAL 2770.0073
LEU 2780.0092
ARG 2790.0122
LYS 2800.0122
THR 2810.0129
SER 2820.0133
ARG 2830.0106
PRO 2840.0124
MET 2850.0237
VAL 2860.0299
ASP 2870.0077
LEU 2880.0299
THR 2890.0127
PHE 2900.0136
GLY 2910.0451
GLY 2920.0569

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.