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***  TLR_3_simulation  ***

<R2> analysis for 2608260340483950756

---  normal mode 41  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0733
THR 260.0110
LYS 270.0097
CYS 280.0081
THR 290.0066
VAL 300.0053
SER 310.0035
HIS 320.0024
GLU 330.0033
VAL 340.0040
ALA 350.0054
ASP 360.0066
CYS 370.0081
SER 380.0088
HIS 390.0102
LEU 400.0107
LYS 410.0105
LEU 420.0091
THR 430.0083
GLN 440.0072
VAL 450.0066
PRO 460.0071
ASP 470.0067
ASP 480.0072
LEU 490.0061
PRO 500.0052
THR 510.0043
ASN 520.0035
ILE 530.0035
THR 540.0026
VAL 550.0036
LEU 560.0049
ASN 570.0061
LEU 580.0072
THR 590.0081
HIS 600.0095
ASN 610.0091
GLN 620.0086
LEU 630.0067
ARG 640.0059
ARG 650.0041
LEU 660.0046
PRO 670.0036
ALA 680.0023
ALA 690.0028
ASN 700.0038
PHE 710.0032
THR 720.0028
ARG 730.0037
TYR 740.0030
SER 750.0017
GLN 760.0016
LEU 770.0020
THR 780.0021
SER 790.0033
LEU 800.0038
ASP 810.0050
VAL 820.0053
GLY 830.0065
PHE 840.0075
ASN 850.0069
THR 860.0071
ILE 870.0060
SER 880.0059
LYS 890.0048
LEU 900.0044
GLU 910.0039
PRO 920.0037
GLU 930.0022
LEU 940.0024
CYS 950.0027
GLN 960.0017
LYS 970.0007
LEU 980.0012
PRO 990.0013
MET 1000.0013
LEU 1010.0023
LYS 1020.0030
VAL 1030.0038
LEU 1040.0042
ASN 1050.0051
LEU 1060.0054
GLN 1070.0065
HIS 1080.0074
ASN 1090.0069
GLU 1100.0073
LEU 1110.0077
SER 1120.0086
GLN 1130.0085
LEU 1140.0078
SER 1150.0077
ASP 1160.0073
LYS 1170.0066
THR 1180.0061
PHE 1190.0056
ALA 1200.0056
PHE 1210.0042
CYS 1220.0039
THR 1230.0040
ASN 1240.0033
LEU 1250.0039
THR 1260.0037
GLU 1270.0043
LEU 1280.0051
HIS 1290.0058
LEU 1300.0066
MET 1310.0073
SER 1320.0081
ASN 1330.0081
SER 1340.0090
ILE 1350.0087
GLN 1360.0099
LYS 1370.0096
ILE 1380.0088
LYS 1390.0094
ASN 1400.0091
ASN 1410.0080
PRO 1420.0074
PHE 1430.0065
VAL 1440.0065
LYS 1450.0058
GLN 1460.0053
LYS 1470.0048
ASN 1480.0040
LEU 1490.0043
ILE 1500.0037
THR 1510.0045
LEU 1520.0055
ASP 1530.0061
LEU 1540.0070
SER 1550.0073
HIS 1560.0078
ASN 1570.0083
GLY 1580.0089
LEU 1590.0082
SER 1600.0083
SER 1610.0073
THR 1620.0062
LYS 1630.0068
LEU 1640.0069
GLY 1650.0074
THR 1660.0077
GLN 1670.0071
VAL 1680.0061
GLN 1690.0058
LEU 1700.0049
GLU 1710.0043
ASN 1720.0035
LEU 1730.0037
GLN 1740.0029
GLU 1750.0036
LEU 1760.0044
LEU 1770.0052
LEU 1780.0057
SER 1790.0060
ASN 1800.0070
ASN 1810.0073
LYS 1820.0072
ILE 1830.0060
GLN 1840.0054
ALA 1850.0045
LEU 1860.0038
LYS 1870.0042
SER 1880.0043
GLU 1890.0059
GLU 1900.0056
LEU 1910.0046
ASP 1920.0051
ILE 1930.0055
PHE 1940.0042
ALA 1950.0042
ASN 1960.0040
SER 1970.0030
SER 1980.0017
LEU 1990.0020
LYS 2000.0022
LYS 2010.0028
LEU 2020.0026
GLU 2030.0038
LEU 2040.0035
SER 2050.0045
SER 2060.0057
ASN 2070.0048
GLN 2080.0043
ILE 2090.0028
LYS 2100.0021
GLU 2110.0018
PHE 2120.0012
SER 2130.0021
PRO 2140.0027
GLY 2150.0027
CYS 2160.0019
PHE 2170.0013
HIS 2180.0021
ALA 2190.0029
ILE 2200.0023
GLY 2210.0022
ARG 2220.0013
LEU 2230.0014
PHE 2240.0026
GLY 2250.0035
LEU 2260.0031
PHE 2270.0041
LEU 2280.0040
ASN 2290.0054
ASN 2300.0057
VAL 2310.0051
GLN 2320.0053
LEU 2330.0050
GLY 2340.0059
PRO 2350.0062
SER 2360.0055
LEU 2370.0045
THR 2380.0053
GLU 2390.0055
LYS 2400.0041
LEU 2410.0037
CYS 2420.0046
LEU 2430.0041
GLU 2440.0028
LEU 2450.0035
ALA 2460.0038
ASN 2470.0038
THR 2480.0033
SER 2490.0035
ILE 2500.0039
ARG 2510.0057
ASN 2520.0059
LEU 2530.0059
SER 2540.0063
LEU 2550.0064
SER 2560.0074
ASN 2570.0074
SER 2580.0070
GLN 2590.0074
LEU 2600.0076
SER 2610.0077
THR 2620.0077
THR 2630.0075
SER 2640.0075
ASN 2650.0073
THR 2660.0069
THR 2670.0067
PHE 2680.0066
LEU 2690.0065
GLY 2700.0057
LEU 2710.0057
LYS 2720.0063
TRP 2730.0056
THR 2740.0055
ASN 2750.0061
LEU 2760.0072
THR 2770.0075
MET 2780.0076
LEU 2790.0075
ASP 2800.0076
LEU 2810.0087
SER 2820.0084
TYR 2830.0085
ASN 2840.0086
ASN 2850.0079
LEU 2860.0074
ASN 2870.0069
VAL 2880.0069
VAL 2890.0071
GLY 2900.0072
ASN 2910.0065
ASP 2920.0070
SER 2930.0073
PHE 2940.0075
ALA 2950.0076
TRP 2960.0072
LEU 2970.0074
PRO 2980.0078
GLN 2990.0079
LEU 3000.0078
GLU 3010.0083
TYR 3020.0081
PHE 3030.0077
PHE 3040.0076
LEU 3050.0072
GLU 3060.0072
TYR 3070.0076
ASN 3080.0073
ASN 3090.0063
ILE 3100.0055
GLN 3110.0042
HIS 3120.0038
LEU 3130.0043
PHE 3140.0046
SER 3150.0048
HIS 3160.0059
SER 3170.0060
LEU 3180.0062
HIS 3190.0067
GLY 3200.0074
LEU 3210.0074
PHE 3220.0077
ASN 3230.0081
VAL 3240.0075
ARG 3250.0074
TYR 3260.0070
LEU 3270.0062
ASN 3280.0062
LEU 3290.0052
LYS 3300.0057
ARG 3310.0061
SER 3320.0054
PHE 3330.0040
THR 3340.0045
LYS 3350.0056
GLN 3360.0056
SER 3370.0058
ILE 3380.0064
SER 3390.0055
LEU 3400.0033
ALA 3410.0032
SER 3420.0025
LEU 3430.0025
PRO 3440.0023
LYS 3450.0013
ILE 3460.0023
ASP 3470.0030
ASP 3480.0037
PHE 3490.0044
SER 3500.0043
PHE 3510.0045
GLN 3520.0054
TRP 3530.0063
LEU 3540.0061
LYS 3550.0066
CYS 3560.0073
LEU 3570.0061
GLU 3580.0059
HIS 3590.0054
LEU 3600.0043
ASN 3610.0043
MET 3620.0032
GLU 3630.0047
ASP 3640.0058
ASN 3650.0045
ASP 3660.0046
ILE 3670.0034
PRO 3680.0045
GLY 3690.0045
ILE 3700.0037
LYS 3710.0041
SER 3720.0050
ASN 3730.0047
MET 3740.0032
PHE 3750.0031
THR 3760.0047
GLY 3770.0057
LEU 3780.0050
ILE 3790.0060
ASN 3800.0059
LEU 3810.0045
LYS 3820.0043
TYR 3830.0037
LEU 3840.0024
SER 3850.0030
LEU 3860.0030
SER 3870.0049
ASN 3880.0058
SER 3890.0042
PHE 3900.0050
THR 3910.0070
SER 3920.0081
LEU 3930.0071
ARG 3940.0090
THR 3950.0088
LEU 3960.0069
THR 3970.0079
ASN 3980.0078
GLU 3990.0075
THR 4000.0060
PHE 4010.0043
VAL 4020.0057
SER 4030.0048
LEU 4040.0037
ALA 4050.0052
HIS 4060.0058
SER 4070.0045
PRO 4080.0046
LEU 4090.0029
HIS 4100.0028
ILE 4110.0023
LEU 4120.0015
ASN 4130.0032
LEU 4140.0042
THR 4150.0060
LYS 4160.0077
ASN 4170.0070
LYS 4180.0089
ILE 4190.0079
SER 4200.0094
LYS 4210.0087
ILE 4220.0071
GLU 4230.0079
SER 4240.0076
ASP 4250.0065
ALA 4260.0059
PHE 4270.0041
SER 4280.0053
TRP 4290.0051
LEU 4300.0034
GLY 4310.0041
HIS 4320.0036
LEU 4330.0017
GLU 4340.0019
VAL 4350.0019
LEU 4360.0022
ASP 4370.0039
LEU 4380.0049
GLY 4390.0063
LEU 4400.0080
ASN 4410.0083
GLU 4420.0094
ILE 4430.0082
GLY 4440.0092
GLN 4450.0083
GLU 4460.0071
LEU 4470.0055
THR 4480.0058
GLY 4490.0044
GLN 4500.0053
GLU 4510.0052
TRP 4520.0035
ARG 4530.0046
GLY 4540.0045
LEU 4550.0026
GLU 4560.0039
ASN 4570.0033
ILE 4580.0017
PHE 4590.0026
GLU 4600.0025
ILE 4610.0026
TYR 4620.0042
LEU 4630.0048
SER 4640.0062
TYR 4650.0078
ASN 4660.0078
LYS 4670.0089
TYR 4680.0080
LEU 4690.0063
GLN 4700.0059
LEU 4710.0042
THR 4720.0037
ARG 4730.0025
ASN 4740.0029
SER 4750.0030
PHE 4760.0020
ALA 4770.0022
LEU 4780.0025
VAL 4790.0014
PRO 4800.0018
SER 4810.0026
LEU 4820.0022
GLN 4830.0034
ARG 4840.0037
LEU 4850.0033
MET 4860.0046
LEU 4870.0047
ARG 4880.0062
ARG 4890.0071
VAL 4900.0062
ALA 4910.0070
LEU 4920.0054
LYS 4930.0051
ASN 4940.0040
VAL 4950.0032
ASP 4960.0030
SER 4970.0021
SER 4980.0011
PRO 4990.0009
SER 5000.0017
PRO 5010.0020
PHE 5020.0023
GLN 5030.0019
PRO 5040.0017
LEU 5050.0023
ARG 5060.0037
ASN 5070.0043
LEU 5080.0040
THR 5090.0045
ILE 5100.0044
LEU 5110.0041
ASP 5120.0047
LEU 5130.0045
SER 5140.0055
ASN 5150.0060
ASN 5160.0057
ASN 5170.0055
ILE 5180.0050
ALA 5190.0047
ASN 5200.0044
ILE 5210.0044
ASN 5220.0038
ASP 5230.0041
ASP 5240.0034
MET 5250.0034
LEU 5260.0035
GLU 5270.0034
GLY 5280.0036
LEU 5290.0038
GLU 5300.0041
LYS 5310.0044
LEU 5320.0043
GLU 5330.0044
ILE 5340.0044
LEU 5350.0043
ASP 5360.0050
LEU 5370.0052
GLN 5380.0057
HIS 5390.0059
ASN 5400.0057
ASN 5410.0066
LEU 5420.0065
ALA 5430.0070
ARG 5440.0071
LEU 5450.0067
TRP 5460.0070
LYS 5470.0077
HIS 5480.0080
ALA 5490.0086
ASN 5500.0083
PRO 5510.0090
GLY 5520.0084
GLY 5530.0080
PRO 5540.0071
ILE 5550.0062
TYR 5560.0059
PHE 5570.0055
LEU 5580.0052
LYS 5590.0052
GLY 5600.0048
LEU 5610.0044
SER 5620.0040
HIS 5630.0037
LEU 5640.0039
HIS 5650.0035
ILE 5660.0040
LEU 5670.0047
ASN 5680.0050
LEU 5690.0056
GLU 5700.0058
SER 5710.0064
ASN 5720.0066
GLY 5730.0069
PHE 5740.0067
ASP 5750.0070
GLU 5760.0069
ILE 5770.0065
PRO 5780.0068
VAL 5790.0064
GLU 5800.0064
VAL 5810.0059
PHE 5820.0051
LYS 5830.0053
ASP 5840.0048
LEU 5850.0042
PHE 5860.0033
GLU 5870.0027
LEU 5880.0030
LYS 5890.0024
ILE 5900.0028
ILE 5910.0043
ASP 5920.0046
LEU 5930.0052
GLY 5940.0053
LEU 5950.0061
ASN 5960.0064
ASN 5970.0065
LEU 5980.0058
ASN 5990.0052
THR 6000.0055
LEU 6010.0053
PRO 6020.0060
ALA 6030.0057
SER 6040.0054
VAL 6050.0053
PHE 6060.0043
ASN 6070.0046
ASN 6080.0043
GLN 6090.0032
VAL 6100.0026
SER 6110.0020
LEU 6120.0020
LYS 6130.0013
SER 6140.0021
LEU 6150.0026
ASN 6160.0037
LEU 6170.0040
GLN 6180.0044
LYS 6190.0053
ASN 6200.0051
LEU 6210.0048
ILE 6220.0034
THR 6230.0022
SER 6240.0023
VAL 6250.0021
GLU 6260.0027
LYS 6270.0035
LYS 6280.0047
VAL 6290.0041
PHE 6300.0027
GLY 6310.0029
PRO 6320.0031
ALA 6330.0022
PHE 6340.0013
ARG 6350.0020
ASN 6360.0011
LEU 6370.0001
THR 6380.0013
GLU 6390.0021
LEU 6400.0018
ASP 6410.0030
MET 6420.0025
ARG 6430.0039
PHE 6440.0048
ASN 6450.0034
PRO 6460.0034
PHE 6470.0016
ASP 6480.0010
CYS 6490.0030
THR 6500.0041
CYS 6510.0056
GLU 6520.0053
SER 6530.0031
ILE 6540.0028
ALA 6550.0050
TRP 6560.0039
PHE 6570.0025
VAL 6580.0039
ASN 6590.0047
TRP 6600.0033
ILE 6610.0037
ASN 6620.0051
GLU 6630.0042
THR 6640.0028
HIS 6650.0032
THR 6660.0024
ASN 6670.0034
ILE 6680.0037
PRO 6690.0052
GLU 6700.0062
LEU 6710.0054
SER 6720.0068
SER 6730.0074
HIS 6740.0060
TYR 6750.0044
LEU 6760.0051
CYS 6770.0039
ASN 6780.0037
THR 6790.0020
PRO 6800.0031
PRO 6810.0050
HIS 6820.0067
TYR 6830.0061
HIS 6840.0061
GLY 6850.0074
PHE 6860.0072
PRO 6870.0065
VAL 6880.0048
ARG 6890.0058
LEU 6900.0076
PHE 6910.0071
ASP 6920.0089
THR 6930.0086
SER 6940.0113
SER 6950.0110
CYS 6960.0099
GLU 10.0080
ALA 20.0098
ALA 30.0079
ALA 40.0064
LYS 50.0091
MET 60.0100
GLN 70.0083
ARG 80.0081
LEU 90.0108
VAL 100.0112
LEU 110.0088
LEU 120.0102
LEU 130.0129
ALA 140.0122
ILE 150.0110
SER 160.0159
LEU 170.0192
LEU 180.0172
LEU 190.0177
TYR 200.0240
GLN 210.0268
ASP 220.0253
LEU 230.0288
PRO 240.0346
VAL 250.0369
ARG 260.0306
SER 270.0253
GLU 280.0213
PHE 290.0197
GLU 300.0191
LEU 310.0127
ASP 320.0105
ARG 330.0089
ILE 340.0081
CYS 350.0057
GLY 360.0056
TYR 370.0084
GLY 380.0080
THR 390.0060
ALA 400.0038
ARG 410.0040
CYS 420.0053
ARG 430.0054
LYS 440.0077
LYS 450.0069
CYS 460.0047
ARG 470.0051
SER 480.0064
GLN 490.0052
GLU 500.0031
TYR 510.0028
ARG 520.0026
ILE 530.0013
GLY 540.0032
ARG 550.0051
CYS 560.0066
PRO 570.0092
ASN 580.0092
THR 590.0092
TYR 600.0070
ALA 610.0054
CYS 620.0035
CYS 630.0020
LEU 640.0007
ARG 650.0025
LYS 660.0049
TRP 670.0052
ASP 680.0053
GLU 690.0071
SER 700.0063
LEU 710.0052
LEU 720.0074
ASN 730.0071
ARG 740.0051
THR 750.0068
LYS 760.0086
PRO 770.0093
GLU 780.0096
ALA 790.0122
ALA 800.0127
ALA 810.0124
LYS 820.0101
LYS 830.0061
GLU 840.0097
MET 850.0044
ASN 860.0093
LEU 870.0052
SER 880.0083
VAL 890.0058
GLY 900.0104
LEU 910.0094
GLY 920.0157
GLY 930.0219
GLY 940.0264
SER 950.0209
ASN 960.0167
LEU 970.0129
SER 980.0138
VAL 990.0122
GLY 1000.0147
LEU 1010.0142
GLY 1020.0239
GLU 1030.0293
ILE 1040.0422
GLY 1050.0522
GLY 1060.0633
GLY 1070.0483
SER 1080.0373
LYS 1090.0224
LEU 1100.0134
LEU 1110.0124
ASP 1120.0166
ILE 1130.0145
ASN 1140.0198
LEU 1150.0174
GLY 1160.0236
ARG 1170.0279
GLY 1180.0173
GLY 1190.0190
GLY 1200.0207
SER 1210.0123
MET 1220.0131
VAL 1230.0095
ASP 1240.0096
LEU 1250.0067
THR 1260.0071
PHE 1270.0065
GLY 1280.0063
GLY 1290.0072
VAL 1300.0063
GLY 1310.0079
GLY 1320.0075
GLY 1330.0061
SER 1340.0067
THR 1350.0056
PHE 1360.0073
THR 1370.0068
PHE 1380.0060
PHE 1390.0059
PRO 1400.0059
LEU 1410.0080
VAL 1420.0137
ILE 1430.0152
GLY 1440.0193
GLY 1450.0250
GLY 1460.0273
SER 1470.0247
ASP 1480.0224
ALA 1490.0185
MET 1500.0138
TYR 1510.0073
LEU 1520.0063
GLY 1530.0054
PHE 1540.0066
ALA 1550.0079
ALA 1560.0086
GLY 1570.0064
GLY 1580.0048
GLY 1590.0025
SER 1600.0025
ALA 1610.0038
GLY 1620.0039
GLY 1630.0048
GLU 1640.0056
ASN 1650.0063
HIS 1660.0079
VAL 1670.0094
ALA 1680.0115
PHE 1690.0129
GLY 1700.0152
PRO 1710.0288
GLY 1720.0259
PRO 1730.0240
GLY 1740.0167
VAL 1750.0132
ASP 1760.0089
LEU 1770.0081
THR 1780.0068
PHE 1790.0056
GLY 1800.0044
GLY 1810.0046
VAL 1820.0020
GLN 1830.0026
PHE 1840.0041
ALA 1850.0042
MET 1860.0093
VAL 1870.0153
ASN 1880.0242
ASN 1890.0379
GLY 1900.0447
PRO 1910.0457
GLY 1920.0096
PRO 1930.0332
GLY 1940.0458
GLU 1950.0166
SER 1960.0115
PHE 1970.0103
THR 1980.0075
ALA 1990.0183
GLN 2000.0228
PRO 2010.0210
ALA 2020.0186
ASP 2030.0201
MET 2040.0194
GLN 2050.0168
ALA 2060.0185
GLY 2070.0209
ILE 2080.0119
LYS 2090.0144
GLY 2100.0221
PRO 2110.0197
GLY 2120.0133
PRO 2130.0107
GLY 2140.0148
GLY 2150.0202
SER 2160.0332
ILE 2170.0298
GLN 2180.0530
VAL 2190.0499
ILE 2200.0733
ASN 2210.0568
GLY 2220.0417
SER 2230.0241
THR 2240.0104
ILE 2250.0143
GLY 2260.0440
THR 2270.0490
GLY 2280.0441
SER 2290.0375
LYS 2300.0239
LYS 2310.0194
THR 2320.0141
ILE 2330.0112
LEU 2340.0065
ILE 2350.0038
TYR 2360.0088
SER 2370.0105
ILE 2380.0139
ILE 2390.0138
GLY 2400.0178
VAL 2410.0204
LYS 2420.0216
LYS 2430.0205
GLY 2440.0203
THR 2450.0217
LEU 2460.0198
ALA 2470.0154
TRP 2480.0114
ALA 2490.0075
ARG 2500.0045
THR 2510.0057
GLY 2520.0122
PHE 2530.0113
SER 2540.0197
PRO 2550.0165
ALA 2560.0194
LYS 2570.0205
LYS 2580.0236
LEU 2590.0222
ASN 2600.0253
ALA 2610.0357
GLY 2620.0288
VAL 2630.0253
VAL 2640.0244
ARG 2650.0168
VAL 2660.0176
PHE 2670.0130
PHE 2680.0113
LEU 2690.0107
ASN 2700.0117
GLN 2710.0165
LYS 2720.0261
LYS 2730.0217
ALA 2740.0165
LYS 2750.0278
ASP 2760.0275
VAL 2770.0157
LEU 2780.0176
ARG 2790.0224
LYS 2800.0148
THR 2810.0123
SER 2820.0206
ARG 2830.0104
PRO 2840.0202
MET 2850.0180
VAL 2860.0098
ASP 2870.0206
LEU 2880.0204
THR 2890.0194
PHE 2900.0125
GLY 2910.0206
GLY 2920.0172

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.