CNRS Nantes University US2B US2B
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***  TLR_3_simulation  ***

<R2> analysis for 2608260340483950756

---  normal mode 42  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0633
THR 260.0086
LYS 270.0086
CYS 280.0080
THR 290.0061
VAL 300.0061
SER 310.0047
HIS 320.0052
GLU 330.0072
VAL 340.0072
ALA 350.0077
ASP 360.0075
CYS 370.0087
SER 380.0086
HIS 390.0088
LEU 400.0093
LYS 410.0096
LEU 420.0087
THR 430.0076
GLN 440.0072
VAL 450.0074
PRO 460.0075
ASP 470.0072
ASP 480.0074
LEU 490.0075
PRO 500.0072
THR 510.0071
ASN 520.0074
ILE 530.0074
THR 540.0074
VAL 550.0075
LEU 560.0077
ASN 570.0081
LEU 580.0087
THR 590.0090
HIS 600.0096
ASN 610.0092
GLN 620.0081
LEU 630.0067
ARG 640.0055
ARG 650.0045
LEU 660.0054
PRO 670.0043
ALA 680.0039
ALA 690.0038
ASN 700.0050
PHE 710.0054
THR 720.0048
ARG 730.0056
TYR 740.0060
SER 750.0054
GLN 760.0059
LEU 770.0060
THR 780.0067
SER 790.0070
LEU 800.0063
ASP 810.0068
VAL 820.0066
GLY 830.0074
PHE 840.0079
ASN 850.0071
THR 860.0070
ILE 870.0063
SER 880.0057
LYS 890.0051
LEU 900.0054
GLU 910.0048
PRO 920.0050
GLU 930.0037
LEU 940.0046
CYS 950.0053
GLN 960.0037
LYS 970.0035
LEU 980.0046
PRO 990.0045
MET 1000.0055
LEU 1010.0054
LYS 1020.0068
VAL 1030.0073
LEU 1040.0067
ASN 1050.0073
LEU 1060.0071
GLN 1070.0083
HIS 1080.0087
ASN 1090.0078
GLU 1100.0077
LEU 1110.0090
SER 1120.0096
GLN 1130.0093
LEU 1140.0090
SER 1150.0086
ASP 1160.0082
LYS 1170.0075
THR 1180.0076
PHE 1190.0075
ALA 1200.0071
PHE 1210.0061
CYS 1220.0064
THR 1230.0065
ASN 1240.0065
LEU 1250.0071
THR 1260.0073
GLU 1270.0079
LEU 1280.0081
HIS 1290.0087
LEU 1300.0091
MET 1310.0099
SER 1320.0105
ASN 1330.0101
SER 1340.0108
ILE 1350.0105
GLN 1360.0118
LYS 1370.0113
ILE 1380.0106
LYS 1390.0106
ASN 1400.0100
ASN 1410.0094
PRO 1420.0093
PHE 1430.0087
VAL 1440.0082
LYS 1450.0078
GLN 1460.0079
LYS 1470.0072
ASN 1480.0071
LEU 1490.0075
ILE 1500.0072
THR 1510.0083
LEU 1520.0090
ASP 1530.0096
LEU 1540.0102
SER 1550.0107
HIS 1560.0113
ASN 1570.0115
GLY 1580.0120
LEU 1590.0111
SER 1600.0112
SER 1610.0100
THR 1620.0089
LYS 1630.0092
LEU 1640.0094
GLY 1650.0094
THR 1660.0090
GLN 1670.0082
VAL 1680.0071
GLN 1690.0073
LEU 1700.0070
GLU 1710.0059
ASN 1720.0059
LEU 1730.0066
GLN 1740.0061
GLU 1750.0072
LEU 1760.0078
LEU 1770.0088
LEU 1780.0091
SER 1790.0095
ASN 1800.0106
ASN 1810.0109
LYS 1820.0108
ILE 1830.0091
GLN 1840.0086
ALA 1850.0074
LEU 1860.0061
LYS 1870.0066
SER 1880.0060
GLU 1890.0079
GLU 1900.0080
LEU 1910.0063
ASP 1920.0063
ILE 1930.0070
PHE 1940.0055
ALA 1950.0044
ASN 1960.0038
SER 1970.0040
SER 1980.0036
LEU 1990.0048
LYS 2000.0061
LYS 2010.0062
LEU 2020.0054
GLU 2030.0067
LEU 2040.0061
SER 2050.0071
SER 2060.0084
ASN 2070.0076
GLN 2080.0070
ILE 2090.0055
LYS 2100.0052
GLU 2110.0046
PHE 2120.0036
SER 2130.0050
PRO 2140.0052
GLY 2150.0044
CYS 2160.0036
PHE 2170.0025
HIS 2180.0028
ALA 2190.0037
ILE 2200.0031
GLY 2210.0016
ARG 2220.0026
LEU 2230.0036
PHE 2240.0060
GLY 2250.0069
LEU 2260.0051
PHE 2270.0061
LEU 2280.0049
ASN 2290.0067
ASN 2300.0065
VAL 2310.0049
GLN 2320.0037
LEU 2330.0030
GLY 2340.0032
PRO 2350.0042
SER 2360.0037
LEU 2370.0029
THR 2380.0045
GLU 2390.0053
LYS 2400.0042
LEU 2410.0038
CYS 2420.0058
LEU 2430.0059
GLU 2440.0043
LEU 2450.0055
ALA 2460.0069
ASN 2470.0080
THR 2480.0070
SER 2490.0080
ILE 2500.0075
ARG 2510.0107
ASN 2520.0103
LEU 2530.0087
SER 2540.0085
LEU 2550.0071
SER 2560.0081
ASN 2570.0068
SER 2580.0057
GLN 2590.0048
LEU 2600.0054
SER 2610.0044
THR 2620.0053
THR 2630.0066
SER 2640.0075
ASN 2650.0089
THR 2660.0085
THR 2670.0074
PHE 2680.0086
LEU 2690.0097
GLY 2700.0095
LEU 2710.0096
LYS 2720.0118
TRP 2730.0117
THR 2740.0113
ASN 2750.0130
LEU 2760.0129
THR 2770.0139
MET 2780.0128
LEU 2790.0111
ASP 2800.0103
LEU 2810.0100
SER 2820.0095
TYR 2830.0084
ASN 2840.0072
ASN 2850.0052
LEU 2860.0047
ASN 2870.0034
VAL 2880.0047
VAL 2890.0062
GLY 2900.0075
ASN 2910.0082
ASP 2920.0100
SER 2930.0093
PHE 2940.0105
ALA 2950.0121
TRP 2960.0122
LEU 2970.0127
PRO 2980.0148
GLN 2990.0154
LEU 3000.0138
GLU 3010.0148
TYR 3020.0138
PHE 3030.0117
PHE 3040.0107
LEU 3050.0085
GLU 3060.0089
TYR 3070.0082
ASN 3080.0059
ASN 3090.0033
ILE 3100.0027
GLN 3110.0019
HIS 3120.0028
LEU 3130.0032
PHE 3140.0054
SER 3150.0064
HIS 3160.0084
SER 3170.0072
LEU 3180.0083
HIS 3190.0102
GLY 3200.0124
LEU 3210.0121
PHE 3220.0137
ASN 3230.0149
VAL 3240.0131
ARG 3250.0137
TYR 3260.0123
LEU 3270.0099
ASN 3280.0095
LEU 3290.0069
LYS 3300.0084
ARG 3310.0075
SER 3320.0052
PHE 3330.0030
THR 3340.0036
LYS 3350.0069
GLN 3360.0098
SER 3370.0105
ILE 3380.0150
SER 3390.0162
LEU 3400.0138
ALA 3410.0123
SER 3420.0088
LEU 3430.0075
PRO 3440.0038
LYS 3450.0040
ILE 3460.0018
ASP 3470.0043
ASP 3480.0050
PHE 3490.0056
SER 3500.0051
PHE 3510.0059
GLN 3520.0080
TRP 3530.0098
LEU 3540.0098
LYS 3550.0114
CYS 3560.0127
LEU 3570.0106
GLU 3580.0113
HIS 3590.0107
LEU 3600.0082
ASN 3610.0084
MET 3620.0062
GLU 3630.0090
ASP 3640.0101
ASN 3650.0079
ASP 3660.0082
ILE 3670.0062
PRO 3680.0077
GLY 3690.0066
ILE 3700.0043
LYS 3710.0040
SER 3720.0040
ASN 3730.0037
MET 3740.0016
PHE 3750.0024
THR 3760.0046
GLY 3770.0070
LEU 3780.0068
ILE 3790.0084
ASN 3800.0096
LEU 3810.0073
LYS 3820.0086
TYR 3830.0088
LEU 3840.0069
SER 3850.0082
LEU 3860.0076
SER 3870.0101
ASN 3880.0107
SER 3890.0084
PHE 3900.0087
THR 3910.0110
SER 3920.0108
LEU 3930.0091
ARG 3940.0098
THR 3950.0085
LEU 3960.0069
THR 3970.0064
ASN 3980.0051
GLU 3990.0046
THR 4000.0045
PHE 4010.0026
VAL 4020.0021
SER 4030.0011
LEU 4040.0012
ALA 4050.0013
HIS 4060.0035
SER 4070.0038
PRO 4080.0052
LEU 4090.0049
HIS 4100.0066
ILE 4110.0075
LEU 4120.0067
ASN 4130.0084
LEU 4140.0086
THR 4150.0108
LYS 4160.0118
ASN 4170.0107
LYS 4180.0117
ILE 4190.0100
SER 4200.0107
LYS 4210.0088
ILE 4220.0072
GLU 4230.0067
SER 4240.0056
ASP 4250.0041
ALA 4260.0048
PHE 4270.0037
SER 4280.0025
TRP 4290.0014
LEU 4300.0021
GLY 4310.0017
HIS 4320.0031
LEU 4330.0041
GLU 4340.0056
VAL 4350.0068
LEU 4360.0069
ASP 4370.0083
LEU 4380.0085
GLY 4390.0100
LEU 4400.0114
ASN 4410.0113
GLU 4420.0114
ILE 4430.0096
GLY 4440.0097
GLN 4450.0082
GLU 4460.0062
LEU 4470.0051
THR 4480.0046
GLY 4490.0038
GLN 4500.0039
GLU 4510.0047
TRP 4520.0039
ARG 4530.0030
GLY 4540.0022
LEU 4550.0028
GLU 4560.0024
ASN 4570.0035
ILE 4580.0042
PHE 4590.0050
GLU 4600.0058
ILE 4610.0060
TYR 4620.0072
LEU 4630.0072
SER 4640.0083
TYR 4650.0094
ASN 4660.0093
LYS 4670.0094
TYR 4680.0080
LEU 4690.0065
GLN 4700.0053
LEU 4710.0037
THR 4720.0030
ARG 4730.0019
ASN 4740.0023
SER 4750.0032
PHE 4760.0028
ALA 4770.0019
LEU 4780.0020
VAL 4790.0025
PRO 4800.0023
SER 4810.0027
LEU 4820.0033
GLN 4830.0043
ARG 4840.0049
LEU 4850.0044
MET 4860.0060
LEU 4870.0055
ARG 4880.0066
ARG 4890.0070
VAL 4900.0064
ALA 4910.0061
LEU 4920.0049
LYS 4930.0040
ASN 4940.0028
VAL 4950.0024
ASP 4960.0014
SER 4970.0011
SER 4980.0009
PRO 4990.0010
SER 5000.0015
PRO 5010.0018
PHE 5020.0022
GLN 5030.0018
PRO 5040.0016
LEU 5050.0024
ARG 5060.0025
ASN 5070.0030
LEU 5080.0032
THR 5090.0041
ILE 5100.0043
LEU 5110.0042
ASP 5120.0047
LEU 5130.0038
SER 5140.0047
ASN 5150.0048
ASN 5160.0042
ASN 5170.0033
ILE 5180.0031
ALA 5190.0024
ASN 5200.0023
ILE 5210.0030
ASN 5220.0027
ASP 5230.0033
ASP 5240.0029
MET 5250.0029
LEU 5260.0037
GLU 5270.0034
GLY 5280.0033
LEU 5290.0035
GLU 5300.0039
LYS 5310.0042
LEU 5320.0042
GLU 5330.0047
ILE 5340.0047
LEU 5350.0045
ASP 5360.0050
LEU 5370.0047
GLN 5380.0050
HIS 5390.0048
ASN 5400.0042
ASN 5410.0048
LEU 5420.0048
ALA 5430.0051
ARG 5440.0048
LEU 5450.0047
TRP 5460.0051
LYS 5470.0052
HIS 5480.0052
ALA 5490.0053
ASN 5500.0052
PRO 5510.0051
GLY 5520.0049
GLY 5530.0047
PRO 5540.0046
ILE 5550.0046
TYR 5560.0047
PHE 5570.0047
LEU 5580.0046
LYS 5590.0047
GLY 5600.0047
LEU 5610.0047
SER 5620.0044
HIS 5630.0044
LEU 5640.0047
HIS 5650.0048
ILE 5660.0047
LEU 5670.0049
ASN 5680.0053
LEU 5690.0055
GLU 5700.0058
SER 5710.0058
ASN 5720.0058
GLY 5730.0058
PHE 5740.0057
ASP 5750.0058
GLU 5760.0057
ILE 5770.0055
PRO 5780.0053
VAL 5790.0050
GLU 5800.0049
VAL 5810.0052
PHE 5820.0047
LYS 5830.0044
ASP 5840.0043
LEU 5850.0044
PHE 5860.0040
GLU 5870.0044
LEU 5880.0045
LYS 5890.0043
ILE 5900.0046
ILE 5910.0052
ASP 5920.0057
LEU 5930.0058
GLY 5940.0061
LEU 5950.0066
ASN 5960.0068
ASN 5970.0067
LEU 5980.0060
ASN 5990.0054
THR 6000.0055
LEU 6010.0048
PRO 6020.0050
ALA 6030.0042
SER 6040.0037
VAL 6050.0043
PHE 6060.0036
ASN 6070.0029
ASN 6080.0031
GLN 6090.0033
VAL 6100.0025
SER 6110.0035
LEU 6120.0037
LYS 6130.0042
SER 6140.0047
LEU 6150.0043
ASN 6160.0052
LEU 6170.0052
GLN 6180.0057
LYS 6190.0063
ASN 6200.0062
LEU 6210.0061
ILE 6220.0048
THR 6230.0043
SER 6240.0043
VAL 6250.0032
GLU 6260.0032
LYS 6270.0025
LYS 6280.0037
VAL 6290.0035
PHE 6300.0021
GLY 6310.0014
PRO 6320.0013
ALA 6330.0023
PHE 6340.0019
ARG 6350.0022
ASN 6360.0031
LEU 6370.0037
THR 6380.0054
GLU 6390.0054
LEU 6400.0042
ASP 6410.0048
MET 6420.0037
ARG 6430.0045
PHE 6440.0049
ASN 6450.0043
PRO 6460.0044
PHE 6470.0030
ASP 6480.0048
CYS 6490.0049
THR 6500.0072
CYS 6510.0082
GLU 6520.0083
SER 6530.0061
ILE 6540.0042
ALA 6550.0059
TRP 6560.0041
PHE 6570.0024
VAL 6580.0039
ASN 6590.0050
TRP 6600.0036
ILE 6610.0042
ASN 6620.0062
GLU 6630.0058
THR 6640.0053
HIS 6650.0072
THR 6660.0056
ASN 6670.0066
ILE 6680.0056
PRO 6690.0068
GLU 6700.0065
LEU 6710.0052
SER 6720.0055
SER 6730.0053
HIS 6740.0044
TYR 6750.0025
LEU 6760.0013
CYS 6770.0022
ASN 6780.0039
THR 6790.0062
PRO 6800.0072
PRO 6810.0071
HIS 6820.0073
TYR 6830.0052
HIS 6840.0036
GLY 6850.0013
PHE 6860.0030
PRO 6870.0031
VAL 6880.0029
ARG 6890.0048
LEU 6900.0063
PHE 6910.0064
ASP 6920.0092
THR 6930.0096
SER 6940.0126
SER 6950.0130
CYS 6960.0118
GLU 10.0136
ALA 20.0099
ALA 30.0095
ALA 40.0084
LYS 50.0049
MET 60.0031
GLN 70.0051
ARG 80.0024
LEU 90.0032
VAL 100.0062
LEU 110.0060
LEU 120.0064
LEU 130.0097
ALA 140.0112
ILE 150.0107
SER 160.0164
LEU 170.0216
LEU 180.0220
LEU 190.0227
TYR 200.0309
GLN 210.0364
ASP 220.0371
LEU 230.0427
PRO 240.0531
VAL 250.0541
ARG 260.0421
SER 270.0350
GLU 280.0283
PHE 290.0222
GLU 300.0234
LEU 310.0191
ASP 320.0148
ARG 330.0115
ILE 340.0125
CYS 350.0094
GLY 360.0121
TYR 370.0172
GLY 380.0161
THR 390.0139
ALA 400.0089
ARG 410.0072
CYS 420.0056
ARG 430.0019
LYS 440.0031
LYS 450.0037
CYS 460.0025
ARG 470.0060
SER 480.0085
GLN 490.0087
GLU 500.0052
TYR 510.0018
ARG 520.0013
ILE 530.0038
GLY 540.0059
ARG 550.0068
CYS 560.0088
PRO 570.0125
ASN 580.0099
THR 590.0098
TYR 600.0053
ALA 610.0043
CYS 620.0048
CYS 630.0031
LEU 640.0058
ARG 650.0080
LYS 660.0105
TRP 670.0113
ASP 680.0112
GLU 690.0123
SER 700.0119
LEU 710.0121
LEU 720.0133
ASN 730.0127
ARG 740.0106
THR 750.0110
LYS 760.0107
PRO 770.0073
GLU 780.0118
ALA 790.0111
ALA 800.0082
ALA 810.0186
LYS 820.0200
LYS 830.0206
GLU 840.0220
MET 850.0229
ASN 860.0225
LEU 870.0184
SER 880.0186
VAL 890.0155
GLY 900.0173
LEU 910.0165
GLY 920.0212
GLY 930.0250
GLY 940.0268
SER 950.0219
ASN 960.0204
LEU 970.0181
SER 980.0206
VAL 990.0200
GLY 1000.0236
LEU 1010.0182
GLY 1020.0170
GLU 1030.0218
ILE 1040.0215
GLY 1050.0273
GLY 1060.0335
GLY 1070.0244
SER 1080.0183
LYS 1090.0128
LEU 1100.0102
LEU 1110.0149
ASP 1120.0163
ILE 1130.0150
ASN 1140.0170
LEU 1150.0166
GLY 1160.0172
ARG 1170.0201
GLY 1180.0136
GLY 1190.0196
GLY 1200.0236
SER 1210.0168
MET 1220.0166
VAL 1230.0126
ASP 1240.0141
LEU 1250.0124
THR 1260.0132
PHE 1270.0137
GLY 1280.0161
GLY 1290.0159
VAL 1300.0173
GLY 1310.0146
GLY 1320.0138
GLY 1330.0108
SER 1340.0117
THR 1350.0096
PHE 1360.0113
THR 1370.0120
PHE 1380.0113
PHE 1390.0131
PRO 1400.0124
LEU 1410.0156
VAL 1420.0169
ILE 1430.0174
GLY 1440.0186
GLY 1450.0197
GLY 1460.0223
SER 1470.0204
ASP 1480.0191
ALA 1490.0176
MET 1500.0167
TYR 1510.0136
LEU 1520.0131
GLY 1530.0140
PHE 1540.0136
ALA 1550.0143
ALA 1560.0147
GLY 1570.0128
GLY 1580.0104
GLY 1590.0076
SER 1600.0044
ALA 1610.0094
GLY 1620.0101
GLY 1630.0098
GLU 1640.0101
ASN 1650.0087
HIS 1660.0111
VAL 1670.0088
ALA 1680.0111
PHE 1690.0114
GLY 1700.0155
PRO 1710.0343
GLY 1720.0317
PRO 1730.0279
GLY 1740.0177
VAL 1750.0107
ASP 1760.0082
LEU 1770.0064
THR 1780.0087
PHE 1790.0088
GLY 1800.0119
GLY 1810.0138
VAL 1820.0117
GLN 1830.0094
PHE 1840.0062
ALA 1850.0047
MET 1860.0051
VAL 1870.0147
ASN 1880.0263
ASN 1890.0426
GLY 1900.0533
PRO 1910.0633
GLY 1920.0318
PRO 1930.0311
GLY 1940.0394
GLU 1950.0136
SER 1960.0161
PHE 1970.0131
THR 1980.0118
ALA 1990.0167
GLN 2000.0224
PRO 2010.0167
ALA 2020.0205
ASP 2030.0213
MET 2040.0161
GLN 2050.0143
ALA 2060.0171
GLY 2070.0177
ILE 2080.0115
LYS 2090.0146
GLY 2100.0155
PRO 2110.0145
GLY 2120.0086
PRO 2130.0080
GLY 2140.0169
GLY 2150.0210
SER 2160.0360
ILE 2170.0255
GLN 2180.0256
VAL 2190.0185
ILE 2200.0187
ASN 2210.0191
GLY 2220.0158
SER 2230.0147
THR 2240.0104
ILE 2250.0103
GLY 2260.0116
THR 2270.0106
GLY 2280.0098
SER 2290.0079
LYS 2300.0072
LYS 2310.0070
THR 2320.0067
ILE 2330.0075
LEU 2340.0073
ILE 2350.0083
TYR 2360.0107
SER 2370.0116
ILE 2380.0145
ILE 2390.0097
GLY 2400.0143
VAL 2410.0199
LYS 2420.0182
LYS 2430.0252
GLY 2440.0312
THR 2450.0271
LEU 2460.0229
ALA 2470.0174
TRP 2480.0150
ALA 2490.0109
ARG 2500.0105
THR 2510.0099
GLY 2520.0104
PHE 2530.0064
SER 2540.0071
PRO 2550.0030
ALA 2560.0021
LYS 2570.0019
LYS 2580.0024
LEU 2590.0046
ASN 2600.0059
ALA 2610.0066
GLY 2620.0054
VAL 2630.0073
VAL 2640.0087
ARG 2650.0079
VAL 2660.0087
PHE 2670.0056
PHE 2680.0026
LEU 2690.0067
ASN 2700.0088
GLN 2710.0165
LYS 2720.0232
LYS 2730.0211
ALA 2740.0189
LYS 2750.0279
ASP 2760.0297
VAL 2770.0165
LEU 2780.0151
ARG 2790.0189
LYS 2800.0147
THR 2810.0111
SER 2820.0152
ARG 2830.0162
PRO 2840.0215
MET 2850.0163
VAL 2860.0336
ASP 2870.0287
LEU 2880.0103
THR 2890.0157
PHE 2900.0113
GLY 2910.0073
GLY 2920.0349

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elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.