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***  TLR_3_simulation  ***

<R2> analysis for 2608260340483950756

---  normal mode 45  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0978
THR 260.0058
LYS 270.0052
CYS 280.0043
THR 290.0042
VAL 300.0040
SER 310.0033
HIS 320.0031
GLU 330.0033
VAL 340.0026
ALA 350.0029
ASP 360.0032
CYS 370.0034
SER 380.0032
HIS 390.0038
LEU 400.0042
LYS 410.0034
LEU 420.0027
THR 430.0021
GLN 440.0020
VAL 450.0022
PRO 460.0032
ASP 470.0039
ASP 480.0048
LEU 490.0044
PRO 500.0050
THR 510.0048
ASN 520.0048
ILE 530.0038
THR 540.0032
VAL 550.0023
LEU 560.0022
ASN 570.0020
LEU 580.0020
THR 590.0020
HIS 600.0025
ASN 610.0025
GLN 620.0023
LEU 630.0012
ARG 640.0016
ARG 650.0017
LEU 660.0013
PRO 670.0018
ALA 680.0028
ALA 690.0029
ASN 700.0025
PHE 710.0027
THR 720.0037
ARG 730.0042
TYR 740.0037
SER 750.0043
GLN 760.0040
LEU 770.0030
THR 780.0029
SER 790.0019
LEU 800.0012
ASP 810.0008
VAL 820.0008
GLY 830.0014
PHE 840.0021
ASN 850.0019
THR 860.0027
ILE 870.0024
SER 880.0035
LYS 890.0036
LEU 900.0032
GLU 910.0035
PRO 920.0042
GLU 930.0042
LEU 940.0033
CYS 950.0038
GLN 960.0045
LYS 970.0040
LEU 980.0036
PRO 990.0045
MET 1000.0041
LEU 1010.0029
LYS 1020.0027
VAL 1030.0018
LEU 1040.0016
ASN 1050.0011
LEU 1060.0019
GLN 1070.0020
HIS 1080.0027
ASN 1090.0029
GLU 1100.0036
LEU 1110.0037
SER 1120.0047
GLN 1130.0052
LEU 1140.0050
SER 1150.0057
ASP 1160.0058
LYS 1170.0057
THR 1180.0047
PHE 1190.0043
ALA 1200.0052
PHE 1210.0050
CYS 1220.0041
THR 1230.0045
ASN 1240.0039
LEU 1250.0029
THR 1260.0022
GLU 1270.0016
LEU 1280.0020
HIS 1290.0018
LEU 1300.0025
MET 1310.0027
SER 1320.0034
ASN 1330.0036
SER 1340.0044
ILE 1350.0044
GLN 1360.0050
LYS 1370.0052
ILE 1380.0050
LYS 1390.0057
ASN 1400.0059
ASN 1410.0052
PRO 1420.0047
PHE 1430.0040
VAL 1440.0045
LYS 1450.0045
GLN 1460.0036
LYS 1470.0035
ASN 1480.0030
LEU 1490.0024
ILE 1500.0015
THR 1510.0014
LEU 1520.0019
ASP 1530.0019
LEU 1540.0026
SER 1550.0027
HIS 1560.0032
ASN 1570.0037
GLY 1580.0042
LEU 1590.0039
SER 1600.0041
SER 1610.0043
THR 1620.0035
LYS 1630.0038
LEU 1640.0036
GLY 1650.0039
THR 1660.0046
GLN 1670.0040
VAL 1680.0031
GLN 1690.0030
LEU 1700.0025
GLU 1710.0020
ASN 1720.0017
LEU 1730.0015
GLN 1740.0010
GLU 1750.0010
LEU 1760.0015
LEU 1770.0018
LEU 1780.0023
SER 1790.0025
ASN 1800.0030
ASN 1810.0036
LYS 1820.0039
ILE 1830.0035
GLN 1840.0039
ALA 1850.0035
LEU 1860.0039
LYS 1870.0039
SER 1880.0033
GLU 1890.0034
GLU 1900.0033
LEU 1910.0029
ASP 1920.0028
ILE 1930.0025
PHE 1940.0019
ALA 1950.0017
ASN 1960.0014
SER 1970.0013
SER 1980.0015
LEU 1990.0015
LYS 2000.0020
LYS 2010.0017
LEU 2020.0016
GLU 2030.0016
LEU 2040.0020
SER 2050.0020
SER 2060.0027
ASN 2070.0029
GLN 2080.0034
ILE 2090.0034
LYS 2100.0041
GLU 2110.0046
PHE 2120.0042
SER 2130.0045
PRO 2140.0048
GLY 2150.0042
CYS 2160.0038
PHE 2170.0032
HIS 2180.0035
ALA 2190.0028
ILE 2200.0021
GLY 2210.0024
ARG 2220.0027
LEU 2230.0027
PHE 2240.0032
GLY 2250.0027
LEU 2260.0023
PHE 2270.0017
LEU 2280.0018
ASN 2290.0014
ASN 2300.0018
VAL 2310.0026
GLN 2320.0033
LEU 2330.0036
GLY 2340.0039
PRO 2350.0044
SER 2360.0057
LEU 2370.0049
THR 2380.0043
GLU 2390.0054
LYS 2400.0053
LEU 2410.0046
CYS 2420.0051
LEU 2430.0059
GLU 2440.0050
LEU 2450.0046
ALA 2460.0060
ASN 2470.0062
THR 2480.0051
SER 2490.0049
ILE 2500.0042
ARG 2510.0049
ASN 2520.0038
LEU 2530.0030
SER 2540.0019
LEU 2550.0017
SER 2560.0009
ASN 2570.0012
SER 2580.0018
GLN 2590.0024
LEU 2600.0025
SER 2610.0026
THR 2620.0031
THR 2630.0037
SER 2640.0050
ASN 2650.0061
THR 2660.0068
THR 2670.0054
PHE 2680.0054
LEU 2690.0069
GLY 2700.0067
LEU 2710.0062
LYS 2720.0077
TRP 2730.0078
THR 2740.0067
ASN 2750.0069
LEU 2760.0058
THR 2770.0059
MET 2780.0047
LEU 2790.0037
ASP 2800.0026
LEU 2810.0017
SER 2820.0012
TYR 2830.0010
ASN 2840.0007
ASN 2850.0009
LEU 2860.0010
ASN 2870.0012
VAL 2880.0022
VAL 2890.0029
GLY 2900.0041
ASN 2910.0050
ASP 2920.0058
SER 2930.0050
PHE 2940.0053
ALA 2950.0066
TRP 2960.0070
LEU 2970.0065
PRO 2980.0078
GLN 2990.0075
LEU 3000.0062
GLU 3010.0066
TYR 3020.0055
PHE 3030.0045
PHE 3040.0035
LEU 3050.0027
GLU 3060.0029
TYR 3070.0025
ASN 3080.0013
ASN 3090.0010
ILE 3100.0011
GLN 3110.0008
HIS 3120.0016
LEU 3130.0026
PHE 3140.0032
SER 3150.0043
HIS 3160.0050
SER 3170.0040
LEU 3180.0046
HIS 3190.0058
GLY 3200.0065
LEU 3210.0061
PHE 3220.0073
ASN 3230.0073
VAL 3240.0063
ARG 3250.0069
TYR 3260.0062
LEU 3270.0052
ASN 3280.0047
LEU 3290.0040
LYS 3300.0043
ARG 3310.0040
SER 3320.0028
PHE 3330.0027
THR 3340.0024
LYS 3350.0037
GLN 3360.0042
SER 3370.0044
ILE 3380.0054
SER 3390.0055
LEU 3400.0041
ALA 3410.0034
SER 3420.0024
LEU 3430.0027
PRO 3440.0024
LYS 3450.0025
ILE 3460.0029
ASP 3470.0031
ASP 3480.0037
PHE 3490.0045
SER 3500.0042
PHE 3510.0049
GLN 3520.0058
TRP 3530.0058
LEU 3540.0058
LYS 3550.0070
CYS 3560.0070
LEU 3570.0064
GLU 3580.0069
HIS 3590.0063
LEU 3600.0055
ASN 3610.0054
MET 3620.0050
GLU 3630.0052
ASP 3640.0049
ASN 3650.0044
ASP 3660.0042
ILE 3670.0041
PRO 3680.0041
GLY 3690.0044
ILE 3700.0046
LYS 3710.0041
SER 3720.0045
ASN 3730.0045
MET 3740.0044
PHE 3750.0050
THR 3760.0051
GLY 3770.0055
LEU 3780.0057
ILE 3790.0063
ASN 3800.0064
LEU 3810.0058
LYS 3820.0062
TYR 3830.0060
LEU 3840.0054
SER 3850.0053
LEU 3860.0050
SER 3870.0051
ASN 3880.0049
SER 3890.0048
PHE 3900.0047
THR 3910.0045
SER 3920.0043
LEU 3930.0043
ARG 3940.0041
THR 3950.0041
LEU 3960.0040
THR 3970.0039
ASN 3980.0039
GLU 3990.0040
THR 4000.0040
PHE 4010.0043
VAL 4020.0042
SER 4030.0043
LEU 4040.0045
ALA 4050.0046
HIS 4060.0048
SER 4070.0047
PRO 4080.0050
LEU 4090.0049
HIS 4100.0051
ILE 4110.0049
LEU 4120.0046
ASN 4130.0046
LEU 4140.0043
THR 4150.0044
LYS 4160.0044
ASN 4170.0045
LYS 4180.0041
ILE 4190.0039
SER 4200.0035
LYS 4210.0032
ILE 4220.0032
GLU 4230.0032
SER 4240.0031
ASP 4250.0033
ALA 4260.0035
PHE 4270.0035
SER 4280.0035
TRP 4290.0035
LEU 4300.0035
GLY 4310.0032
HIS 4320.0033
LEU 4330.0033
GLU 4340.0034
VAL 4350.0034
LEU 4360.0031
ASP 4370.0031
LEU 4380.0030
GLY 4390.0031
LEU 4400.0031
ASN 4410.0034
GLU 4420.0032
ILE 4430.0027
GLY 4440.0023
GLN 4450.0020
GLU 4460.0014
LEU 4470.0015
THR 4480.0017
GLY 4490.0017
GLN 4500.0020
GLU 4510.0021
TRP 4520.0019
ARG 4530.0021
GLY 4540.0023
LEU 4550.0020
GLU 4560.0020
ASN 4570.0022
ILE 4580.0020
PHE 4590.0020
GLU 4600.0020
ILE 4610.0013
TYR 4620.0013
LEU 4630.0013
SER 4640.0013
TYR 4650.0014
ASN 4660.0020
LYS 4670.0021
TYR 4680.0015
LEU 4690.0011
GLN 4700.0010
LEU 4710.0011
THR 4720.0018
ARG 4730.0023
ASN 4740.0022
SER 4750.0016
PHE 4760.0011
ALA 4770.0017
LEU 4780.0018
VAL 4790.0014
PRO 4800.0016
SER 4810.0012
LEU 4820.0007
GLN 4830.0005
ARG 4840.0003
LEU 4850.0004
MET 4860.0007
LEU 4870.0004
ARG 4880.0004
ARG 4890.0003
VAL 4900.0001
ALA 4910.0003
LEU 4920.0008
LYS 4930.0009
ASN 4940.0015
VAL 4950.0021
ASP 4960.0027
SER 4970.0029
SER 4980.0032
PRO 4990.0033
SER 5000.0029
PRO 5010.0024
PHE 5020.0022
GLN 5030.0027
PRO 5040.0025
LEU 5050.0021
ARG 5060.0032
ASN 5070.0026
LEU 5080.0023
THR 5090.0021
ILE 5100.0020
LEU 5110.0020
ASP 5120.0020
LEU 5130.0018
SER 5140.0019
ASN 5150.0019
ASN 5160.0021
ASN 5170.0021
ILE 5180.0024
ALA 5190.0027
ASN 5200.0031
ILE 5210.0034
ASN 5220.0035
ASP 5230.0035
ASP 5240.0034
MET 5250.0032
LEU 5260.0035
GLU 5270.0037
GLY 5280.0035
LEU 5290.0032
GLU 5300.0032
LYS 5310.0031
LEU 5320.0029
GLU 5330.0028
ILE 5340.0026
LEU 5350.0027
ASP 5360.0034
LEU 5370.0031
GLN 5380.0035
HIS 5390.0038
ASN 5400.0034
ASN 5410.0041
LEU 5420.0038
ALA 5430.0038
ARG 5440.0042
LEU 5450.0041
TRP 5460.0045
LYS 5470.0051
HIS 5480.0056
ALA 5490.0062
ASN 5500.0061
PRO 5510.0070
GLY 5520.0067
GLY 5530.0060
PRO 5540.0050
ILE 5550.0044
TYR 5560.0044
PHE 5570.0039
LEU 5580.0037
LYS 5590.0041
GLY 5600.0041
LEU 5610.0038
SER 5620.0043
HIS 5630.0040
LEU 5640.0037
HIS 5650.0041
ILE 5660.0047
LEU 5670.0040
ASN 5680.0044
LEU 5690.0041
GLU 5700.0047
SER 5710.0053
ASN 5720.0049
GLY 5730.0051
PHE 5740.0044
ASP 5750.0045
GLU 5760.0050
ILE 5770.0047
PRO 5780.0053
VAL 5790.0055
GLU 5800.0056
VAL 5810.0047
PHE 5820.0045
LYS 5830.0053
ASP 5840.0051
LEU 5850.0046
PHE 5860.0055
GLU 5870.0052
LEU 5880.0046
LYS 5890.0052
ILE 5900.0049
ILE 5910.0052
ASP 5920.0057
LEU 5930.0050
GLY 5940.0062
LEU 5950.0072
ASN 5960.0074
ASN 5970.0076
LEU 5980.0060
ASN 5990.0060
THR 6000.0058
LEU 6010.0056
PRO 6020.0068
ALA 6030.0074
SER 6040.0072
VAL 6050.0057
PHE 6060.0059
ASN 6070.0074
ASN 6080.0067
GLN 6090.0060
VAL 6100.0074
SER 6110.0083
LEU 6120.0073
LYS 6130.0087
SER 6140.0078
LEU 6150.0061
ASN 6160.0078
LEU 6170.0065
GLN 6180.0088
LYS 6190.0101
ASN 6200.0087
LEU 6210.0096
ILE 6220.0072
THR 6230.0076
SER 6240.0067
VAL 6250.0056
GLU 6260.0074
LYS 6270.0085
LYS 6280.0093
VAL 6290.0069
PHE 6300.0062
GLY 6310.0089
PRO 6320.0091
ALA 6330.0071
PHE 6340.0085
ARG 6350.0111
ASN 6360.0123
LEU 6370.0110
THR 6380.0131
GLU 6390.0117
LEU 6400.0092
ASP 6410.0101
MET 6420.0078
ARG 6430.0104
PHE 6440.0116
ASN 6450.0095
PRO 6460.0115
PHE 6470.0083
ASP 6480.0095
CYS 6490.0082
THR 6500.0105
CYS 6510.0120
GLU 6520.0135
SER 6530.0100
ILE 6540.0070
ALA 6550.0093
TRP 6560.0091
PHE 6570.0067
VAL 6580.0073
ASN 6590.0102
TRP 6600.0100
ILE 6610.0101
ASN 6620.0119
GLU 6630.0131
THR 6640.0127
HIS 6650.0150
THR 6660.0147
ASN 6670.0158
ILE 6680.0133
PRO 6690.0155
GLU 6700.0149
LEU 6710.0126
SER 6720.0127
SER 6730.0147
HIS 6740.0133
TYR 6750.0096
LEU 6760.0106
CYS 6770.0096
ASN 6780.0136
THR 6790.0145
PRO 6800.0151
PRO 6810.0179
HIS 6820.0149
TYR 6830.0114
HIS 6840.0146
GLY 6850.0142
PHE 6860.0096
PRO 6870.0084
VAL 6880.0059
ARG 6890.0072
LEU 6900.0062
PHE 6910.0056
ASP 6920.0087
THR 6930.0120
SER 6940.0159
SER 6950.0164
CYS 6960.0170
GLU 10.0058
ALA 20.0070
ALA 30.0066
ALA 40.0045
LYS 50.0048
MET 60.0060
GLN 70.0051
ARG 80.0036
LEU 90.0049
VAL 100.0061
LEU 110.0047
LEU 120.0039
LEU 130.0058
ALA 140.0065
ILE 150.0053
SER 160.0058
LEU 170.0083
LEU 180.0083
LEU 190.0067
TYR 200.0084
GLN 210.0107
ASP 220.0096
LEU 230.0087
PRO 240.0105
VAL 250.0117
ARG 260.0099
SER 270.0084
GLU 280.0071
PHE 290.0076
GLU 300.0070
LEU 310.0040
ASP 320.0032
ARG 330.0034
ILE 340.0033
CYS 350.0031
GLY 360.0036
TYR 370.0051
GLY 380.0049
THR 390.0042
ALA 400.0027
ARG 410.0023
CYS 420.0026
ARG 430.0034
LYS 440.0044
LYS 450.0045
CYS 460.0039
ARG 470.0036
SER 480.0038
GLN 490.0029
GLU 500.0030
TYR 510.0029
ARG 520.0028
ILE 530.0024
GLY 540.0023
ARG 550.0023
CYS 560.0026
PRO 570.0027
ASN 580.0032
THR 590.0034
TYR 600.0033
ALA 610.0033
CYS 620.0027
CYS 630.0027
LEU 640.0025
ARG 650.0025
LYS 660.0053
TRP 670.0065
ASP 680.0055
GLU 690.0067
SER 700.0067
LEU 710.0099
LEU 720.0109
ASN 730.0113
ARG 740.0127
THR 750.0160
LYS 760.0184
PRO 770.0259
GLU 780.0329
ALA 790.0377
ALA 800.0356
ALA 810.0195
LYS 820.0147
LYS 830.0130
GLU 840.0123
MET 850.0087
ASN 860.0101
LEU 870.0071
SER 880.0067
VAL 890.0046
GLY 900.0057
LEU 910.0059
GLY 920.0096
GLY 930.0094
GLY 940.0084
SER 950.0048
ASN 960.0061
LEU 970.0055
SER 980.0079
VAL 990.0082
GLY 1000.0111
LEU 1010.0113
GLY 1020.0170
GLU 1030.0159
ILE 1040.0284
GLY 1050.0353
GLY 1060.0491
GLY 1070.0373
SER 1080.0266
LYS 1090.0128
LEU 1100.0036
LEU 1110.0060
ASP 1120.0066
ILE 1130.0051
ASN 1140.0088
LEU 1150.0088
GLY 1160.0137
ARG 1170.0182
GLY 1180.0157
GLY 1190.0178
GLY 1200.0171
SER 1210.0102
MET 1220.0098
VAL 1230.0063
ASP 1240.0079
LEU 1250.0069
THR 1260.0077
PHE 1270.0085
GLY 1280.0089
GLY 1290.0104
VAL 1300.0110
GLY 1310.0018
GLY 1320.0032
GLY 1330.0032
SER 1340.0063
THR 1350.0079
PHE 1360.0112
THR 1370.0132
PHE 1380.0113
PHE 1390.0129
PRO 1400.0114
LEU 1410.0087
VAL 1420.0085
ILE 1430.0069
GLY 1440.0072
GLY 1450.0077
GLY 1460.0072
SER 1470.0065
ASP 1480.0084
ALA 1490.0047
MET 1500.0039
TYR 1510.0014
LEU 1520.0038
GLY 1530.0071
PHE 1540.0100
ALA 1550.0136
ALA 1560.0108
GLY 1570.0086
GLY 1580.0051
GLY 1590.0038
SER 1600.0035
ALA 1610.0072
GLY 1620.0082
GLY 1630.0090
GLU 1640.0102
ASN 1650.0101
HIS 1660.0103
VAL 1670.0089
ALA 1680.0091
PHE 1690.0079
GLY 1700.0104
PRO 1710.0210
GLY 1720.0195
PRO 1730.0130
GLY 1740.0118
VAL 1750.0101
ASP 1760.0140
LEU 1770.0144
THR 1780.0157
PHE 1790.0173
GLY 1800.0190
GLY 1810.0225
VAL 1820.0261
GLN 1830.0244
PHE 1840.0251
ALA 1850.0257
MET 1860.0224
VAL 1870.0240
ASN 1880.0161
ASN 1890.0284
GLY 1900.0279
PRO 1910.0339
GLY 1920.0127
PRO 1930.0156
GLY 1940.0237
GLU 1950.0085
SER 1960.0159
PHE 1970.0157
THR 1980.0099
ALA 1990.0080
GLN 2000.0059
PRO 2010.0035
ALA 2020.0015
ASP 2030.0038
MET 2040.0065
GLN 2050.0056
ALA 2060.0066
GLY 2070.0184
ILE 2080.0048
LYS 2090.0128
GLY 2100.0090
PRO 2110.0104
GLY 2120.0099
PRO 2130.0088
GLY 2140.0310
GLY 2150.0374
SER 2160.0729
ILE 2170.0582
GLN 2180.0349
VAL 2190.0272
ILE 2200.0978
ASN 2210.0796
GLY 2220.0629
SER 2230.0601
THR 2240.0465
ILE 2250.0289
GLY 2260.0253
THR 2270.0253
GLY 2280.0206
SER 2290.0185
LYS 2300.0135
LYS 2310.0174
THR 2320.0185
ILE 2330.0157
LEU 2340.0182
ILE 2350.0173
TYR 2360.0150
SER 2370.0153
ILE 2380.0176
ILE 2390.0286
GLY 2400.0367
VAL 2410.0327
LYS 2420.0502
LYS 2430.0372
GLY 2440.0406
THR 2450.0565
LEU 2460.0386
ALA 2470.0413
TRP 2480.0319
ALA 2490.0316
ARG 2500.0200
THR 2510.0151
GLY 2520.0134
PHE 2530.0125
SER 2540.0121
PRO 2550.0083
ALA 2560.0110
LYS 2570.0123
LYS 2580.0105
LEU 2590.0131
ASN 2600.0149
ALA 2610.0140
GLY 2620.0096
VAL 2630.0108
VAL 2640.0062
ARG 2650.0040
VAL 2660.0071
PHE 2670.0025
PHE 2680.0039
LEU 2690.0035
ASN 2700.0037
GLN 2710.0049
LYS 2720.0031
LYS 2730.0031
ALA 2740.0038
LYS 2750.0046
ASP 2760.0030
VAL 2770.0021
LEU 2780.0046
ARG 2790.0035
LYS 2800.0018
THR 2810.0059
SER 2820.0047
ARG 2830.0037
PRO 2840.0032
MET 2850.0045
VAL 2860.0089
ASP 2870.0070
LEU 2880.0047
THR 2890.0045
PHE 2900.0046
GLY 2910.0070
GLY 2920.0106

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.