CNRS Nantes University US2B US2B
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***  TLR_3_simulation  ***

<R2> analysis for 2608260340483950756

---  normal mode 47  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0886
THR 260.0124
LYS 270.0107
CYS 280.0088
THR 290.0097
VAL 300.0088
SER 310.0076
HIS 320.0074
GLU 330.0064
VAL 340.0052
ALA 350.0051
ASP 360.0062
CYS 370.0059
SER 380.0070
HIS 390.0088
LEU 400.0081
LYS 410.0048
LEU 420.0034
THR 430.0021
GLN 440.0041
VAL 450.0042
PRO 460.0061
ASP 470.0081
ASP 480.0097
LEU 490.0083
PRO 500.0092
THR 510.0080
ASN 520.0073
ILE 530.0054
THR 540.0034
VAL 550.0026
LEU 560.0021
ASN 570.0032
LEU 580.0025
THR 590.0045
HIS 600.0055
ASN 610.0026
GLN 620.0012
LEU 630.0015
ARG 640.0036
ARG 650.0050
LEU 660.0047
PRO 670.0067
ALA 680.0076
ALA 690.0087
ASN 700.0069
PHE 710.0060
THR 720.0082
ARG 730.0080
TYR 740.0056
SER 750.0059
GLN 760.0047
LEU 770.0028
THR 780.0022
SER 790.0027
LEU 800.0025
ASP 810.0034
VAL 820.0032
GLY 830.0046
PHE 840.0046
ASN 850.0035
THR 860.0038
ILE 870.0047
SER 880.0063
LYS 890.0071
LEU 900.0067
GLU 910.0076
PRO 920.0085
GLU 930.0081
LEU 940.0060
CYS 950.0062
GLN 960.0078
LYS 970.0067
LEU 980.0049
PRO 990.0055
MET 1000.0040
LEU 1010.0052
LYS 1020.0063
VAL 1030.0062
LEU 1040.0059
ASN 1050.0058
LEU 1060.0060
GLN 1070.0061
HIS 1080.0056
ASN 1090.0053
GLU 1100.0055
LEU 1110.0056
SER 1120.0062
GLN 1130.0071
LEU 1140.0077
SER 1150.0085
ASP 1160.0095
LYS 1170.0088
THR 1180.0078
PHE 1190.0079
ALA 1200.0087
PHE 1210.0084
CYS 1220.0075
THR 1230.0088
ASN 1240.0081
LEU 1250.0079
THR 1260.0095
GLU 1270.0088
LEU 1280.0079
HIS 1290.0073
LEU 1300.0068
MET 1310.0068
SER 1320.0061
ASN 1330.0057
SER 1340.0053
ILE 1350.0056
GLN 1360.0051
LYS 1370.0063
ILE 1380.0072
LYS 1390.0084
ASN 1400.0097
ASN 1410.0096
PRO 1420.0085
PHE 1430.0088
VAL 1440.0101
LYS 1450.0099
GLN 1460.0098
LYS 1470.0116
ASN 1480.0115
LEU 1490.0103
ILE 1500.0110
THR 1510.0099
LEU 1520.0084
ASP 1530.0076
LEU 1540.0064
SER 1550.0064
HIS 1560.0065
ASN 1570.0056
GLY 1580.0053
LEU 1590.0049
SER 1600.0053
SER 1610.0062
THR 1620.0065
LYS 1630.0075
LEU 1640.0077
GLY 1650.0091
THR 1660.0114
GLN 1670.0120
VAL 1680.0122
GLN 1690.0111
LEU 1700.0105
GLU 1710.0128
ASN 1720.0130
LEU 1730.0109
GLN 1740.0114
GLU 1750.0097
LEU 1760.0076
LEU 1770.0071
LEU 1780.0055
SER 1790.0063
ASN 1800.0069
ASN 1810.0066
LYS 1820.0066
ILE 1830.0056
GLN 1840.0067
ALA 1850.0062
LEU 1860.0065
LYS 1870.0079
SER 1880.0089
GLU 1890.0097
GLU 1900.0079
LEU 1910.0082
ASP 1920.0101
ILE 1930.0100
PHE 1940.0100
ALA 1950.0118
ASN 1960.0133
SER 1970.0114
SER 1980.0119
LEU 1990.0098
LYS 2000.0108
LYS 2010.0089
LEU 2020.0065
GLU 2030.0064
LEU 2040.0050
SER 2050.0069
SER 2060.0087
ASN 2070.0072
GLN 2080.0082
ILE 2090.0067
LYS 2100.0083
GLU 2110.0080
PHE 2120.0069
SER 2130.0085
PRO 2140.0092
GLY 2150.0091
CYS 2160.0074
PHE 2170.0070
HIS 2180.0090
ALA 2190.0094
ILE 2200.0091
GLY 2210.0108
ARG 2220.0103
LEU 2230.0080
PHE 2240.0091
GLY 2250.0075
LEU 2260.0055
PHE 2270.0063
LEU 2280.0058
ASN 2290.0082
ASN 2300.0098
VAL 2310.0086
GLN 2320.0097
LEU 2330.0078
GLY 2340.0080
PRO 2350.0068
SER 2360.0084
LEU 2370.0074
THR 2380.0052
GLU 2390.0061
LYS 2400.0070
LEU 2410.0052
CYS 2420.0049
LEU 2430.0070
GLU 2440.0064
LEU 2450.0054
ALA 2460.0072
ASN 2470.0093
THR 2480.0079
SER 2490.0087
ILE 2500.0066
ARG 2510.0082
ASN 2520.0074
LEU 2530.0052
SER 2540.0064
LEU 2550.0060
SER 2560.0084
ASN 2570.0098
SER 2580.0082
GLN 2590.0091
LEU 2600.0067
SER 2610.0070
THR 2620.0052
THR 2630.0034
SER 2640.0048
ASN 2650.0057
THR 2660.0070
THR 2670.0048
PHE 2680.0037
LEU 2690.0065
GLY 2700.0063
LEU 2710.0052
LYS 2720.0078
TRP 2730.0085
THR 2740.0068
ASN 2750.0080
LEU 2760.0064
THR 2770.0083
MET 2780.0077
LEU 2790.0058
ASP 2800.0069
LEU 2810.0061
SER 2820.0083
TYR 2830.0095
ASN 2840.0078
ASN 2850.0081
LEU 2860.0049
ASN 2870.0046
VAL 2880.0033
VAL 2890.0013
GLY 2900.0034
ASN 2910.0050
ASP 2920.0057
SER 2930.0035
PHE 2940.0039
ALA 2950.0064
TRP 2960.0063
LEU 2970.0059
PRO 2980.0089
GLN 2990.0091
LEU 3000.0076
GLU 3010.0109
TYR 3020.0102
PHE 3030.0078
PHE 3040.0080
LEU 3050.0062
GLU 3060.0085
TYR 3070.0088
ASN 3080.0066
ASN 3090.0056
ILE 3100.0031
GLN 3110.0024
HIS 3120.0012
LEU 3130.0018
PHE 3140.0038
SER 3150.0061
HIS 3160.0063
SER 3170.0037
LEU 3180.0049
HIS 3190.0068
GLY 3200.0079
LEU 3210.0082
PHE 3220.0110
ASN 3230.0116
VAL 3240.0103
ARG 3250.0124
TYR 3260.0119
LEU 3270.0096
ASN 3280.0094
LEU 3290.0075
LYS 3300.0090
ARG 3310.0077
SER 3320.0059
PHE 3330.0044
THR 3340.0047
LYS 3350.0062
GLN 3360.0055
SER 3370.0070
ILE 3380.0070
SER 3390.0086
LEU 3400.0077
ALA 3410.0049
SER 3420.0045
LEU 3430.0022
PRO 3440.0011
LYS 3450.0015
ILE 3460.0031
ASP 3470.0050
ASP 3480.0071
PHE 3490.0084
SER 3500.0067
PHE 3510.0082
GLN 3520.0103
TRP 3530.0097
LEU 3540.0101
LYS 3550.0127
CYS 3560.0139
LEU 3570.0126
GLU 3580.0142
HIS 3590.0130
LEU 3600.0108
ASN 3610.0104
MET 3620.0083
GLU 3630.0090
ASP 3640.0081
ASN 3650.0059
ASP 3660.0043
ILE 3670.0038
PRO 3680.0027
GLY 3690.0048
ILE 3700.0068
LYS 3710.0069
SER 3720.0091
ASN 3730.0094
MET 3740.0080
PHE 3750.0096
THR 3760.0113
GLY 3770.0124
LEU 3780.0124
ILE 3790.0146
ASN 3800.0149
LEU 3810.0137
LYS 3820.0147
TYR 3830.0134
LEU 3840.0114
SER 3850.0104
LEU 3860.0087
SER 3870.0087
ASN 3880.0072
SER 3890.0065
PHE 3900.0051
THR 3910.0041
SER 3920.0037
LEU 3930.0049
ARG 3940.0045
THR 3950.0058
LEU 3960.0070
THR 3970.0079
ASN 3980.0091
GLU 3990.0098
THR 4000.0091
PHE 4010.0100
VAL 4020.0111
SER 4030.0112
LEU 4040.0118
ALA 4050.0131
HIS 4060.0141
SER 4070.0135
PRO 4080.0149
LEU 4090.0134
HIS 4100.0141
ILE 4110.0123
LEU 4120.0108
ASN 4130.0097
LEU 4140.0082
THR 4150.0077
LYS 4160.0064
ASN 4170.0059
LYS 4180.0045
ILE 4190.0051
SER 4200.0044
LYS 4210.0054
ILE 4220.0066
GLU 4230.0074
SER 4240.0084
ASP 4250.0094
ALA 4260.0092
PHE 4270.0098
SER 4280.0110
TRP 4290.0116
LEU 4300.0115
GLY 4310.0127
HIS 4320.0131
LEU 4330.0117
GLU 4340.0114
VAL 4350.0103
LEU 4360.0090
ASP 4370.0082
LEU 4380.0071
GLY 4390.0064
LEU 4400.0057
ASN 4410.0053
GLU 4420.0042
ILE 4430.0048
GLY 4440.0042
GLN 4450.0051
GLU 4460.0057
LEU 4470.0060
THR 4480.0068
GLY 4490.0069
GLN 4500.0081
GLU 4510.0082
TRP 4520.0084
ARG 4530.0096
GLY 4540.0106
LEU 4550.0099
GLU 4560.0105
ASN 4570.0105
ILE 4580.0093
PHE 4590.0087
GLU 4600.0079
ILE 4610.0068
TYR 4620.0063
LEU 4630.0057
SER 4640.0051
TYR 4650.0047
ASN 4660.0046
LYS 4670.0040
TYR 4680.0039
LEU 4690.0044
GLN 4700.0047
LEU 4710.0048
THR 4720.0055
ARG 4730.0053
ASN 4740.0062
SER 4750.0060
PHE 4760.0059
ALA 4770.0064
LEU 4780.0073
VAL 4790.0068
PRO 4800.0062
SER 4810.0064
LEU 4820.0060
GLN 4830.0054
ARG 4840.0053
LEU 4850.0049
MET 4860.0044
LEU 4870.0042
ARG 4880.0039
ARG 4890.0038
VAL 4900.0041
ALA 4910.0036
LEU 4920.0037
LYS 4930.0040
ASN 4940.0044
VAL 4950.0041
ASP 4960.0042
SER 4970.0049
SER 4980.0052
PRO 4990.0048
SER 5000.0042
PRO 5010.0045
PHE 5020.0037
GLN 5030.0037
PRO 5040.0043
LEU 5050.0039
ARG 5060.0025
ASN 5070.0034
LEU 5080.0036
THR 5090.0039
ILE 5100.0044
LEU 5110.0036
ASP 5120.0038
LEU 5130.0036
SER 5140.0036
ASN 5150.0038
ASN 5160.0042
ASN 5170.0037
ILE 5180.0038
ALA 5190.0039
ASN 5200.0043
ILE 5210.0040
ASN 5220.0040
ASP 5230.0036
ASP 5240.0035
MET 5250.0035
LEU 5260.0029
GLU 5270.0028
GLY 5280.0028
LEU 5290.0031
GLU 5300.0035
LYS 5310.0041
LEU 5320.0039
GLU 5330.0046
ILE 5340.0048
LEU 5350.0042
ASP 5360.0042
LEU 5370.0040
GLN 5380.0043
HIS 5390.0047
ASN 5400.0046
ASN 5410.0048
LEU 5420.0044
ALA 5430.0042
ARG 5440.0048
LEU 5450.0046
TRP 5460.0045
LYS 5470.0051
HIS 5480.0055
ALA 5490.0062
ASN 5500.0061
PRO 5510.0070
GLY 5520.0066
GLY 5530.0058
PRO 5540.0047
ILE 5550.0042
TYR 5560.0036
PHE 5570.0035
LEU 5580.0031
LYS 5590.0031
GLY 5600.0031
LEU 5610.0030
SER 5620.0034
HIS 5630.0037
LEU 5640.0036
HIS 5650.0041
ILE 5660.0048
LEU 5670.0043
ASN 5680.0048
LEU 5690.0045
GLU 5700.0051
SER 5710.0053
ASN 5720.0053
GLY 5730.0052
PHE 5740.0046
ASP 5750.0046
GLU 5760.0048
ILE 5770.0043
PRO 5780.0044
VAL 5790.0043
GLU 5800.0041
VAL 5810.0035
PHE 5820.0033
LYS 5830.0035
ASP 5840.0034
LEU 5850.0034
PHE 5860.0035
GLU 5870.0036
LEU 5880.0032
LYS 5890.0041
ILE 5900.0041
ILE 5910.0046
ASP 5920.0053
LEU 5930.0049
GLY 5940.0056
LEU 5950.0066
ASN 5960.0070
ASN 5970.0071
LEU 5980.0058
ASN 5990.0057
THR 6000.0056
LEU 6010.0048
PRO 6020.0053
ALA 6030.0053
SER 6040.0047
VAL 6050.0041
PHE 6060.0038
ASN 6070.0042
ASN 6080.0039
GLN 6090.0037
VAL 6100.0042
SER 6110.0051
LEU 6120.0048
LYS 6130.0060
SER 6140.0057
LEU 6150.0046
ASN 6160.0062
LEU 6170.0056
GLN 6180.0069
LYS 6190.0082
ASN 6200.0076
LEU 6210.0085
ILE 6220.0069
THR 6230.0073
SER 6240.0068
VAL 6250.0056
GLU 6260.0061
LYS 6270.0060
LYS 6280.0064
VAL 6290.0049
PHE 6300.0041
GLY 6310.0055
PRO 6320.0052
ALA 6330.0041
PHE 6340.0051
ARG 6350.0066
ASN 6360.0076
LEU 6370.0070
THR 6380.0087
GLU 6390.0079
LEU 6400.0062
ASP 6410.0071
MET 6420.0056
ARG 6430.0071
PHE 6440.0084
ASN 6450.0076
PRO 6460.0099
PHE 6470.0079
ASP 6480.0099
CYS 6490.0095
THR 6500.0120
CYS 6510.0130
GLU 6520.0133
SER 6530.0104
ILE 6540.0078
ALA 6550.0097
TRP 6560.0077
PHE 6570.0053
VAL 6580.0061
ASN 6590.0082
TRP 6600.0069
ILE 6610.0060
ASN 6620.0086
GLU 6630.0094
THR 6640.0085
HIS 6650.0110
THR 6660.0098
ASN 6670.0105
ILE 6680.0086
PRO 6690.0099
GLU 6700.0090
LEU 6710.0069
SER 6720.0062
SER 6730.0077
HIS 6740.0079
TYR 6750.0057
LEU 6760.0070
CYS 6770.0084
ASN 6780.0120
THR 6790.0140
PRO 6800.0153
PRO 6810.0172
HIS 6820.0156
TYR 6830.0119
HIS 6840.0127
GLY 6850.0103
PHE 6860.0071
PRO 6870.0050
VAL 6880.0049
ARG 6890.0050
LEU 6900.0059
PHE 6910.0081
ASP 6920.0120
THR 6930.0138
SER 6940.0179
SER 6950.0191
CYS 6960.0182
GLU 10.0108
ALA 20.0123
ALA 30.0113
ALA 40.0085
LYS 50.0095
MET 60.0107
GLN 70.0091
ARG 80.0077
LEU 90.0098
VAL 100.0109
LEU 110.0085
LEU 120.0085
LEU 130.0107
ALA 140.0110
ILE 150.0101
SER 160.0104
LEU 170.0109
LEU 180.0121
LEU 190.0113
TYR 200.0120
GLN 210.0146
ASP 220.0165
LEU 230.0173
PRO 240.0224
VAL 250.0211
ARG 260.0192
SER 270.0172
GLU 280.0140
PHE 290.0136
GLU 300.0143
LEU 310.0159
ASP 320.0144
ARG 330.0146
ILE 340.0147
CYS 350.0133
GLY 360.0107
TYR 370.0126
GLY 380.0151
THR 390.0144
ALA 400.0133
ARG 410.0149
CYS 420.0142
ARG 430.0150
LYS 440.0143
LYS 450.0141
CYS 460.0156
ARG 470.0202
SER 480.0220
GLN 490.0211
GLU 500.0160
TYR 510.0123
ARG 520.0093
ILE 530.0067
GLY 540.0055
ARG 550.0077
CYS 560.0111
PRO 570.0128
ASN 580.0134
THR 590.0098
TYR 600.0108
ALA 610.0104
CYS 620.0100
CYS 630.0120
LEU 640.0117
ARG 650.0152
LYS 660.0125
TRP 670.0091
ASP 680.0174
GLU 690.0264
SER 700.0255
LEU 710.0132
LEU 720.0227
ASN 730.0289
ARG 740.0196
THR 750.0171
LYS 760.0261
PRO 770.0160
GLU 780.0434
ALA 790.0396
ALA 800.0200
ALA 810.0095
LYS 820.0118
LYS 830.0131
GLU 840.0154
MET 850.0171
ASN 860.0175
LEU 870.0150
SER 880.0155
VAL 890.0127
GLY 900.0153
LEU 910.0156
GLY 920.0213
GLY 930.0281
GLY 940.0291
SER 950.0227
ASN 960.0179
LEU 970.0130
SER 980.0142
VAL 990.0115
GLY 1000.0147
LEU 1010.0144
GLY 1020.0159
GLU 1030.0158
ILE 1040.0166
GLY 1050.0169
GLY 1060.0173
GLY 1070.0136
SER 1080.0115
LYS 1090.0095
LEU 1100.0076
LEU 1110.0082
ASP 1120.0047
ILE 1130.0057
ASN 1140.0067
LEU 1150.0079
GLY 1160.0131
ARG 1170.0145
GLY 1180.0156
GLY 1190.0127
GLY 1200.0110
SER 1210.0097
MET 1220.0099
VAL 1230.0093
ASP 1240.0118
LEU 1250.0120
THR 1260.0134
PHE 1270.0140
GLY 1280.0153
GLY 1290.0163
VAL 1300.0169
GLY 1310.0147
GLY 1320.0142
GLY 1330.0116
SER 1340.0129
THR 1350.0105
PHE 1360.0115
THR 1370.0093
PHE 1380.0077
PHE 1390.0072
PRO 1400.0048
LEU 1410.0025
VAL 1420.0036
ILE 1430.0035
GLY 1440.0065
GLY 1450.0095
GLY 1460.0087
SER 1470.0075
ASP 1480.0078
ALA 1490.0062
MET 1500.0061
TYR 1510.0070
LEU 1520.0084
GLY 1530.0098
PHE 1540.0119
ALA 1550.0138
ALA 1560.0153
GLY 1570.0125
GLY 1580.0104
GLY 1590.0074
SER 1600.0060
ALA 1610.0101
GLY 1620.0108
GLY 1630.0107
GLU 1640.0113
ASN 1650.0104
HIS 1660.0115
VAL 1670.0095
ALA 1680.0090
PHE 1690.0073
GLY 1700.0076
PRO 1710.0089
GLY 1720.0089
PRO 1730.0069
GLY 1740.0062
VAL 1750.0064
ASP 1760.0089
LEU 1770.0094
THR 1780.0117
PHE 1790.0129
GLY 1800.0154
GLY 1810.0178
VAL 1820.0169
GLN 1830.0146
PHE 1840.0125
ALA 1850.0112
MET 1860.0070
VAL 1870.0071
ASN 1880.0024
ASN 1890.0043
GLY 1900.0033
PRO 1910.0050
GLY 1920.0036
PRO 1930.0024
GLY 1940.0030
GLU 1950.0016
SER 1960.0036
PHE 1970.0037
THR 1980.0035
ALA 1990.0052
GLN 2000.0020
PRO 2010.0031
ALA 2020.0019
ASP 2030.0064
MET 2040.0084
GLN 2050.0092
ALA 2060.0111
GLY 2070.0177
ILE 2080.0068
LYS 2090.0113
GLY 2100.0172
PRO 2110.0176
GLY 2120.0062
PRO 2130.0137
GLY 2140.0412
GLY 2150.0527
SER 2160.0886
ILE 2170.0755
GLN 2180.0298
VAL 2190.0434
ILE 2200.0345
ASN 2210.0223
GLY 2220.0226
SER 2230.0247
THR 2240.0179
ILE 2250.0176
GLY 2260.0171
THR 2270.0147
GLY 2280.0113
SER 2290.0089
LYS 2300.0091
LYS 2310.0116
THR 2320.0129
ILE 2330.0102
LEU 2340.0117
ILE 2350.0102
TYR 2360.0036
SER 2370.0090
ILE 2380.0111
ILE 2390.0138
GLY 2400.0166
VAL 2410.0147
LYS 2420.0120
LYS 2430.0046
GLY 2440.0073
THR 2450.0090
LEU 2460.0042
ALA 2470.0099
TRP 2480.0120
ALA 2490.0173
ARG 2500.0189
THR 2510.0183
GLY 2520.0140
PHE 2530.0117
SER 2540.0083
PRO 2550.0072
ALA 2560.0100
LYS 2570.0106
LYS 2580.0107
LEU 2590.0181
ASN 2600.0210
ALA 2610.0254
GLY 2620.0220
VAL 2630.0191
VAL 2640.0183
ARG 2650.0145
VAL 2660.0129
PHE 2670.0095
PHE 2680.0121
LEU 2690.0156
ASN 2700.0252
GLN 2710.0193
LYS 2720.0193
LYS 2730.0205
ALA 2740.0185
LYS 2750.0165
ASP 2760.0184
VAL 2770.0198
LEU 2780.0195
ARG 2790.0183
LYS 2800.0191
THR 2810.0224
SER 2820.0087
ARG 2830.0077
PRO 2840.0069
MET 2850.0193
VAL 2860.0237
ASP 2870.0212
LEU 2880.0162
THR 2890.0164
PHE 2900.0105
GLY 2910.0211
GLY 2920.0259

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elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.