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***  TLR_3_simulation  ***

<R2> analysis for 2608260340483950756

---  normal mode 40  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.1198
THR 260.0025
LYS 270.0027
CYS 280.0028
THR 290.0029
VAL 300.0031
SER 310.0031
HIS 320.0033
GLU 330.0034
VAL 340.0032
ALA 350.0031
ASP 360.0031
CYS 370.0029
SER 380.0028
HIS 390.0027
LEU 400.0027
LYS 410.0023
LEU 420.0022
THR 430.0018
GLN 440.0021
VAL 450.0022
PRO 460.0027
ASP 470.0029
ASP 480.0034
LEU 490.0033
PRO 500.0035
THR 510.0032
ASN 520.0034
ILE 530.0031
THR 540.0028
VAL 550.0027
LEU 560.0026
ASN 570.0026
LEU 580.0023
THR 590.0023
HIS 600.0023
ASN 610.0019
GLN 620.0014
LEU 630.0012
ARG 640.0010
ARG 650.0011
LEU 660.0011
PRO 670.0015
ALA 680.0014
ALA 690.0021
ASN 700.0021
PHE 710.0018
THR 720.0021
ARG 730.0025
TYR 740.0022
SER 750.0019
GLN 760.0021
LEU 770.0019
THR 780.0019
SER 790.0020
LEU 800.0015
ASP 810.0017
VAL 820.0013
GLY 830.0014
PHE 840.0013
ASN 850.0010
THR 860.0006
ILE 870.0006
SER 880.0009
LYS 890.0010
LEU 900.0008
GLU 910.0010
PRO 920.0011
GLU 930.0010
LEU 940.0007
CYS 950.0007
GLN 960.0008
LYS 970.0009
LEU 980.0009
PRO 990.0008
MET 1000.0013
LEU 1010.0012
LYS 1020.0017
VAL 1030.0018
LEU 1040.0014
ASN 1050.0014
LEU 1060.0011
GLN 1070.0013
HIS 1080.0012
ASN 1090.0009
GLU 1100.0009
LEU 1110.0012
SER 1120.0014
GLN 1130.0015
LEU 1140.0016
SER 1150.0017
ASP 1160.0019
LYS 1170.0017
THR 1180.0014
PHE 1190.0016
ALA 1200.0017
PHE 1210.0014
CYS 1220.0015
THR 1230.0018
ASN 1240.0019
LEU 1250.0019
THR 1260.0022
GLU 1270.0021
LEU 1280.0019
HIS 1290.0018
LEU 1300.0016
MET 1310.0016
SER 1320.0015
ASN 1330.0014
SER 1340.0014
ILE 1350.0016
GLN 1360.0015
LYS 1370.0017
ILE 1380.0018
LYS 1390.0020
ASN 1400.0021
ASN 1410.0022
PRO 1420.0020
PHE 1430.0021
VAL 1440.0023
LYS 1450.0023
GLN 1460.0023
LYS 1470.0026
ASN 1480.0026
LEU 1490.0024
ILE 1500.0025
THR 1510.0024
LEU 1520.0022
ASP 1530.0021
LEU 1540.0019
SER 1550.0018
HIS 1560.0016
ASN 1570.0015
GLY 1580.0015
LEU 1590.0016
SER 1600.0016
SER 1610.0016
THR 1620.0017
LYS 1630.0019
LEU 1640.0020
GLY 1650.0022
THR 1660.0023
GLN 1670.0025
VAL 1680.0025
GLN 1690.0025
LEU 1700.0025
GLU 1710.0027
ASN 1720.0028
LEU 1730.0025
GLN 1740.0025
GLU 1750.0023
LEU 1760.0021
LEU 1770.0019
LEU 1780.0017
SER 1790.0016
ASN 1800.0015
ASN 1810.0015
LYS 1820.0012
ILE 1830.0012
GLN 1840.0009
ALA 1850.0009
LEU 1860.0011
LYS 1870.0011
SER 1880.0013
GLU 1890.0015
GLU 1900.0016
LEU 1910.0017
ASP 1920.0019
ILE 1930.0021
PHE 1940.0021
ALA 1950.0021
ASN 1960.0024
SER 1970.0023
SER 1980.0023
LEU 1990.0021
LYS 2000.0023
LYS 2010.0019
LEU 2020.0016
GLU 2030.0017
LEU 2040.0013
SER 2050.0015
SER 2060.0016
ASN 2070.0013
GLN 2080.0011
ILE 2090.0009
LYS 2100.0008
GLU 2110.0008
PHE 2120.0008
SER 2130.0006
PRO 2140.0006
GLY 2150.0008
CYS 2160.0009
PHE 2170.0012
HIS 2180.0011
ALA 2190.0014
ILE 2200.0017
GLY 2210.0016
ARG 2220.0016
LEU 2230.0015
PHE 2240.0018
GLY 2250.0018
LEU 2260.0014
PHE 2270.0016
LEU 2280.0014
ASN 2290.0018
ASN 2300.0018
VAL 2310.0017
GLN 2320.0017
LEU 2330.0017
GLY 2340.0018
PRO 2350.0018
SER 2360.0016
LEU 2370.0015
THR 2380.0016
GLU 2390.0016
LYS 2400.0014
LEU 2410.0014
CYS 2420.0015
LEU 2430.0013
GLU 2440.0011
LEU 2450.0014
ALA 2460.0012
ASN 2470.0012
THR 2480.0013
SER 2490.0015
ILE 2500.0015
ARG 2510.0018
ASN 2520.0019
LEU 2530.0018
SER 2540.0019
LEU 2550.0019
SER 2560.0021
ASN 2570.0021
SER 2580.0021
GLN 2590.0021
LEU 2600.0021
SER 2610.0020
THR 2620.0020
THR 2630.0019
SER 2640.0020
ASN 2650.0020
THR 2660.0019
THR 2670.0019
PHE 2680.0019
LEU 2690.0019
GLY 2700.0019
LEU 2710.0018
LYS 2720.0019
TRP 2730.0018
THR 2740.0018
ASN 2750.0019
LEU 2760.0020
THR 2770.0020
MET 2780.0020
LEU 2790.0020
ASP 2800.0020
LEU 2810.0021
SER 2820.0020
TYR 2830.0020
ASN 2840.0021
ASN 2850.0018
LEU 2860.0018
ASN 2870.0016
VAL 2880.0018
VAL 2890.0017
GLY 2900.0019
ASN 2910.0018
ASP 2920.0019
SER 2930.0019
PHE 2940.0018
ALA 2950.0019
TRP 2960.0020
LEU 2970.0020
PRO 2980.0019
GLN 2990.0020
LEU 3000.0019
GLU 3010.0016
TYR 3020.0017
PHE 3030.0016
PHE 3040.0016
LEU 3050.0015
GLU 3060.0015
TYR 3070.0015
ASN 3080.0014
ASN 3090.0011
ILE 3100.0011
GLN 3110.0010
HIS 3120.0011
LEU 3130.0009
PHE 3140.0013
SER 3150.0011
HIS 3160.0015
SER 3170.0014
LEU 3180.0012
HIS 3190.0015
GLY 3200.0016
LEU 3210.0014
PHE 3220.0013
ASN 3230.0014
VAL 3240.0013
ARG 3250.0013
TYR 3260.0012
LEU 3270.0010
ASN 3280.0011
LEU 3290.0008
LYS 3300.0011
ARG 3310.0011
SER 3320.0008
PHE 3330.0004
THR 3340.0004
LYS 3350.0004
GLN 3360.0009
SER 3370.0011
ILE 3380.0019
SER 3390.0023
LEU 3400.0025
ALA 3410.0021
SER 3420.0016
LEU 3430.0013
PRO 3440.0008
LYS 3450.0011
ILE 3460.0007
ASP 3470.0011
ASP 3480.0012
PHE 3490.0008
SER 3500.0006
PHE 3510.0003
GLN 3520.0005
TRP 3530.0008
LEU 3540.0007
LYS 3550.0006
CYS 3560.0008
LEU 3570.0007
GLU 3580.0011
HIS 3590.0012
LEU 3600.0009
ASN 3610.0012
MET 3620.0010
GLU 3630.0014
ASP 3640.0015
ASN 3650.0010
ASP 3660.0012
ILE 3670.0012
PRO 3680.0016
GLY 3690.0018
ILE 3700.0016
LYS 3710.0015
SER 3720.0016
ASN 3730.0012
MET 3740.0009
PHE 3750.0008
THR 3760.0007
GLY 3770.0004
LEU 3780.0005
ILE 3790.0006
ASN 3800.0009
LEU 3810.0011
LYS 3820.0016
TYR 3830.0017
LEU 3840.0015
SER 3850.0017
LEU 3860.0017
SER 3870.0020
ASN 3880.0019
SER 3890.0016
PHE 3900.0018
THR 3910.0020
SER 3920.0022
LEU 3930.0022
ARG 3940.0023
THR 3950.0023
LEU 3960.0022
THR 3970.0022
ASN 3980.0021
GLU 3990.0020
THR 4000.0020
PHE 4010.0019
VAL 4020.0018
SER 4030.0015
LEU 4040.0016
ALA 4050.0018
HIS 4060.0015
SER 4070.0015
PRO 4080.0018
LEU 4090.0019
HIS 4100.0022
ILE 4110.0022
LEU 4120.0022
ASN 4130.0022
LEU 4140.0023
THR 4150.0024
LYS 4160.0024
ASN 4170.0023
LYS 4180.0024
ILE 4190.0024
SER 4200.0025
LYS 4210.0024
ILE 4220.0023
GLU 4230.0023
SER 4240.0023
ASP 4250.0022
ALA 4260.0023
PHE 4270.0023
SER 4280.0023
TRP 4290.0021
LEU 4300.0022
GLY 4310.0024
HIS 4320.0024
LEU 4330.0024
GLU 4340.0025
VAL 4350.0024
LEU 4360.0024
ASP 4370.0025
LEU 4380.0025
GLY 4390.0025
LEU 4400.0026
ASN 4410.0026
GLU 4420.0026
ILE 4430.0024
GLY 4440.0023
GLN 4450.0022
GLU 4460.0018
LEU 4470.0019
THR 4480.0019
GLY 4490.0019
GLN 4500.0021
GLU 4510.0023
TRP 4520.0023
ARG 4530.0024
GLY 4540.0024
LEU 4550.0024
GLU 4560.0026
ASN 4570.0026
ILE 4580.0024
PHE 4590.0023
GLU 4600.0022
ILE 4610.0023
TYR 4620.0024
LEU 4630.0023
SER 4640.0023
TYR 4650.0024
ASN 4660.0024
LYS 4670.0023
TYR 4680.0020
LEU 4690.0019
GLN 4700.0016
LEU 4710.0014
THR 4720.0014
ARG 4730.0012
ASN 4740.0015
SER 4750.0017
PHE 4760.0017
ALA 4770.0018
LEU 4780.0019
VAL 4790.0019
PRO 4800.0018
SER 4810.0018
LEU 4820.0018
GLN 4830.0019
ARG 4840.0020
LEU 4850.0019
MET 4860.0021
LEU 4870.0019
ARG 4880.0021
ARG 4890.0021
VAL 4900.0020
ALA 4910.0018
LEU 4920.0015
LYS 4930.0013
ASN 4940.0011
VAL 4950.0011
ASP 4960.0009
SER 4970.0010
SER 4980.0011
PRO 4990.0010
SER 5000.0009
PRO 5010.0010
PHE 5020.0011
GLN 5030.0010
PRO 5040.0011
LEU 5050.0011
ARG 5060.0009
ASN 5070.0009
LEU 5080.0013
THR 5090.0017
ILE 5100.0022
LEU 5110.0019
ASP 5120.0020
LEU 5130.0016
SER 5140.0018
ASN 5150.0017
ASN 5160.0015
ASN 5170.0011
ILE 5180.0009
ALA 5190.0008
ASN 5200.0008
ILE 5210.0010
ASN 5220.0011
ASP 5230.0014
ASP 5240.0011
MET 5250.0010
LEU 5260.0014
GLU 5270.0014
GLY 5280.0013
LEU 5290.0013
GLU 5300.0016
LYS 5310.0015
LEU 5320.0018
GLU 5330.0026
ILE 5340.0028
LEU 5350.0024
ASP 5360.0022
LEU 5370.0018
GLN 5380.0019
HIS 5390.0016
ASN 5400.0012
ASN 5410.0009
LEU 5420.0010
ALA 5430.0011
ARG 5440.0011
LEU 5450.0012
TRP 5460.0016
LYS 5470.0017
HIS 5480.0023
ALA 5490.0022
ASN 5500.0019
PRO 5510.0021
GLY 5520.0022
GLY 5530.0022
PRO 5540.0019
ILE 5550.0017
TYR 5560.0020
PHE 5570.0017
LEU 5580.0022
LYS 5590.0025
GLY 5600.0027
LEU 5610.0027
SER 5620.0032
HIS 5630.0033
LEU 5640.0032
HIS 5650.0037
ILE 5660.0037
LEU 5670.0030
ASN 5680.0027
LEU 5690.0021
GLU 5700.0020
SER 5710.0015
ASN 5720.0012
GLY 5730.0009
PHE 5740.0011
ASP 5750.0012
GLU 5760.0018
ILE 5770.0021
PRO 5780.0026
VAL 5790.0032
GLU 5800.0032
VAL 5810.0028
PHE 5820.0033
LYS 5830.0038
ASP 5840.0038
LEU 5850.0038
PHE 5860.0045
GLU 5870.0045
LEU 5880.0042
LYS 5890.0046
ILE 5900.0042
ILE 5910.0037
ASP 5920.0032
LEU 5930.0024
GLY 5940.0023
LEU 5950.0019
ASN 5960.0013
ASN 5970.0007
LEU 5980.0008
ASN 5990.0011
THR 6000.0020
LEU 6010.0026
PRO 6020.0034
ALA 6030.0042
SER 6040.0045
VAL 6050.0038
PHE 6060.0043
ASN 6070.0052
ASN 6080.0053
GLN 6090.0051
VAL 6100.0060
SER 6110.0063
LEU 6120.0055
LYS 6130.0058
SER 6140.0050
LEU 6150.0041
ASN 6160.0037
LEU 6170.0024
GLN 6180.0027
LYS 6190.0025
ASN 6200.0013
LEU 6210.0016
ILE 6220.0010
THR 6230.0019
SER 6240.0022
VAL 6250.0021
GLU 6260.0035
LYS 6270.0046
LYS 6280.0052
VAL 6290.0042
PHE 6300.0040
GLY 6310.0053
PRO 6320.0060
ALA 6330.0051
PHE 6340.0052
ARG 6350.0066
ASN 6360.0072
LEU 6370.0063
THR 6380.0069
GLU 6390.0059
LEU 6400.0045
ASP 6410.0042
MET 6420.0026
ARG 6430.0035
PHE 6440.0036
ASN 6450.0023
PRO 6460.0034
PHE 6470.0025
ASP 6480.0035
CYS 6490.0036
THR 6500.0046
CYS 6510.0046
GLU 6520.0053
SER 6530.0037
ILE 6540.0021
ALA 6550.0028
TRP 6560.0033
PHE 6570.0022
VAL 6580.0016
ASN 6590.0031
TRP 6600.0039
ILE 6610.0035
ASN 6620.0037
GLU 6630.0047
THR 6640.0052
HIS 6650.0062
THR 6660.0063
ASN 6670.0066
ILE 6680.0053
PRO 6690.0063
GLU 6700.0060
LEU 6710.0050
SER 6720.0053
SER 6730.0063
HIS 6740.0053
TYR 6750.0036
LEU 6760.0045
CYS 6770.0043
ASN 6780.0056
THR 6790.0060
PRO 6800.0070
PRO 6810.0089
HIS 6820.0084
TYR 6830.0065
HIS 6840.0074
GLY 6850.0073
PHE 6860.0057
PRO 6870.0044
VAL 6880.0024
ARG 6890.0024
LEU 6900.0027
PHE 6910.0022
ASP 6920.0024
THR 6930.0029
SER 6940.0041
SER 6950.0056
CYS 6960.0061
GLU 10.0046
ALA 20.0041
ALA 30.0031
ALA 40.0027
LYS 50.0029
MET 60.0022
GLN 70.0013
ARG 80.0014
LEU 90.0020
VAL 100.0014
LEU 110.0009
LEU 120.0017
LEU 130.0022
ALA 140.0018
ILE 150.0019
SER 160.0032
LEU 170.0038
LEU 180.0037
LEU 190.0040
TYR 200.0055
GLN 210.0063
ASP 220.0062
LEU 230.0073
PRO 240.0091
VAL 250.0095
ARG 260.0084
SER 270.0070
GLU 280.0059
PHE 290.0048
GLU 300.0047
LEU 310.0038
ASP 320.0033
ARG 330.0023
ILE 340.0023
CYS 350.0025
GLY 360.0026
TYR 370.0031
GLY 380.0025
THR 390.0018
ALA 400.0015
ARG 410.0016
CYS 420.0021
ARG 430.0020
LYS 440.0024
LYS 450.0023
CYS 460.0023
ARG 470.0020
SER 480.0023
GLN 490.0016
GLU 500.0012
TYR 510.0018
ARG 520.0022
ILE 530.0025
GLY 540.0029
ARG 550.0029
CYS 560.0030
PRO 570.0035
ASN 580.0030
THR 590.0033
TYR 600.0027
ALA 610.0028
CYS 620.0024
CYS 630.0017
LEU 640.0012
ARG 650.0008
LYS 660.0015
TRP 670.0019
ASP 680.0028
GLU 690.0038
SER 700.0044
LEU 710.0044
LEU 720.0046
ASN 730.0050
ARG 740.0050
THR 750.0050
LYS 760.0052
PRO 770.0041
GLU 780.0041
ALA 790.0041
ALA 800.0038
ALA 810.0052
LYS 820.0067
LYS 830.0039
GLU 840.0062
MET 850.0040
ASN 860.0062
LEU 870.0051
SER 880.0065
VAL 890.0062
GLY 900.0077
LEU 910.0089
GLY 920.0110
GLY 930.0153
GLY 940.0159
SER 950.0142
ASN 960.0114
LEU 970.0103
SER 980.0096
VAL 990.0087
GLY 1000.0089
LEU 1010.0092
GLY 1020.0169
GLU 1030.0206
ILE 1040.0296
GLY 1050.0367
GLY 1060.0419
GLY 1070.0322
SER 1080.0238
LYS 1090.0134
LEU 1100.0051
LEU 1110.0047
ASP 1120.0051
ILE 1130.0043
ASN 1140.0052
LEU 1150.0045
GLY 1160.0053
ARG 1170.0040
GLY 1180.0038
GLY 1190.0027
GLY 1200.0032
SER 1210.0039
MET 1220.0037
VAL 1230.0030
ASP 1240.0038
LEU 1250.0025
THR 1260.0039
PHE 1270.0033
GLY 1280.0054
GLY 1290.0046
VAL 1300.0054
GLY 1310.0089
GLY 1320.0075
GLY 1330.0047
SER 1340.0043
THR 1350.0026
PHE 1360.0043
THR 1370.0081
PHE 1380.0077
PHE 1390.0118
PRO 1400.0120
LEU 1410.0134
VAL 1420.0179
ILE 1430.0130
GLY 1440.0172
GLY 1450.0130
GLY 1460.0089
SER 1470.0071
ASP 1480.0039
ALA 1490.0055
MET 1500.0042
TYR 1510.0061
LEU 1520.0058
GLY 1530.0085
PHE 1540.0084
ALA 1550.0109
ALA 1560.0082
GLY 1570.0064
GLY 1580.0047
GLY 1590.0024
SER 1600.0027
ALA 1610.0029
GLY 1620.0051
GLY 1630.0063
GLU 1640.0059
ASN 1650.0052
HIS 1660.0058
VAL 1670.0047
ALA 1680.0051
PHE 1690.0040
GLY 1700.0053
PRO 1710.0053
GLY 1720.0023
PRO 1730.0051
GLY 1740.0068
VAL 1750.0089
ASP 1760.0114
LEU 1770.0109
THR 1780.0118
PHE 1790.0116
GLY 1800.0136
GLY 1810.0190
VAL 1820.0203
GLN 1830.0191
PHE 1840.0192
ALA 1850.0204
MET 1860.0198
VAL 1870.0138
ASN 1880.0195
ASN 1890.0326
GLY 1900.0432
PRO 1910.0406
GLY 1920.0695
PRO 1930.1198
GLY 1940.0971
GLU 1950.0195
SER 1960.0976
PHE 1970.0918
THR 1980.0510
ALA 1990.0455
GLN 2000.0229
PRO 2010.0273
ALA 2020.0422
ASP 2030.0270
MET 2040.0294
GLN 2050.0326
ALA 2060.0065
GLY 2070.0099
ILE 2080.0077
LYS 2090.0063
GLY 2100.0117
PRO 2110.0104
GLY 2120.0044
PRO 2130.0046
GLY 2140.0100
GLY 2150.0157
SER 2160.0257
ILE 2170.0320
GLN 2180.0479
VAL 2190.0505
ILE 2200.0684
ASN 2210.0560
GLY 2220.0451
SER 2230.0385
THR 2240.0302
ILE 2250.0198
GLY 2260.0062
THR 2270.0114
GLY 2280.0155
SER 2290.0227
LYS 2300.0164
LYS 2310.0130
THR 2320.0114
ILE 2330.0112
LEU 2340.0100
ILE 2350.0095
TYR 2360.0105
SER 2370.0076
ILE 2380.0084
ILE 2390.0063
GLY 2400.0075
VAL 2410.0110
LYS 2420.0085
LYS 2430.0115
GLY 2440.0138
THR 2450.0122
LEU 2460.0122
ALA 2470.0113
TRP 2480.0122
ALA 2490.0114
ARG 2500.0124
THR 2510.0105
GLY 2520.0108
PHE 2530.0112
SER 2540.0119
PRO 2550.0132
ALA 2560.0166
LYS 2570.0190
LYS 2580.0193
LEU 2590.0137
ASN 2600.0205
ALA 2610.0247
GLY 2620.0175
VAL 2630.0160
VAL 2640.0137
ARG 2650.0095
VAL 2660.0104
PHE 2670.0073
PHE 2680.0107
LEU 2690.0117
ASN 2700.0138
GLN 2710.0187
LYS 2720.0284
LYS 2730.0261
ALA 2740.0191
LYS 2750.0280
ASP 2760.0306
VAL 2770.0185
LEU 2780.0144
ARG 2790.0183
LYS 2800.0125
THR 2810.0105
SER 2820.0162
ARG 2830.0181
PRO 2840.0247
MET 2850.0195
VAL 2860.0448
ASP 2870.0337
LEU 2880.0180
THR 2890.0123
PHE 2900.0175
GLY 2910.0134
GLY 2920.0365

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.