CNRS Nantes University US2B US2B
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***  TLR_3_simulation  ***

<R2> analysis for 2608260340483950756

---  normal mode 36  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0445
THR 260.0099
LYS 270.0085
CYS 280.0058
THR 290.0065
VAL 300.0102
SER 310.0144
HIS 320.0166
GLU 330.0130
VAL 340.0105
ALA 350.0068
ASP 360.0041
CYS 370.0011
SER 380.0036
HIS 390.0067
LEU 400.0065
LYS 410.0052
LEU 420.0037
THR 430.0038
GLN 440.0027
VAL 450.0016
PRO 460.0035
ASP 470.0052
ASP 480.0067
LEU 490.0064
PRO 500.0083
THR 510.0080
ASN 520.0096
ILE 530.0080
THR 540.0086
VAL 550.0076
LEU 560.0051
ASN 570.0042
LEU 580.0027
THR 590.0048
HIS 600.0060
ASN 610.0038
GLN 620.0042
LEU 630.0029
ARG 640.0034
ARG 650.0027
LEU 660.0023
PRO 670.0016
ALA 680.0020
ALA 690.0009
ASN 700.0014
PHE 710.0019
THR 720.0026
ARG 730.0042
TYR 740.0045
SER 750.0053
GLN 760.0059
LEU 770.0052
THR 780.0068
SER 790.0060
LEU 800.0042
ASP 810.0037
VAL 820.0033
GLY 830.0041
PHE 840.0043
ASN 850.0039
THR 860.0037
ILE 870.0038
SER 880.0045
LYS 890.0047
LEU 900.0046
GLU 910.0048
PRO 920.0058
GLU 930.0054
LEU 940.0045
CYS 950.0056
GLN 960.0054
LYS 970.0045
LEU 980.0048
PRO 990.0061
MET 1000.0063
LEU 1010.0059
LYS 1020.0062
VAL 1030.0050
LEU 1040.0044
ASN 1050.0034
LEU 1060.0033
GLN 1070.0028
HIS 1080.0029
ASN 1090.0034
GLU 1100.0043
LEU 1110.0048
SER 1120.0055
GLN 1130.0066
LEU 1140.0064
SER 1150.0077
ASP 1160.0085
LYS 1170.0085
THR 1180.0069
PHE 1190.0067
ALA 1200.0083
PHE 1210.0081
CYS 1220.0072
THR 1230.0081
ASN 1240.0076
LEU 1250.0064
THR 1260.0057
GLU 1270.0043
LEU 1280.0036
HIS 1290.0023
LEU 1300.0026
MET 1310.0019
SER 1320.0027
ASN 1330.0035
SER 1340.0046
ILE 1350.0048
GLN 1360.0062
LYS 1370.0065
ILE 1380.0061
LYS 1390.0077
ASN 1400.0084
ASN 1410.0078
PRO 1420.0069
PHE 1430.0062
VAL 1440.0077
LYS 1450.0083
GLN 1460.0071
LYS 1470.0080
ASN 1480.0077
LEU 1490.0058
ILE 1500.0053
THR 1510.0037
LEU 1520.0024
ASP 1530.0011
LEU 1540.0012
SER 1550.0021
HIS 1560.0035
ASN 1570.0037
GLY 1580.0052
LEU 1590.0045
SER 1600.0055
SER 1610.0048
THR 1620.0029
LYS 1630.0039
LEU 1640.0040
GLY 1650.0057
THR 1660.0074
GLN 1670.0074
VAL 1680.0065
GLN 1690.0062
LEU 1700.0054
GLU 1710.0063
ASN 1720.0067
LEU 1730.0047
GLN 1740.0050
GLU 1750.0039
LEU 1760.0024
LEU 1770.0027
LEU 1780.0025
SER 1790.0043
ASN 1800.0055
ASN 1810.0049
LYS 1820.0061
ILE 1830.0052
GLN 1840.0066
ALA 1850.0055
LEU 1860.0045
LYS 1870.0041
SER 1880.0027
GLU 1890.0039
GLU 1900.0031
LEU 1910.0019
ASP 1920.0029
ILE 1930.0037
PHE 1940.0028
ALA 1950.0035
ASN 1960.0053
SER 1970.0043
SER 1980.0051
LEU 1990.0043
LYS 2000.0063
LYS 2010.0059
LEU 2020.0047
GLU 2030.0056
LEU 2040.0055
SER 2050.0071
SER 2060.0077
ASN 2070.0067
GLN 2080.0078
ILE 2090.0067
LYS 2100.0077
GLU 2110.0067
PHE 2120.0053
SER 2130.0047
PRO 2140.0042
GLY 2150.0026
CYS 2160.0029
PHE 2170.0027
HIS 2180.0015
ALA 2190.0002
ILE 2200.0016
GLY 2210.0026
ARG 2220.0040
LEU 2230.0045
PHE 2240.0066
GLY 2250.0073
LEU 2260.0072
PHE 2270.0084
LEU 2280.0086
ASN 2290.0101
ASN 2300.0109
VAL 2310.0096
GLN 2320.0100
LEU 2330.0089
GLY 2340.0092
PRO 2350.0084
SER 2360.0084
LEU 2370.0077
THR 2380.0076
GLU 2390.0070
LYS 2400.0062
LEU 2410.0067
CYS 2420.0065
LEU 2430.0055
GLU 2440.0049
LEU 2450.0052
ALA 2460.0050
ASN 2470.0041
THR 2480.0046
SER 2490.0057
ILE 2500.0068
ARG 2510.0084
ASN 2520.0093
LEU 2530.0092
SER 2540.0103
LEU 2550.0105
SER 2560.0118
ASN 2570.0124
SER 2580.0114
GLN 2590.0118
LEU 2600.0107
SER 2610.0108
THR 2620.0093
THR 2630.0080
SER 2640.0067
ASN 2650.0053
THR 2660.0064
THR 2670.0074
PHE 2680.0070
LEU 2690.0059
GLY 2700.0060
LEU 2710.0064
LYS 2720.0056
TRP 2730.0052
THR 2740.0062
ASN 2750.0070
LEU 2760.0088
THR 2770.0097
MET 2780.0106
LEU 2790.0104
ASP 2800.0115
LEU 2810.0114
SER 2820.0128
TYR 2830.0139
ASN 2840.0129
ASN 2850.0131
LEU 2860.0114
ASN 2870.0106
VAL 2880.0089
VAL 2890.0072
GLY 2900.0061
ASN 2910.0040
ASP 2920.0033
SER 2930.0053
PHE 2940.0059
ALA 2950.0044
TRP 2960.0053
LEU 2970.0066
PRO 2980.0066
GLN 2990.0080
LEU 3000.0086
GLU 3010.0105
TYR 3020.0115
PHE 3030.0101
PHE 3040.0113
LEU 3050.0105
GLU 3060.0120
TYR 3070.0131
ASN 3080.0121
ASN 3090.0116
ILE 3100.0095
GLN 3110.0086
HIS 3120.0064
LEU 3130.0044
PHE 3140.0033
SER 3150.0019
HIS 3160.0018
SER 3170.0036
LEU 3180.0042
HIS 3190.0031
GLY 3200.0045
LEU 3210.0060
PHE 3220.0073
ASN 3230.0094
VAL 3240.0094
ARG 3250.0112
TYR 3260.0114
LEU 3270.0094
ASN 3280.0104
LEU 3290.0089
LYS 3300.0108
ARG 3310.0113
SER 3320.0098
PHE 3330.0089
THR 3340.0107
LYS 3350.0119
GLN 3360.0112
SER 3370.0144
ILE 3380.0140
SER 3390.0170
LEU 3400.0165
ALA 3410.0129
SER 3420.0120
LEU 3430.0087
PRO 3440.0068
LYS 3450.0050
ILE 3460.0025
ASP 3470.0023
ASP 3480.0033
PHE 3490.0039
SER 3500.0021
PHE 3510.0042
GLN 3520.0054
TRP 3530.0055
LEU 3540.0072
LYS 3550.0092
CYS 3560.0111
LEU 3570.0101
GLU 3580.0120
HIS 3590.0115
LEU 3600.0091
ASN 3610.0093
MET 3620.0071
GLU 3630.0087
ASP 3640.0091
ASN 3650.0076
ASP 3660.0060
ILE 3670.0033
PRO 3680.0028
GLY 3690.0011
ILE 3700.0028
LYS 3710.0037
SER 3720.0062
ASN 3730.0059
MET 3740.0039
PHE 3750.0060
THR 3760.0072
GLY 3770.0086
LEU 3780.0092
ILE 3790.0117
ASN 3800.0127
LEU 3810.0113
LYS 3820.0126
TYR 3830.0115
LEU 3840.0091
SER 3850.0084
LEU 3860.0060
SER 3870.0068
ASN 3880.0060
SER 3890.0046
PHE 3900.0027
THR 3910.0032
SER 3920.0019
LEU 3930.0010
ARG 3940.0023
THR 3950.0043
LEU 3960.0048
THR 3970.0065
ASN 3980.0083
GLU 3990.0080
THR 4000.0063
PHE 4010.0074
VAL 4020.0090
SER 4030.0084
LEU 4040.0094
ALA 4050.0114
HIS 4060.0125
SER 4070.0119
PRO 4080.0136
LEU 4090.0118
HIS 4100.0126
ILE 4110.0107
LEU 4120.0086
ASN 4130.0075
LEU 4140.0054
THR 4150.0054
LYS 4160.0038
ASN 4170.0025
LYS 4180.0019
ILE 4190.0016
SER 4200.0028
LYS 4210.0041
ILE 4220.0050
GLU 4230.0067
SER 4240.0082
ASP 4250.0090
ALA 4260.0077
PHE 4270.0085
SER 4280.0105
TRP 4290.0109
LEU 4300.0107
GLY 4310.0125
HIS 4320.0131
LEU 4330.0112
GLU 4340.0111
VAL 4350.0097
LEU 4360.0078
ASP 4370.0067
LEU 4380.0048
GLY 4390.0045
LEU 4400.0045
ASN 4410.0029
GLU 4420.0024
ILE 4430.0024
GLY 4440.0033
GLN 4450.0043
GLU 4460.0045
LEU 4470.0046
THR 4480.0060
GLY 4490.0062
GLN 4500.0077
GLU 4510.0069
TRP 4520.0075
ARG 4530.0094
GLY 4540.0107
LEU 4550.0098
GLU 4560.0106
ASN 4570.0109
ILE 4580.0090
PHE 4590.0088
GLU 4600.0078
ILE 4610.0059
TYR 4620.0055
LEU 4630.0038
SER 4640.0047
TYR 4650.0050
ASN 4660.0036
LYS 4670.0037
TYR 4680.0037
LEU 4690.0032
GLN 4700.0040
LEU 4710.0037
THR 4720.0044
ARG 4730.0045
ASN 4740.0051
SER 4750.0045
PHE 4760.0047
ALA 4770.0057
LEU 4780.0069
VAL 4790.0066
PRO 4800.0064
SER 4810.0071
LEU 4820.0060
GLN 4830.0065
ARG 4840.0064
LEU 4850.0050
MET 4860.0050
LEU 4870.0043
ARG 4880.0059
ARG 4890.0061
VAL 4900.0046
ALA 4910.0052
LEU 4920.0047
LYS 4930.0048
ASN 4940.0049
VAL 4950.0046
ASP 4960.0052
SER 4970.0044
SER 4980.0048
PRO 4990.0040
SER 5000.0038
PRO 5010.0031
PHE 5020.0036
GLN 5030.0032
PRO 5040.0030
LEU 5050.0039
ARG 5060.0035
ASN 5070.0049
LEU 5080.0051
THR 5090.0068
ILE 5100.0069
LEU 5110.0057
ASP 5120.0063
LEU 5130.0062
SER 5140.0073
ASN 5150.0076
ASN 5160.0069
ASN 5170.0073
ILE 5180.0070
ALA 5190.0074
ASN 5200.0070
ILE 5210.0068
ASN 5220.0066
ASP 5230.0073
ASP 5240.0063
MET 5250.0060
LEU 5260.0066
GLU 5270.0064
GLY 5280.0060
LEU 5290.0065
GLU 5300.0074
LYS 5310.0075
LEU 5320.0078
GLU 5330.0092
ILE 5340.0092
LEU 5350.0086
ASP 5360.0083
LEU 5370.0082
GLN 5380.0085
HIS 5390.0083
ASN 5400.0080
ASN 5410.0078
LEU 5420.0080
ALA 5430.0079
ARG 5440.0079
LEU 5450.0082
TRP 5460.0083
LYS 5470.0080
HIS 5480.0083
ALA 5490.0079
ASN 5500.0081
PRO 5510.0080
GLY 5520.0087
GLY 5530.0084
PRO 5540.0083
ILE 5550.0089
TYR 5560.0092
PHE 5570.0091
LEU 5580.0095
LYS 5590.0100
GLY 5600.0105
LEU 5610.0104
SER 5620.0113
HIS 5630.0112
LEU 5640.0108
HIS 5650.0112
ILE 5660.0106
LEU 5670.0101
ASN 5680.0096
LEU 5690.0091
GLU 5700.0088
SER 5710.0080
ASN 5720.0083
GLY 5730.0076
PHE 5740.0078
ASP 5750.0073
GLU 5760.0079
ILE 5770.0086
PRO 5780.0093
VAL 5790.0098
GLU 5800.0104
VAL 5810.0103
PHE 5820.0109
LYS 5830.0115
ASP 5840.0120
LEU 5850.0117
PHE 5860.0128
GLU 5870.0129
LEU 5880.0121
LYS 5890.0119
ILE 5900.0111
ILE 5910.0106
ASP 5920.0099
LEU 5930.0089
GLY 5940.0082
LEU 5950.0074
ASN 5960.0069
ASN 5970.0056
LEU 5980.0059
ASN 5990.0047
THR 6000.0061
LEU 6010.0068
PRO 6020.0082
ALA 6030.0085
SER 6040.0096
VAL 6050.0099
PHE 6060.0104
ASN 6070.0113
ASN 6080.0124
GLN 6090.0120
VAL 6100.0129
SER 6110.0137
LEU 6120.0121
LYS 6130.0121
SER 6140.0110
LEU 6150.0094
ASN 6160.0093
LEU 6170.0071
GLN 6180.0067
LYS 6190.0051
ASN 6200.0042
LEU 6210.0028
ILE 6220.0028
THR 6230.0035
SER 6240.0041
VAL 6250.0028
GLU 6260.0037
LYS 6270.0048
LYS 6280.0072
VAL 6290.0073
PHE 6300.0066
GLY 6310.0073
PRO 6320.0099
ALA 6330.0095
PHE 6340.0086
ARG 6350.0103
ASN 6360.0116
LEU 6370.0110
THR 6380.0128
GLU 6390.0117
LEU 6400.0091
ASP 6410.0091
MET 6420.0062
ARG 6430.0071
PHE 6440.0060
ASN 6450.0035
PRO 6460.0047
PHE 6470.0054
ASP 6480.0078
CYS 6490.0100
THR 6500.0115
CYS 6510.0103
GLU 6520.0095
SER 6530.0069
ILE 6540.0053
ALA 6550.0064
TRP 6560.0029
PHE 6570.0038
VAL 6580.0065
ASN 6590.0059
TRP 6600.0061
ILE 6610.0084
ASN 6620.0085
GLU 6630.0080
THR 6640.0089
HIS 6650.0105
THR 6660.0110
ASN 6670.0131
ILE 6680.0115
PRO 6690.0138
GLU 6700.0140
LEU 6710.0126
SER 6720.0146
SER 6730.0147
HIS 6740.0113
TYR 6750.0091
LEU 6760.0105
CYS 6770.0103
ASN 6780.0103
THR 6790.0114
PRO 6800.0149
PRO 6810.0179
HIS 6820.0197
TYR 6830.0162
HIS 6840.0155
GLY 6850.0154
PHE 6860.0155
PRO 6870.0135
VAL 6880.0103
ARG 6890.0117
LEU 6900.0146
PHE 6910.0130
ASP 6920.0144
THR 6930.0116
SER 6940.0143
SER 6950.0160
CYS 6960.0128
GLU 10.0223
ALA 20.0246
ALA 30.0224
ALA 40.0185
LYS 50.0204
MET 60.0215
GLN 70.0186
ARG 80.0166
LEU 90.0199
VAL 100.0203
LEU 110.0165
LEU 120.0171
LEU 130.0198
ALA 140.0186
ILE 150.0171
SER 160.0188
LEU 170.0170
LEU 180.0178
LEU 190.0186
TYR 200.0171
GLN 210.0134
ASP 220.0180
LEU 230.0226
PRO 240.0222
VAL 250.0209
ARG 260.0329
SER 270.0345
GLU 280.0308
PHE 290.0323
GLU 300.0359
LEU 310.0326
ASP 320.0257
ARG 330.0219
ILE 340.0226
CYS 350.0204
GLY 360.0243
TYR 370.0309
GLY 380.0245
THR 390.0167
ALA 400.0116
ARG 410.0106
CYS 420.0112
ARG 430.0078
LYS 440.0076
LYS 450.0056
CYS 460.0057
ARG 470.0120
SER 480.0195
GLN 490.0171
GLU 500.0114
TYR 510.0137
ARG 520.0115
ILE 530.0165
GLY 540.0157
ARG 550.0139
CYS 560.0160
PRO 570.0207
ASN 580.0175
THR 590.0120
TYR 600.0085
ALA 610.0059
CYS 620.0103
CYS 630.0061
LEU 640.0107
ARG 650.0098
LYS 660.0223
TRP 670.0238
ASP 680.0192
GLU 690.0332
SER 700.0251
LEU 710.0154
LEU 720.0324
ASN 730.0329
ARG 740.0157
THR 750.0237
LYS 760.0320
PRO 770.0172
GLU 780.0203
ALA 790.0158
ALA 800.0107
ALA 810.0102
LYS 820.0090
LYS 830.0069
GLU 840.0039
MET 850.0024
ASN 860.0022
LEU 870.0040
SER 880.0068
VAL 890.0090
GLY 900.0115
LEU 910.0150
GLY 920.0187
GLY 930.0229
GLY 940.0211
SER 950.0185
ASN 960.0126
LEU 970.0109
SER 980.0073
VAL 990.0060
GLY 1000.0036
LEU 1010.0057
GLY 1020.0135
GLU 1030.0193
ILE 1040.0270
GLY 1050.0346
GLY 1060.0401
GLY 1070.0308
SER 1080.0216
LYS 1090.0128
LEU 1100.0067
LEU 1110.0032
ASP 1120.0061
ILE 1130.0074
ASN 1140.0107
LEU 1150.0124
GLY 1160.0151
ARG 1170.0157
GLY 1180.0160
GLY 1190.0155
GLY 1200.0149
SER 1210.0129
MET 1220.0113
VAL 1230.0101
ASP 1240.0090
LEU 1250.0074
THR 1260.0065
PHE 1270.0061
GLY 1280.0055
GLY 1290.0061
VAL 1300.0054
GLY 1310.0098
GLY 1320.0103
GLY 1330.0106
SER 1340.0092
THR 1350.0087
PHE 1360.0070
THR 1370.0062
PHE 1380.0055
PHE 1390.0050
PRO 1400.0044
LEU 1410.0043
VAL 1420.0047
ILE 1430.0057
GLY 1440.0064
GLY 1450.0074
GLY 1460.0087
SER 1470.0097
ASP 1480.0099
ALA 1490.0092
MET 1500.0075
TYR 1510.0062
LEU 1520.0062
GLY 1530.0062
PHE 1540.0063
ALA 1550.0063
ALA 1560.0087
GLY 1570.0093
GLY 1580.0111
GLY 1590.0113
SER 1600.0119
ALA 1610.0107
GLY 1620.0093
GLY 1630.0085
GLU 1640.0073
ASN 1650.0075
HIS 1660.0070
VAL 1670.0069
ALA 1680.0074
PHE 1690.0076
GLY 1700.0080
PRO 1710.0098
GLY 1720.0077
PRO 1730.0054
GLY 1740.0051
VAL 1750.0057
ASP 1760.0055
LEU 1770.0057
THR 1780.0062
PHE 1790.0064
GLY 1800.0068
GLY 1810.0068
VAL 1820.0049
GLN 1830.0048
PHE 1840.0040
ALA 1850.0044
MET 1860.0047
VAL 1870.0111
ASN 1880.0130
ASN 1890.0207
GLY 1900.0225
PRO 1910.0206
GLY 1920.0271
PRO 1930.0275
GLY 1940.0132
GLU 1950.0042
SER 1960.0305
PHE 1970.0267
THR 1980.0178
ALA 1990.0132
GLN 2000.0086
PRO 2010.0052
ALA 2020.0116
ASP 2030.0069
MET 2040.0101
GLN 2050.0124
ALA 2060.0084
GLY 2070.0081
ILE 2080.0069
LYS 2090.0079
GLY 2100.0063
PRO 2110.0048
GLY 2120.0048
PRO 2130.0055
GLY 2140.0058
GLY 2150.0056
SER 2160.0052
ILE 2170.0044
GLN 2180.0022
VAL 2190.0036
ILE 2200.0053
ASN 2210.0050
GLY 2220.0045
SER 2230.0114
THR 2240.0165
ILE 2250.0174
GLY 2260.0256
THR 2270.0275
GLY 2280.0217
SER 2290.0178
LYS 2300.0104
LYS 2310.0121
THR 2320.0071
ILE 2330.0071
LEU 2340.0082
ILE 2350.0130
TYR 2360.0167
SER 2370.0181
ILE 2380.0204
ILE 2390.0214
GLY 2400.0237
VAL 2410.0246
LYS 2420.0237
LYS 2430.0226
GLY 2440.0234
THR 2450.0248
LEU 2460.0263
ALA 2470.0243
TRP 2480.0203
ALA 2490.0194
ARG 2500.0157
THR 2510.0155
GLY 2520.0145
PHE 2530.0134
SER 2540.0132
PRO 2550.0104
ALA 2560.0119
LYS 2570.0156
LYS 2580.0152
LEU 2590.0076
ASN 2600.0098
ALA 2610.0272
GLY 2620.0207
VAL 2630.0172
VAL 2640.0161
ARG 2650.0095
VAL 2660.0092
PHE 2670.0101
PHE 2680.0122
LEU 2690.0130
ASN 2700.0138
GLN 2710.0147
LYS 2720.0139
LYS 2730.0149
ALA 2740.0159
LYS 2750.0155
ASP 2760.0174
VAL 2770.0160
LEU 2780.0158
ARG 2790.0150
LYS 2800.0140
THR 2810.0091
SER 2820.0118
ARG 2830.0199
PRO 2840.0312
MET 2850.0445
VAL 2860.0443
ASP 2870.0345
LEU 2880.0236
THR 2890.0186
PHE 2900.0084
GLY 2910.0210
GLY 2920.0288

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elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.