CNRS Nantes University US2B US2B
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***  TLR_3_simulation  ***

<R2> analysis for 2608260340483950756

---  normal mode 43  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0576
THR 260.0101
LYS 270.0092
CYS 280.0083
THR 290.0091
VAL 300.0086
SER 310.0067
HIS 320.0077
GLU 330.0083
VAL 340.0079
ALA 350.0077
ASP 360.0085
CYS 370.0079
SER 380.0089
HIS 390.0099
LEU 400.0091
LYS 410.0065
LEU 420.0066
THR 430.0064
GLN 440.0074
VAL 450.0068
PRO 460.0088
ASP 470.0101
ASP 480.0117
LEU 490.0105
PRO 500.0112
THR 510.0097
ASN 520.0097
ILE 530.0087
THR 540.0077
VAL 550.0074
LEU 560.0064
ASN 570.0069
LEU 580.0060
THR 590.0067
HIS 600.0068
ASN 610.0047
GLN 620.0043
LEU 630.0041
ARG 640.0052
ARG 650.0054
LEU 660.0048
PRO 670.0066
ALA 680.0060
ALA 690.0079
ASN 700.0073
PHE 710.0058
THR 720.0069
ARG 730.0081
TYR 740.0064
SER 750.0053
GLN 760.0062
LEU 770.0052
THR 780.0058
SER 790.0060
LEU 800.0045
ASP 810.0052
VAL 820.0040
GLY 830.0048
PHE 840.0043
ASN 850.0036
THR 860.0039
ILE 870.0043
SER 880.0060
LYS 890.0064
LEU 900.0055
GLU 910.0061
PRO 920.0065
GLU 930.0054
LEU 940.0037
CYS 950.0044
GLN 960.0041
LYS 970.0033
LEU 980.0031
PRO 990.0040
MET 1000.0053
LEU 1010.0058
LYS 1020.0079
VAL 1030.0075
LEU 1040.0062
ASN 1050.0060
LEU 1060.0053
GLN 1070.0053
HIS 1080.0046
ASN 1090.0044
GLU 1100.0052
LEU 1110.0055
SER 1120.0064
GLN 1130.0074
LEU 1140.0079
SER 1150.0088
ASP 1160.0102
LYS 1170.0091
THR 1180.0078
PHE 1190.0083
ALA 1200.0095
PHE 1210.0085
CYS 1220.0083
THR 1230.0101
ASN 1240.0099
LEU 1250.0092
THR 1260.0103
GLU 1270.0091
LEU 1280.0081
HIS 1290.0070
LEU 1300.0065
MET 1310.0057
SER 1320.0049
ASN 1330.0051
SER 1340.0054
ILE 1350.0063
GLN 1360.0060
LYS 1370.0075
ILE 1380.0083
LYS 1390.0097
ASN 1400.0110
ASN 1410.0113
PRO 1420.0101
PHE 1430.0104
VAL 1440.0119
LYS 1450.0119
GLN 1460.0115
LYS 1470.0130
ASN 1480.0127
LEU 1490.0112
ILE 1500.0112
THR 1510.0098
LEU 1520.0087
ASP 1530.0074
LEU 1540.0066
SER 1550.0056
HIS 1560.0047
ASN 1570.0048
GLY 1580.0050
LEU 1590.0058
SER 1600.0061
SER 1610.0066
THR 1620.0071
LYS 1630.0086
LEU 1640.0094
GLY 1650.0109
THR 1660.0125
GLN 1670.0133
VAL 1680.0132
GLN 1690.0124
LEU 1700.0116
GLU 1710.0127
ASN 1720.0127
LEU 1730.0109
GLN 1740.0104
GLU 1750.0089
LEU 1760.0073
LEU 1770.0063
LEU 1780.0052
SER 1790.0045
ASN 1800.0040
ASN 1810.0043
LYS 1820.0041
ILE 1830.0042
GLN 1840.0045
ALA 1850.0047
LEU 1860.0048
LYS 1870.0060
SER 1880.0068
GLU 1890.0085
GLU 1900.0079
LEU 1910.0079
ASP 1920.0094
ILE 1930.0103
PHE 1940.0098
ALA 1950.0104
ASN 1960.0115
SER 1970.0104
SER 1980.0099
LEU 1990.0084
LYS 2000.0088
LYS 2010.0069
LEU 2020.0055
GLU 2030.0049
LEU 2040.0037
SER 2050.0040
SER 2060.0039
ASN 2070.0035
GLN 2080.0038
ILE 2090.0037
LYS 2100.0043
GLU 2110.0043
PHE 2120.0037
SER 2130.0043
PRO 2140.0042
GLY 2150.0044
CYS 2160.0046
PHE 2170.0047
HIS 2180.0053
ALA 2190.0067
ILE 2200.0075
GLY 2210.0076
ARG 2220.0070
LEU 2230.0058
PHE 2240.0065
GLY 2250.0059
LEU 2260.0045
PHE 2270.0044
LEU 2280.0038
ASN 2290.0043
ASN 2300.0042
VAL 2310.0038
GLN 2320.0039
LEU 2330.0040
GLY 2340.0044
PRO 2350.0047
SER 2360.0046
LEU 2370.0040
THR 2380.0043
GLU 2390.0045
LYS 2400.0038
LEU 2410.0038
CYS 2420.0047
LEU 2430.0041
GLU 2440.0035
LEU 2450.0045
ALA 2460.0042
ASN 2470.0045
THR 2480.0047
SER 2490.0056
ILE 2500.0054
ARG 2510.0064
ASN 2520.0061
LEU 2530.0054
SER 2540.0052
LEU 2550.0049
SER 2560.0044
ASN 2570.0041
SER 2580.0042
GLN 2590.0041
LEU 2600.0045
SER 2610.0036
THR 2620.0041
THR 2630.0047
SER 2640.0053
ASN 2650.0059
THR 2660.0060
THR 2670.0056
PHE 2680.0059
LEU 2690.0064
GLY 2700.0064
LEU 2710.0063
LYS 2720.0070
TRP 2730.0068
THR 2740.0068
ASN 2750.0073
LEU 2760.0071
THR 2770.0071
MET 2780.0065
LEU 2790.0061
ASP 2800.0055
LEU 2810.0045
SER 2820.0037
TYR 2830.0029
ASN 2840.0034
ASN 2850.0029
LEU 2860.0030
ASN 2870.0028
VAL 2880.0035
VAL 2890.0039
GLY 2900.0047
ASN 2910.0048
ASP 2920.0055
SER 2930.0055
PHE 2940.0057
ALA 2950.0062
TRP 2960.0069
LEU 2970.0068
PRO 2980.0070
GLN 2990.0072
LEU 3000.0067
GLU 3010.0061
TYR 3020.0059
PHE 3030.0051
PHE 3040.0048
LEU 3050.0039
GLU 3060.0030
TYR 3070.0019
ASN 3080.0020
ASN 3090.0017
ILE 3100.0022
GLN 3110.0015
HIS 3120.0016
LEU 3130.0020
PHE 3140.0024
SER 3150.0025
HIS 3160.0036
SER 3170.0038
LEU 3180.0042
HIS 3190.0045
GLY 3200.0054
LEU 3210.0051
PHE 3220.0051
ASN 3230.0061
VAL 3240.0058
ARG 3250.0062
TYR 3260.0060
LEU 3270.0048
ASN 3280.0042
LEU 3290.0029
LYS 3300.0027
ARG 3310.0018
SER 3320.0020
PHE 3330.0015
THR 3340.0005
LYS 3350.0010
GLN 3360.0021
SER 3370.0028
ILE 3380.0032
SER 3390.0036
LEU 3400.0028
ALA 3410.0013
SER 3420.0009
LEU 3430.0006
PRO 3440.0009
LYS 3450.0015
ILE 3460.0016
ASP 3470.0016
ASP 3480.0023
PHE 3490.0030
SER 3500.0028
PHE 3510.0032
GLN 3520.0032
TRP 3530.0038
LEU 3540.0048
LYS 3550.0054
CYS 3560.0058
LEU 3570.0056
GLU 3580.0069
HIS 3590.0067
LEU 3600.0052
ASN 3610.0041
MET 3620.0032
GLU 3630.0028
ASP 3640.0021
ASN 3650.0020
ASP 3660.0026
ILE 3670.0031
PRO 3680.0043
GLY 3690.0049
ILE 3700.0054
LYS 3710.0055
SER 3720.0067
ASN 3730.0059
MET 3740.0047
PHE 3750.0055
THR 3760.0056
GLY 3770.0059
LEU 3780.0062
ILE 3790.0075
ASN 3800.0080
LEU 3810.0078
LYS 3820.0091
TYR 3830.0079
LEU 3840.0059
SER 3850.0050
LEU 3860.0034
SER 3870.0026
ASN 3880.0024
SER 3890.0025
PHE 3900.0036
THR 3910.0046
SER 3920.0063
LEU 3930.0064
ARG 3940.0082
THR 3950.0096
LEU 3960.0086
THR 3970.0112
ASN 3980.0129
GLU 3990.0125
THR 4000.0097
PHE 4010.0088
VAL 4020.0107
SER 4030.0094
LEU 4040.0096
ALA 4050.0120
HIS 4060.0116
SER 4070.0104
PRO 4080.0119
LEU 4090.0102
HIS 4100.0110
ILE 4110.0094
LEU 4120.0071
ASN 4130.0052
LEU 4140.0035
THR 4150.0027
LYS 4160.0034
ASN 4170.0039
LYS 4180.0060
ILE 4190.0060
SER 4200.0080
LYS 4210.0090
ILE 4220.0087
GLU 4230.0115
SER 4240.0130
ASP 4250.0135
ALA 4260.0110
PHE 4270.0108
SER 4280.0136
TRP 4290.0135
LEU 4300.0124
GLY 4310.0150
HIS 4320.0149
LEU 4330.0123
GLU 4340.0127
VAL 4350.0104
LEU 4360.0077
ASP 4370.0055
LEU 4380.0034
GLY 4390.0032
LEU 4400.0045
ASN 4410.0044
GLU 4420.0068
ILE 4430.0063
GLY 4440.0085
GLN 4450.0088
GLU 4460.0094
LEU 4470.0079
THR 4480.0105
GLY 4490.0100
GLN 4500.0127
GLU 4510.0108
TRP 4520.0107
ARG 4530.0140
GLY 4540.0156
LEU 4550.0135
GLU 4560.0168
ASN 4570.0165
ILE 4580.0132
PHE 4590.0135
GLU 4600.0107
ILE 4610.0075
TYR 4620.0060
LEU 4630.0034
SER 4640.0052
TYR 4650.0066
ASN 4660.0053
LYS 4670.0082
TYR 4680.0080
LEU 4690.0058
GLN 4700.0068
LEU 4710.0057
THR 4720.0075
ARG 4730.0076
ASN 4740.0094
SER 4750.0074
PHE 4760.0080
ALA 4770.0108
LEU 4780.0124
VAL 4790.0116
PRO 4800.0129
SER 4810.0143
LEU 4820.0116
GLN 4830.0124
ARG 4840.0105
LEU 4850.0074
MET 4860.0069
LEU 4870.0051
ARG 4880.0076
ARG 4890.0084
VAL 4900.0062
ALA 4910.0082
LEU 4920.0058
LYS 4930.0070
ASN 4940.0066
VAL 4950.0040
ASP 4960.0052
SER 4970.0054
SER 4980.0058
PRO 4990.0052
SER 5000.0038
PRO 5010.0046
PHE 5020.0047
GLN 5030.0060
PRO 5040.0085
LEU 5050.0086
ARG 5060.0100
ASN 5070.0119
LEU 5080.0098
THR 5090.0116
ILE 5100.0109
LEU 5110.0083
ASP 5120.0087
LEU 5130.0076
SER 5140.0097
ASN 5150.0104
ASN 5160.0086
ASN 5170.0095
ILE 5180.0080
ALA 5190.0084
ASN 5200.0068
ILE 5210.0060
ASN 5220.0049
ASP 5230.0048
ASP 5240.0034
MET 5250.0037
LEU 5260.0044
GLU 5270.0042
GLY 5280.0058
LEU 5290.0067
GLU 5300.0080
LYS 5310.0102
LEU 5320.0093
GLU 5330.0116
ILE 5340.0116
LEU 5350.0099
ASP 5360.0107
LEU 5370.0102
GLN 5380.0116
HIS 5390.0118
ASN 5400.0107
ASN 5410.0100
LEU 5420.0094
ALA 5430.0104
ARG 5440.0098
LEU 5450.0086
TRP 5460.0093
LYS 5470.0098
HIS 5480.0098
ALA 5490.0099
ASN 5500.0091
PRO 5510.0089
GLY 5520.0082
GLY 5530.0087
PRO 5540.0087
ILE 5550.0079
TYR 5560.0078
PHE 5570.0072
LEU 5580.0079
LYS 5590.0075
GLY 5600.0073
LEU 5610.0077
SER 5620.0084
HIS 5630.0090
LEU 5640.0092
HIS 5650.0104
ILE 5660.0121
LEU 5670.0116
ASN 5680.0120
LEU 5690.0118
GLU 5700.0128
SER 5710.0125
ASN 5720.0118
GLY 5730.0117
PHE 5740.0110
ASP 5750.0107
GLU 5760.0101
ILE 5770.0098
PRO 5780.0095
VAL 5790.0095
GLU 5800.0092
VAL 5810.0090
PHE 5820.0092
LYS 5830.0090
ASP 5840.0087
LEU 5850.0090
PHE 5860.0083
GLU 5870.0088
LEU 5880.0094
LYS 5890.0107
ILE 5900.0112
ILE 5910.0122
ASP 5920.0127
LEU 5930.0123
GLY 5940.0128
LEU 5950.0132
ASN 5960.0128
ASN 5970.0118
LEU 5980.0103
ASN 5990.0084
THR 6000.0076
LEU 6010.0083
PRO 6020.0081
ALA 6030.0076
SER 6040.0080
VAL 6050.0087
PHE 6060.0086
ASN 6070.0085
ASN 6080.0087
GLN 6090.0088
VAL 6100.0088
SER 6110.0095
LEU 6120.0099
LYS 6130.0110
SER 6140.0115
LEU 6150.0108
ASN 6160.0123
LEU 6170.0112
GLN 6180.0119
LYS 6190.0126
ASN 6200.0119
LEU 6210.0109
ILE 6220.0081
THR 6230.0069
SER 6240.0049
VAL 6250.0029
GLU 6260.0025
LYS 6270.0029
LYS 6280.0037
VAL 6290.0061
PHE 6300.0063
GLY 6310.0056
PRO 6320.0071
ALA 6330.0082
PHE 6340.0080
ARG 6350.0087
ASN 6360.0096
LEU 6370.0103
THR 6380.0127
GLU 6390.0124
LEU 6400.0103
ASP 6410.0111
MET 6420.0087
ARG 6430.0094
PHE 6440.0104
ASN 6450.0093
PRO 6460.0109
PHE 6470.0073
ASP 6480.0098
CYS 6490.0102
THR 6500.0132
CYS 6510.0133
GLU 6520.0116
SER 6530.0081
ILE 6540.0057
ALA 6550.0094
TRP 6560.0061
PHE 6570.0039
VAL 6580.0071
ASN 6590.0099
TRP 6600.0087
ILE 6610.0086
ASN 6620.0126
GLU 6630.0147
THR 6640.0141
HIS 6650.0169
THR 6660.0128
ASN 6670.0137
ILE 6680.0107
PRO 6690.0121
GLU 6700.0100
LEU 6710.0068
SER 6720.0043
SER 6730.0050
HIS 6740.0069
TYR 6750.0039
LEU 6760.0059
CYS 6770.0092
ASN 6780.0141
THR 6790.0166
PRO 6800.0193
PRO 6810.0231
HIS 6820.0226
TYR 6830.0167
HIS 6840.0167
GLY 6850.0125
PHE 6860.0099
PRO 6870.0052
VAL 6880.0052
ARG 6890.0072
LEU 6900.0107
PHE 6910.0121
ASP 6920.0174
THR 6930.0179
SER 6940.0237
SER 6950.0245
CYS 6960.0214
GLU 10.0093
ALA 20.0101
ALA 30.0087
ALA 40.0062
LYS 50.0068
MET 60.0074
GLN 70.0058
ARG 80.0041
LEU 90.0054
VAL 100.0061
LEU 110.0042
LEU 120.0039
LEU 130.0054
ALA 140.0054
ILE 150.0040
SER 160.0077
LEU 170.0090
LEU 180.0075
LEU 190.0073
TYR 200.0114
GLN 210.0126
ASP 220.0115
LEU 230.0164
PRO 240.0215
VAL 250.0240
ARG 260.0275
SER 270.0248
GLU 280.0215
PHE 290.0206
GLU 300.0213
LEU 310.0199
ASP 320.0179
ARG 330.0175
ILE 340.0166
CYS 350.0143
GLY 360.0098
TYR 370.0111
GLY 380.0138
THR 390.0127
ALA 400.0125
ARG 410.0153
CYS 420.0150
ARG 430.0151
LYS 440.0144
LYS 450.0131
CYS 460.0141
ARG 470.0183
SER 480.0198
GLN 490.0195
GLU 500.0135
TYR 510.0101
ARG 520.0078
ILE 530.0064
GLY 540.0075
ARG 550.0103
CYS 560.0136
PRO 570.0163
ASN 580.0163
THR 590.0125
TYR 600.0124
ALA 610.0117
CYS 620.0104
CYS 630.0104
LEU 640.0097
ARG 650.0135
LYS 660.0154
TRP 670.0200
ASP 680.0256
GLU 690.0408
SER 700.0409
LEU 710.0342
LEU 720.0494
ASN 730.0544
ARG 740.0436
THR 750.0515
LYS 760.0576
PRO 770.0414
GLU 780.0353
ALA 790.0297
ALA 800.0323
ALA 810.0096
LYS 820.0068
LYS 830.0063
GLU 840.0052
MET 850.0058
ASN 860.0049
LEU 870.0056
SER 880.0064
VAL 890.0070
GLY 900.0080
LEU 910.0087
GLY 920.0107
GLY 930.0122
GLY 940.0119
SER 950.0099
ASN 960.0075
LEU 970.0068
SER 980.0061
VAL 990.0055
GLY 1000.0048
LEU 1010.0070
GLY 1020.0116
GLU 1030.0145
ILE 1040.0214
GLY 1050.0261
GLY 1060.0354
GLY 1070.0269
SER 1080.0190
LYS 1090.0112
LEU 1100.0036
LEU 1110.0016
ASP 1120.0029
ILE 1130.0044
ASN 1140.0057
LEU 1150.0070
GLY 1160.0088
ARG 1170.0097
GLY 1180.0098
GLY 1190.0101
GLY 1200.0099
SER 1210.0077
MET 1220.0075
VAL 1230.0062
ASP 1240.0068
LEU 1250.0057
THR 1260.0051
PHE 1270.0037
GLY 1280.0032
GLY 1290.0041
VAL 1300.0038
GLY 1310.0080
GLY 1320.0082
GLY 1330.0082
SER 1340.0080
THR 1350.0079
PHE 1360.0065
THR 1370.0055
PHE 1380.0054
PHE 1390.0053
PRO 1400.0057
LEU 1410.0051
VAL 1420.0053
ILE 1430.0047
GLY 1440.0049
GLY 1450.0057
GLY 1460.0065
SER 1470.0060
ASP 1480.0060
ALA 1490.0046
MET 1500.0043
TYR 1510.0041
LEU 1520.0044
GLY 1530.0050
PHE 1540.0055
ALA 1550.0066
ALA 1560.0087
GLY 1570.0083
GLY 1580.0075
GLY 1590.0079
SER 1600.0081
ALA 1610.0087
GLY 1620.0075
GLY 1630.0067
GLU 1640.0054
ASN 1650.0052
HIS 1660.0069
VAL 1670.0064
ALA 1680.0072
PHE 1690.0066
GLY 1700.0080
PRO 1710.0104
GLY 1720.0101
PRO 1730.0078
GLY 1740.0076
VAL 1750.0073
ASP 1760.0102
LEU 1770.0092
THR 1780.0108
PHE 1790.0109
GLY 1800.0127
GLY 1810.0171
VAL 1820.0182
GLN 1830.0170
PHE 1840.0160
ALA 1850.0165
MET 1860.0129
VAL 1870.0126
ASN 1880.0056
ASN 1890.0115
GLY 1900.0102
PRO 1910.0118
GLY 1920.0087
PRO 1930.0218
GLY 1940.0208
GLU 1950.0050
SER 1960.0143
PHE 1970.0168
THR 1980.0056
ALA 1990.0064
GLN 2000.0053
PRO 2010.0062
ALA 2020.0110
ASP 2030.0112
MET 2040.0100
GLN 2050.0028
ALA 2060.0061
GLY 2070.0087
ILE 2080.0097
LYS 2090.0099
GLY 2100.0223
PRO 2110.0269
GLY 2120.0163
PRO 2130.0185
GLY 2140.0318
GLY 2150.0404
SER 2160.0538
ILE 2170.0500
GLN 2180.0240
VAL 2190.0290
ILE 2200.0263
ASN 2210.0217
GLY 2220.0228
SER 2230.0253
THR 2240.0216
ILE 2250.0232
GLY 2260.0243
THR 2270.0202
GLY 2280.0164
SER 2290.0103
LYS 2300.0091
LYS 2310.0135
THR 2320.0154
ILE 2330.0155
LEU 2340.0183
ILE 2350.0186
TYR 2360.0170
SER 2370.0125
ILE 2380.0076
ILE 2390.0067
GLY 2400.0112
VAL 2410.0101
LYS 2420.0223
LYS 2430.0221
GLY 2440.0281
THR 2450.0307
LEU 2460.0203
ALA 2470.0172
TRP 2480.0129
ALA 2490.0062
ARG 2500.0053
THR 2510.0102
GLY 2520.0086
PHE 2530.0087
SER 2540.0073
PRO 2550.0074
ALA 2560.0063
LYS 2570.0074
LYS 2580.0085
LEU 2590.0080
ASN 2600.0117
ALA 2610.0136
GLY 2620.0084
VAL 2630.0084
VAL 2640.0062
ARG 2650.0095
VAL 2660.0090
PHE 2670.0067
PHE 2680.0021
LEU 2690.0015
ASN 2700.0043
GLN 2710.0021
LYS 2720.0046
LYS 2730.0054
ALA 2740.0035
LYS 2750.0063
ASP 2760.0074
VAL 2770.0037
LEU 2780.0039
ARG 2790.0049
LYS 2800.0031
THR 2810.0049
SER 2820.0066
ARG 2830.0051
PRO 2840.0067
MET 2850.0050
VAL 2860.0108
ASP 2870.0091
LEU 2880.0039
THR 2890.0054
PHE 2900.0043
GLY 2910.0040
GLY 2920.0117

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elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.