CNRS Nantes University US2B US2B
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***  TLR_3_simulation  ***

<R2> analysis for 2608260340483950756

---  normal mode 35  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0522
THR 260.0066
LYS 270.0061
CYS 280.0054
THR 290.0046
VAL 300.0056
SER 310.0056
HIS 320.0078
GLU 330.0092
VAL 340.0089
ALA 350.0076
ASP 360.0072
CYS 370.0072
SER 380.0069
HIS 390.0063
LEU 400.0064
LYS 410.0078
LEU 420.0086
THR 430.0089
GLN 440.0097
VAL 450.0099
PRO 460.0109
ASP 470.0123
ASP 480.0129
LEU 490.0120
PRO 500.0128
THR 510.0138
ASN 520.0134
ILE 530.0118
THR 540.0115
VAL 550.0099
LEU 560.0095
ASN 570.0088
LEU 580.0087
THR 590.0082
HIS 600.0078
ASN 610.0080
GLN 620.0082
LEU 630.0079
ARG 640.0076
ARG 650.0075
LEU 660.0080
PRO 670.0089
ALA 680.0090
ALA 690.0107
ASN 700.0111
PHE 710.0108
THR 720.0122
ARG 730.0131
TYR 740.0119
SER 750.0123
GLN 760.0125
LEU 770.0109
THR 780.0103
SER 790.0090
LEU 800.0083
ASP 810.0078
VAL 820.0076
GLY 830.0068
PHE 840.0067
ASN 850.0073
THR 860.0070
ILE 870.0064
SER 880.0059
LYS 890.0055
LEU 900.0052
GLU 910.0055
PRO 920.0045
GLU 930.0062
LEU 940.0070
CYS 950.0063
GLN 960.0077
LYS 970.0091
LEU 980.0090
PRO 990.0092
MET 1000.0098
LEU 1010.0077
LYS 1020.0077
VAL 1030.0072
LEU 1040.0057
ASN 1050.0054
LEU 1060.0047
GLN 1070.0044
HIS 1080.0047
ASN 1090.0053
GLU 1100.0054
LEU 1110.0044
SER 1120.0045
GLN 1130.0046
LEU 1140.0034
SER 1150.0038
ASP 1160.0037
LYS 1170.0026
THR 1180.0023
PHE 1190.0025
ALA 1200.0028
PHE 1210.0034
CYS 1220.0042
THR 1230.0055
ASN 1240.0067
LEU 1250.0057
THR 1260.0068
GLU 1270.0060
LEU 1280.0041
HIS 1290.0037
LEU 1300.0024
MET 1310.0029
SER 1320.0031
ASN 1330.0034
SER 1340.0040
ILE 1350.0038
GLN 1360.0051
LYS 1370.0058
ILE 1380.0055
LYS 1390.0068
ASN 1400.0073
ASN 1410.0063
PRO 1420.0044
PHE 1430.0049
VAL 1440.0063
LYS 1450.0056
GLN 1460.0054
LYS 1470.0073
ASN 1480.0075
LEU 1490.0064
ILE 1500.0074
THR 1510.0061
LEU 1520.0047
ASP 1530.0038
LEU 1540.0030
SER 1550.0027
HIS 1560.0025
ASN 1570.0029
GLY 1580.0040
LEU 1590.0045
SER 1600.0056
SER 1610.0065
THR 1620.0065
LYS 1630.0074
LEU 1640.0068
GLY 1650.0080
THR 1660.0096
GLN 1670.0100
VAL 1680.0102
GLN 1690.0088
LEU 1700.0080
GLU 1710.0093
ASN 1720.0090
LEU 1730.0078
GLN 1740.0080
GLU 1750.0066
LEU 1760.0059
LEU 1770.0048
LEU 1780.0045
SER 1790.0038
ASN 1800.0031
ASN 1810.0037
LYS 1820.0043
ILE 1830.0048
GLN 1840.0053
ALA 1850.0059
LEU 1860.0065
LYS 1870.0078
SER 1880.0087
GLU 1890.0095
GLU 1900.0085
LEU 1910.0085
ASP 1920.0098
ILE 1930.0094
PHE 1940.0092
ALA 1950.0105
ASN 1960.0108
SER 1970.0097
SER 1980.0093
LEU 1990.0081
LYS 2000.0077
LYS 2010.0065
LEU 2020.0062
GLU 2030.0052
LEU 2040.0050
SER 2050.0041
SER 2060.0038
ASN 2070.0044
GLN 2080.0043
ILE 2090.0046
LYS 2100.0047
GLU 2110.0052
PHE 2120.0054
SER 2130.0066
PRO 2140.0070
GLY 2150.0077
CYS 2160.0075
PHE 2170.0072
HIS 2180.0081
ALA 2190.0089
ILE 2200.0088
GLY 2210.0096
ARG 2220.0088
LEU 2230.0077
PHE 2240.0073
GLY 2250.0064
LEU 2260.0053
PHE 2270.0049
LEU 2280.0045
ASN 2290.0040
ASN 2300.0040
VAL 2310.0045
GLN 2320.0046
LEU 2330.0039
GLY 2340.0039
PRO 2350.0037
SER 2360.0039
LEU 2370.0037
THR 2380.0030
GLU 2390.0030
LYS 2400.0032
LEU 2410.0035
CYS 2420.0032
LEU 2430.0033
GLU 2440.0045
LEU 2450.0048
ALA 2460.0043
ASN 2470.0052
THR 2480.0058
SER 2490.0064
ILE 2500.0057
ARG 2510.0055
ASN 2520.0053
LEU 2530.0041
SER 2540.0039
LEU 2550.0031
SER 2560.0032
ASN 2570.0039
SER 2580.0038
GLN 2590.0044
LEU 2600.0039
SER 2610.0057
THR 2620.0059
THR 2630.0055
SER 2640.0067
ASN 2650.0074
THR 2660.0053
THR 2670.0042
PHE 2680.0039
LEU 2690.0045
GLY 2700.0037
LEU 2710.0038
LYS 2720.0046
TRP 2730.0044
THR 2740.0049
ASN 2750.0061
LEU 2760.0051
THR 2770.0064
MET 2780.0054
LEU 2790.0037
ASP 2800.0033
LEU 2810.0021
SER 2820.0025
TYR 2830.0035
ASN 2840.0036
ASN 2850.0047
LEU 2860.0049
ASN 2870.0064
VAL 2880.0072
VAL 2890.0066
GLY 2900.0083
ASN 2910.0094
ASP 2920.0092
SER 2930.0072
PHE 2940.0067
ALA 2950.0088
TRP 2960.0070
LEU 2970.0068
PRO 2980.0086
GLN 2990.0085
LEU 3000.0072
GLU 3010.0085
TYR 3020.0071
PHE 3030.0051
PHE 3040.0038
LEU 3050.0023
GLU 3060.0021
TYR 3070.0031
ASN 3080.0034
ASN 3090.0050
ILE 3100.0052
GLN 3110.0074
HIS 3120.0079
LEU 3130.0072
PHE 3140.0092
SER 3150.0102
HIS 3160.0106
SER 3170.0083
LEU 3180.0079
HIS 3190.0100
GLY 3200.0106
LEU 3210.0093
PHE 3220.0115
ASN 3230.0113
VAL 3240.0092
ARG 3250.0100
TYR 3260.0081
LEU 3270.0059
ASN 3280.0043
LEU 3290.0023
LYS 3300.0025
ARG 3310.0027
SER 3320.0022
PHE 3330.0039
THR 3340.0059
LYS 3350.0067
GLN 3360.0089
SER 3370.0116
ILE 3380.0133
SER 3390.0158
LEU 3400.0150
ALA 3410.0121
SER 3420.0108
LEU 3430.0084
PRO 3440.0067
LYS 3450.0076
ILE 3460.0070
ASP 3470.0092
ASP 3480.0102
PHE 3490.0107
SER 3500.0090
PHE 3510.0088
GLN 3520.0114
TRP 3530.0115
LEU 3540.0104
LYS 3550.0128
CYS 3560.0129
LEU 3570.0106
GLU 3580.0112
HIS 3590.0093
LEU 3600.0069
ASN 3610.0050
MET 3620.0028
GLU 3630.0034
ASP 3640.0039
ASN 3650.0030
ASP 3660.0041
ILE 3670.0034
PRO 3680.0049
GLY 3690.0039
ILE 3700.0043
LYS 3710.0070
SER 3720.0086
ASN 3730.0096
MET 3740.0075
PHE 3750.0080
THR 3760.0107
GLY 3770.0123
LEU 3780.0112
ILE 3790.0137
ASN 3800.0135
LEU 3810.0112
LYS 3820.0117
TYR 3830.0100
LEU 3840.0074
SER 3850.0062
LEU 3860.0040
SER 3870.0051
ASN 3880.0045
SER 3890.0023
PHE 3900.0023
THR 3910.0043
SER 3920.0043
LEU 3930.0026
ARG 3940.0035
THR 3950.0022
LEU 3960.0015
THR 3970.0027
ASN 3980.0038
GLU 3990.0055
THR 4000.0042
PHE 4010.0055
VAL 4020.0077
SER 4030.0084
LEU 4040.0085
ALA 4050.0102
HIS 4060.0123
SER 4070.0113
PRO 4080.0128
LEU 4090.0107
HIS 4100.0117
ILE 4110.0101
LEU 4120.0078
ASN 4130.0074
LEU 4140.0054
THR 4150.0068
LYS 4160.0062
ASN 4170.0043
LYS 4180.0053
ILE 4190.0040
SER 4200.0047
LYS 4210.0033
ILE 4220.0023
GLU 4230.0016
SER 4240.0018
ASP 4250.0033
ALA 4260.0031
PHE 4270.0050
SER 4280.0064
TRP 4290.0075
LEU 4300.0081
GLY 4310.0096
HIS 4320.0111
LEU 4330.0096
GLU 4340.0111
VAL 4350.0104
LEU 4360.0084
ASP 4370.0086
LEU 4380.0071
GLY 4390.0087
LEU 4400.0093
ASN 4410.0074
GLU 4420.0072
ILE 4430.0062
GLY 4440.0066
GLN 4450.0053
GLU 4460.0051
LEU 4470.0048
THR 4480.0036
GLY 4490.0041
GLN 4500.0032
GLU 4510.0032
TRP 4520.0049
ARG 4530.0049
GLY 4540.0066
LEU 4550.0074
GLU 4560.0087
ASN 4570.0100
ILE 4580.0093
PHE 4590.0109
GLU 4600.0104
ILE 4610.0092
TYR 4620.0100
LEU 4630.0090
SER 4640.0107
TYR 4650.0112
ASN 4660.0089
LYS 4670.0090
TYR 4680.0082
LEU 4690.0073
GLN 4700.0065
LEU 4710.0065
THR 4720.0055
ARG 4730.0052
ASN 4740.0048
SER 4750.0056
PHE 4760.0061
ALA 4770.0054
LEU 4780.0054
VAL 4790.0067
PRO 4800.0072
SER 4810.0087
LEU 4820.0090
GLN 4830.0104
ARG 4840.0108
LEU 4850.0100
MET 4860.0109
LEU 4870.0104
ARG 4880.0119
ARG 4890.0121
VAL 4900.0107
ALA 4910.0104
LEU 4920.0092
LYS 4930.0083
ASN 4940.0071
VAL 4950.0078
ASP 4960.0062
SER 4970.0058
SER 4980.0050
PRO 4990.0050
SER 5000.0057
PRO 5010.0064
PHE 5020.0069
GLN 5030.0061
PRO 5040.0062
LEU 5050.0073
ARG 5060.0067
ASN 5070.0083
LEU 5080.0087
THR 5090.0100
ILE 5100.0108
LEU 5110.0104
ASP 5120.0113
LEU 5130.0108
SER 5140.0120
ASN 5150.0128
ASN 5160.0122
ASN 5170.0114
ILE 5180.0098
ALA 5190.0088
ASN 5200.0074
ILE 5210.0066
ASN 5220.0052
ASP 5230.0037
ASP 5240.0038
MET 5250.0054
LEU 5260.0053
GLU 5270.0042
GLY 5280.0049
LEU 5290.0061
GLU 5300.0062
LYS 5310.0081
LEU 5320.0082
GLU 5330.0095
ILE 5340.0101
LEU 5350.0092
ASP 5360.0106
LEU 5370.0099
GLN 5380.0112
HIS 5390.0123
ASN 5400.0114
ASN 5410.0107
LEU 5420.0083
ALA 5430.0078
ARG 5440.0087
LEU 5450.0068
TRP 5460.0057
LYS 5470.0076
HIS 5480.0082
ALA 5490.0107
ASN 5500.0100
PRO 5510.0113
GLY 5520.0095
GLY 5530.0078
PRO 5540.0055
ILE 5550.0042
TYR 5560.0026
PHE 5570.0035
LEU 5580.0032
LYS 5590.0020
GLY 5600.0036
LEU 5610.0050
SER 5620.0062
HIS 5630.0081
LEU 5640.0074
HIS 5650.0088
ILE 5660.0098
LEU 5670.0081
ASN 5680.0092
LEU 5690.0082
GLU 5700.0098
SER 5710.0111
ASN 5720.0100
GLY 5730.0099
PHE 5740.0072
ASP 5750.0072
GLU 5760.0057
ILE 5770.0035
PRO 5780.0043
VAL 5790.0044
GLU 5800.0037
VAL 5810.0013
PHE 5820.0024
LYS 5830.0040
ASP 5840.0046
LEU 5850.0052
PHE 5860.0077
GLU 5870.0092
LEU 5880.0076
LYS 5890.0095
ILE 5900.0088
ILE 5910.0072
ASP 5920.0081
LEU 5930.0064
GLY 5940.0083
LEU 5950.0101
ASN 5960.0090
ASN 5970.0089
LEU 5980.0057
ASN 5990.0056
THR 6000.0063
LEU 6010.0046
PRO 6020.0070
ALA 6030.0085
SER 6040.0083
VAL 6050.0051
PHE 6060.0059
ASN 6070.0087
ASN 6080.0082
GLN 6090.0082
VAL 6100.0113
SER 6110.0120
LEU 6120.0102
LYS 6130.0123
SER 6140.0106
LEU 6150.0075
ASN 6160.0078
LEU 6170.0054
GLN 6180.0080
LYS 6190.0091
ASN 6200.0073
LEU 6210.0073
ILE 6220.0040
THR 6230.0050
SER 6240.0056
VAL 6250.0051
GLU 6260.0085
LYS 6270.0106
LYS 6280.0110
VAL 6290.0075
PHE 6300.0074
GLY 6310.0111
PRO 6320.0115
ALA 6330.0091
PHE 6340.0108
ARG 6350.0144
ASN 6360.0152
LEU 6370.0134
THR 6380.0156
GLU 6390.0134
LEU 6400.0100
ASP 6410.0092
MET 6420.0058
ARG 6430.0079
PHE 6440.0082
ASN 6450.0053
PRO 6460.0061
PHE 6470.0030
ASP 6480.0060
CYS 6490.0061
THR 6500.0102
CYS 6510.0129
GLU 6520.0135
SER 6530.0093
ILE 6540.0075
ALA 6550.0114
TRP 6560.0112
PHE 6570.0084
VAL 6580.0095
ASN 6590.0130
TRP 6600.0126
ILE 6610.0119
ASN 6620.0138
GLU 6630.0151
THR 6640.0146
HIS 6650.0159
THR 6660.0157
ASN 6670.0159
ILE 6680.0130
PRO 6690.0144
GLU 6700.0135
LEU 6710.0114
SER 6720.0111
SER 6730.0115
HIS 6740.0097
TYR 6750.0061
LEU 6760.0045
CYS 6770.0024
ASN 6780.0067
THR 6790.0089
PRO 6800.0099
PRO 6810.0104
HIS 6820.0081
TYR 6830.0046
HIS 6840.0061
GLY 6850.0057
PHE 6860.0024
PRO 6870.0048
VAL 6880.0044
ARG 6890.0084
LEU 6900.0081
PHE 6910.0079
ASP 6920.0121
THR 6930.0151
SER 6940.0191
SER 6950.0185
CYS 6960.0188
GLU 10.0164
ALA 20.0162
ALA 30.0161
ALA 40.0136
LYS 50.0122
MET 60.0126
GLN 70.0116
ARG 80.0093
LEU 90.0095
VAL 100.0105
LEU 110.0076
LEU 120.0063
LEU 130.0075
ALA 140.0079
ILE 150.0060
SER 160.0042
LEU 170.0052
LEU 180.0069
LEU 190.0055
TYR 200.0048
GLN 210.0060
ASP 220.0083
LEU 230.0077
PRO 240.0100
VAL 250.0079
ARG 260.0110
SER 270.0102
GLU 280.0099
PHE 290.0074
GLU 300.0090
LEU 310.0135
ASP 320.0117
ARG 330.0112
ILE 340.0153
CYS 350.0171
GLY 360.0218
TYR 370.0273
GLY 380.0248
THR 390.0244
ALA 400.0177
ARG 410.0129
CYS 420.0101
ARG 430.0070
LYS 440.0039
LYS 450.0039
CYS 460.0061
ARG 470.0100
SER 480.0125
GLN 490.0156
GLU 500.0127
TYR 510.0095
ARG 520.0081
ILE 530.0121
GLY 540.0122
ARG 550.0115
CYS 560.0112
PRO 570.0125
ASN 580.0096
THR 590.0091
TYR 600.0069
ALA 610.0069
CYS 620.0109
CYS 630.0109
LEU 640.0147
ARG 650.0166
LYS 660.0218
TRP 670.0226
ASP 680.0198
GLU 690.0261
SER 700.0214
LEU 710.0179
LEU 720.0255
ASN 730.0251
ARG 740.0159
THR 750.0174
LYS 760.0222
PRO 770.0132
GLU 780.0281
ALA 790.0291
ALA 800.0163
ALA 810.0144
LYS 820.0094
LYS 830.0119
GLU 840.0087
MET 850.0112
ASN 860.0097
LEU 870.0103
SER 880.0107
VAL 890.0116
GLY 900.0124
LEU 910.0135
GLY 920.0153
GLY 930.0156
GLY 940.0135
SER 950.0128
ASN 960.0101
LEU 970.0097
SER 980.0084
VAL 990.0083
GLY 1000.0071
LEU 1010.0049
GLY 1020.0079
GLU 1030.0152
ILE 1040.0229
GLY 1050.0307
GLY 1060.0409
GLY 1070.0312
SER 1080.0236
LYS 1090.0138
LEU 1100.0061
LEU 1110.0075
ASP 1120.0091
ILE 1130.0097
ASN 1140.0120
LEU 1150.0133
GLY 1160.0164
ARG 1170.0179
GLY 1180.0181
GLY 1190.0182
GLY 1200.0176
SER 1210.0149
MET 1220.0138
VAL 1230.0136
ASP 1240.0132
LEU 1250.0136
THR 1260.0146
PHE 1270.0162
GLY 1280.0175
GLY 1290.0183
VAL 1300.0202
GLY 1310.0212
GLY 1320.0214
GLY 1330.0183
SER 1340.0189
THR 1350.0162
PHE 1360.0176
THR 1370.0177
PHE 1380.0148
PHE 1390.0159
PRO 1400.0133
LEU 1410.0134
VAL 1420.0134
ILE 1430.0108
GLY 1440.0111
GLY 1450.0103
GLY 1460.0111
SER 1470.0118
ASP 1480.0128
ALA 1490.0121
MET 1500.0108
TYR 1510.0125
LEU 1520.0133
GLY 1530.0161
PHE 1540.0174
ALA 1550.0204
ALA 1560.0241
GLY 1570.0201
GLY 1580.0168
GLY 1590.0125
SER 1600.0108
ALA 1610.0135
GLY 1620.0137
GLY 1630.0136
GLU 1640.0147
ASN 1650.0145
HIS 1660.0130
VAL 1670.0124
ALA 1680.0113
PHE 1690.0112
GLY 1700.0113
PRO 1710.0140
GLY 1720.0142
PRO 1730.0141
GLY 1740.0140
VAL 1750.0125
ASP 1760.0110
LEU 1770.0123
THR 1780.0115
PHE 1790.0135
GLY 1800.0126
GLY 1810.0105
VAL 1820.0129
GLN 1830.0129
PHE 1840.0160
ALA 1850.0174
MET 1860.0219
VAL 1870.0314
ASN 1880.0325
ASN 1890.0459
GLY 1900.0460
PRO 1910.0355
GLY 1920.0507
PRO 1930.0522
GLY 1940.0300
GLU 1950.0084
SER 1960.0349
PHE 1970.0298
THR 1980.0179
ALA 1990.0199
GLN 2000.0134
PRO 2010.0216
ALA 2020.0183
ASP 2030.0093
MET 2040.0137
GLN 2050.0163
ALA 2060.0076
GLY 2070.0059
ILE 2080.0029
LYS 2090.0078
GLY 2100.0101
PRO 2110.0112
GLY 2120.0097
PRO 2130.0062
GLY 2140.0066
GLY 2150.0085
SER 2160.0114
ILE 2170.0143
GLN 2180.0189
VAL 2190.0257
ILE 2200.0327
ASN 2210.0270
GLY 2220.0212
SER 2230.0122
THR 2240.0102
ILE 2250.0035
GLY 2260.0091
THR 2270.0117
GLY 2280.0101
SER 2290.0100
LYS 2300.0061
LYS 2310.0065
THR 2320.0071
ILE 2330.0093
LEU 2340.0112
ILE 2350.0147
TYR 2360.0161
SER 2370.0201
ILE 2380.0235
ILE 2390.0264
GLY 2400.0305
VAL 2410.0313
LYS 2420.0326
LYS 2430.0298
GLY 2440.0238
THR 2450.0250
LEU 2460.0225
ALA 2470.0241
TRP 2480.0208
ALA 2490.0237
ARG 2500.0207
THR 2510.0199
GLY 2520.0187
PHE 2530.0174
SER 2540.0169
PRO 2550.0144
ALA 2560.0163
LYS 2570.0163
LYS 2580.0138
LEU 2590.0177
ASN 2600.0196
ALA 2610.0198
GLY 2620.0110
VAL 2630.0128
VAL 2640.0038
ARG 2650.0113
VAL 2660.0103
PHE 2670.0097
PHE 2680.0093
LEU 2690.0108
ASN 2700.0118
GLN 2710.0196
LYS 2720.0242
LYS 2730.0184
ALA 2740.0150
LYS 2750.0218
ASP 2760.0184
VAL 2770.0092
LEU 2780.0137
ARG 2790.0146
LYS 2800.0063
THR 2810.0126
SER 2820.0231
ARG 2830.0156
PRO 2840.0229
MET 2850.0229
VAL 2860.0130
ASP 2870.0148
LEU 2880.0138
THR 2890.0130
PHE 2900.0074
GLY 2910.0036
GLY 2920.0123

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elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.