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***  TLR_3_simulation  ***

<R2> analysis for 2608260340483950756

---  normal mode 50  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0917
THR 260.0073
LYS 270.0067
CYS 280.0053
THR 290.0058
VAL 300.0070
SER 310.0084
HIS 320.0097
GLU 330.0079
VAL 340.0062
ALA 350.0042
ASP 360.0028
CYS 370.0022
SER 380.0017
HIS 390.0037
LEU 400.0045
LYS 410.0048
LEU 420.0043
THR 430.0046
GLN 440.0041
VAL 450.0033
PRO 460.0040
ASP 470.0048
ASP 480.0057
LEU 490.0052
PRO 500.0061
THR 510.0055
ASN 520.0064
ILE 530.0051
THR 540.0054
VAL 550.0045
LEU 560.0027
ASN 570.0021
LEU 580.0018
THR 590.0028
HIS 600.0038
ASN 610.0038
GLN 620.0045
LEU 630.0034
ARG 640.0038
ARG 650.0027
LEU 660.0026
PRO 670.0025
ALA 680.0025
ALA 690.0028
ASN 700.0029
PHE 710.0026
THR 720.0031
ARG 730.0038
TYR 740.0037
SER 750.0042
GLN 760.0044
LEU 770.0036
THR 780.0043
SER 790.0037
LEU 800.0030
ASP 810.0028
VAL 820.0029
GLY 830.0037
PHE 840.0042
ASN 850.0041
THR 860.0039
ILE 870.0034
SER 880.0035
LYS 890.0031
LEU 900.0029
GLU 910.0028
PRO 920.0031
GLU 930.0031
LEU 940.0030
CYS 950.0033
GLN 960.0034
LYS 970.0033
LEU 980.0034
PRO 990.0039
MET 1000.0040
LEU 1010.0035
LYS 1020.0036
VAL 1030.0035
LEU 1040.0035
ASN 1050.0037
LEU 1060.0035
GLN 1070.0039
HIS 1080.0042
ASN 1090.0039
GLU 1100.0039
LEU 1110.0034
SER 1120.0029
GLN 1130.0028
LEU 1140.0026
SER 1150.0028
ASP 1160.0029
LYS 1170.0032
THR 1180.0032
PHE 1190.0030
ALA 1200.0030
PHE 1210.0034
CYS 1220.0033
THR 1230.0032
ASN 1240.0032
LEU 1250.0032
THR 1260.0031
GLU 1270.0033
LEU 1280.0032
HIS 1290.0034
LEU 1300.0032
MET 1310.0035
SER 1320.0035
ASN 1330.0033
SER 1340.0029
ILE 1350.0024
GLN 1360.0016
LYS 1370.0016
ILE 1380.0015
LYS 1390.0020
ASN 1400.0020
ASN 1410.0017
PRO 1420.0019
PHE 1430.0017
VAL 1440.0015
LYS 1450.0019
GLN 1460.0020
LYS 1470.0019
ASN 1480.0027
LEU 1490.0027
ILE 1500.0033
THR 1510.0033
LEU 1520.0027
ASP 1530.0029
LEU 1540.0024
SER 1550.0027
HIS 1560.0026
ASN 1570.0021
GLY 1580.0015
LEU 1590.0008
SER 1600.0008
SER 1610.0013
THR 1620.0014
LYS 1630.0013
LEU 1640.0008
GLY 1650.0009
THR 1660.0021
GLN 1670.0019
VAL 1680.0023
GLN 1690.0019
LEU 1700.0024
GLU 1710.0032
ASN 1720.0038
LEU 1730.0034
GLN 1740.0042
GLU 1750.0037
LEU 1760.0030
LEU 1770.0027
LEU 1780.0019
SER 1790.0021
ASN 1800.0017
ASN 1810.0011
LYS 1820.0007
ILE 1830.0010
GLN 1840.0018
ALA 1850.0025
LEU 1860.0030
LYS 1870.0036
SER 1880.0042
GLU 1890.0038
GLU 1900.0027
LEU 1910.0031
ASP 1920.0038
ILE 1930.0031
PHE 1940.0038
ALA 1950.0047
ASN 1960.0050
SER 1970.0047
SER 1980.0054
LEU 1990.0048
LYS 2000.0054
LYS 2010.0045
LEU 2020.0037
GLU 2030.0030
LEU 2040.0022
SER 2050.0020
SER 2060.0011
ASN 2070.0008
GLN 2080.0012
ILE 2090.0019
LYS 2100.0027
GLU 2110.0035
PHE 2120.0038
SER 2130.0046
PRO 2140.0054
GLY 2150.0056
CYS 2160.0047
PHE 2170.0048
HIS 2180.0057
ALA 2190.0053
ILE 2200.0052
GLY 2210.0063
ARG 2220.0064
LEU 2230.0057
PHE 2240.0060
GLY 2250.0051
LEU 2260.0040
PHE 2270.0032
LEU 2280.0023
ASN 2290.0018
ASN 2300.0011
VAL 2310.0011
GLN 2320.0014
LEU 2330.0020
GLY 2340.0023
PRO 2350.0029
SER 2360.0037
LEU 2370.0033
THR 2380.0029
GLU 2390.0038
LYS 2400.0043
LEU 2410.0039
CYS 2420.0044
LEU 2430.0053
GLU 2440.0053
LEU 2450.0051
ALA 2460.0062
ASN 2470.0071
THR 2480.0067
SER 2490.0068
ILE 2500.0057
ARG 2510.0054
ASN 2520.0046
LEU 2530.0037
SER 2540.0029
LEU 2550.0020
SER 2560.0017
ASN 2570.0010
SER 2580.0009
GLN 2590.0013
LEU 2600.0015
SER 2610.0025
THR 2620.0026
THR 2630.0022
SER 2640.0028
ASN 2650.0029
THR 2660.0040
THR 2670.0032
PHE 2680.0032
LEU 2690.0042
GLY 2700.0050
LEU 2710.0045
LYS 2720.0052
TRP 2730.0061
THR 2740.0056
ASN 2750.0058
LEU 2760.0041
THR 2770.0041
MET 2780.0037
LEU 2790.0026
ASP 2800.0023
LEU 2810.0017
SER 2820.0022
TYR 2830.0020
ASN 2840.0008
ASN 2850.0020
LEU 2860.0022
ASN 2870.0030
VAL 2880.0029
VAL 2890.0022
GLY 2900.0025
ASN 2910.0023
ASP 2920.0018
SER 2930.0017
PHE 2940.0016
ALA 2950.0018
TRP 2960.0027
LEU 2970.0026
PRO 2980.0029
GLN 2990.0036
LEU 3000.0031
GLU 3010.0033
TYR 3020.0033
PHE 3030.0023
PHE 3040.0023
LEU 3050.0018
GLU 3060.0026
TYR 3070.0029
ASN 3080.0023
ASN 3090.0032
ILE 3100.0030
GLN 3110.0042
HIS 3120.0040
LEU 3130.0034
PHE 3140.0032
SER 3150.0030
HIS 3160.0024
SER 3170.0022
LEU 3180.0021
HIS 3190.0019
GLY 3200.0019
LEU 3210.0022
PHE 3220.0027
ASN 3230.0031
VAL 3240.0030
ARG 3250.0037
TYR 3260.0035
LEU 3270.0030
ASN 3280.0030
LEU 3290.0030
LYS 3300.0033
ARG 3310.0040
SER 3320.0030
PHE 3330.0040
THR 3340.0048
LYS 3350.0058
GLN 3360.0075
SER 3370.0089
ILE 3380.0108
SER 3390.0121
LEU 3400.0109
ALA 3410.0084
SER 3420.0070
LEU 3430.0060
PRO 3440.0044
LYS 3450.0036
ILE 3460.0037
ASP 3470.0037
ASP 3480.0040
PHE 3490.0040
SER 3500.0036
PHE 3510.0037
GLN 3520.0039
TRP 3530.0035
LEU 3540.0037
LYS 3550.0042
CYS 3560.0045
LEU 3570.0042
GLU 3580.0045
HIS 3590.0041
LEU 3600.0038
ASN 3610.0035
MET 3620.0036
GLU 3630.0036
ASP 3640.0037
ASN 3650.0037
ASP 3660.0044
ILE 3670.0040
PRO 3680.0038
GLY 3690.0037
ILE 3700.0038
LYS 3710.0045
SER 3720.0050
ASN 3730.0049
MET 3740.0043
PHE 3750.0044
THR 3760.0050
GLY 3770.0054
LEU 3780.0051
ILE 3790.0058
ASN 3800.0056
LEU 3810.0051
LYS 3820.0049
TYR 3830.0042
LEU 3840.0035
SER 3850.0030
LEU 3860.0031
SER 3870.0032
ASN 3880.0031
SER 3890.0028
PHE 3900.0026
THR 3910.0036
SER 3920.0046
LEU 3930.0044
ARG 3940.0066
THR 3950.0070
LEU 3960.0052
THR 3970.0062
ASN 3980.0063
GLU 3990.0067
THR 4000.0051
PHE 4010.0041
VAL 4020.0057
SER 4030.0055
LEU 4040.0049
ALA 4050.0060
HIS 4060.0067
SER 4070.0059
PRO 4080.0060
LEU 4090.0046
HIS 4100.0045
ILE 4110.0037
LEU 4120.0024
ASN 4130.0030
LEU 4140.0027
THR 4150.0044
LYS 4160.0059
ASN 4170.0045
LYS 4180.0063
ILE 4190.0059
SER 4200.0078
LYS 4210.0076
ILE 4220.0059
GLU 4230.0065
SER 4240.0060
ASP 4250.0049
ALA 4260.0044
PHE 4270.0029
SER 4280.0042
TRP 4290.0047
LEU 4300.0037
GLY 4310.0041
HIS 4320.0048
LEU 4330.0033
GLU 4340.0044
VAL 4350.0043
LEU 4360.0035
ASP 4370.0050
LEU 4380.0052
GLY 4390.0073
LEU 4400.0086
ASN 4410.0083
GLU 4420.0094
ILE 4430.0086
GLY 4440.0100
GLN 4450.0093
GLU 4460.0087
LEU 4470.0068
THR 4480.0062
GLY 4490.0044
GLN 4500.0042
GLU 4510.0042
TRP 4520.0025
ARG 4530.0026
GLY 4540.0028
LEU 4550.0021
GLU 4560.0029
ASN 4570.0040
ILE 4580.0036
PHE 4590.0054
GLU 4600.0057
ILE 4610.0057
TYR 4620.0074
LEU 4630.0078
SER 4640.0097
TYR 4650.0112
ASN 4660.0103
LYS 4670.0117
TYR 4680.0111
LEU 4690.0093
GLN 4700.0091
LEU 4710.0074
THR 4720.0063
ARG 4730.0048
ASN 4740.0042
SER 4750.0051
PHE 4760.0041
ALA 4770.0026
LEU 4780.0020
VAL 4790.0030
PRO 4800.0036
SER 4810.0043
LEU 4820.0051
GLN 4830.0067
ARG 4840.0076
LEU 4850.0075
MET 4860.0089
LEU 4870.0093
ARG 4880.0110
ARG 4890.0120
VAL 4900.0110
ALA 4910.0119
LEU 4920.0100
LYS 4930.0098
ASN 4940.0084
VAL 4950.0078
ASP 4960.0065
SER 4970.0058
SER 4980.0048
PRO 4990.0041
SER 5000.0048
PRO 5010.0052
PHE 5020.0053
GLN 5030.0041
PRO 5040.0033
LEU 5050.0046
ARG 5060.0040
ASN 5070.0054
LEU 5080.0062
THR 5090.0077
ILE 5100.0087
LEU 5110.0083
ASP 5120.0094
LEU 5130.0093
SER 5140.0106
ASN 5150.0115
ASN 5160.0106
ASN 5170.0097
ILE 5180.0088
ALA 5190.0077
ASN 5200.0070
ILE 5210.0065
ASN 5220.0053
ASP 5230.0046
ASP 5240.0043
MET 5250.0053
LEU 5260.0050
GLU 5270.0041
GLY 5280.0041
LEU 5290.0051
GLU 5300.0055
LYS 5310.0063
LEU 5320.0066
GLU 5330.0079
ILE 5340.0085
LEU 5350.0079
ASP 5360.0086
LEU 5370.0083
GLN 5380.0091
HIS 5390.0094
ASN 5400.0087
ASN 5410.0074
LEU 5420.0065
ALA 5430.0058
ARG 5440.0052
LEU 5450.0050
TRP 5460.0045
LYS 5470.0040
HIS 5480.0033
ALA 5490.0036
ASN 5500.0042
PRO 5510.0044
GLY 5520.0042
GLY 5530.0036
PRO 5540.0039
ILE 5550.0045
TYR 5560.0043
PHE 5570.0048
LEU 5580.0053
LYS 5590.0047
GLY 5600.0048
LEU 5610.0048
SER 5620.0051
HIS 5630.0059
LEU 5640.0058
HIS 5650.0065
ILE 5660.0074
LEU 5670.0070
ASN 5680.0073
LEU 5690.0069
GLU 5700.0075
SER 5710.0075
ASN 5720.0069
GLY 5730.0061
PHE 5740.0053
ASP 5750.0043
GLU 5760.0037
ILE 5770.0040
PRO 5780.0036
VAL 5790.0037
GLU 5800.0040
VAL 5810.0039
PHE 5820.0043
LYS 5830.0041
ASP 5840.0043
LEU 5850.0047
PHE 5860.0043
GLU 5870.0050
LEU 5880.0048
LYS 5890.0055
ILE 5900.0055
ILE 5910.0060
ASP 5920.0060
LEU 5930.0053
GLY 5940.0055
LEU 5950.0055
ASN 5960.0049
ASN 5970.0041
LEU 5980.0037
ASN 5990.0029
THR 6000.0027
LEU 6010.0032
PRO 6020.0033
ALA 6030.0034
SER 6040.0040
VAL 6050.0041
PHE 6060.0040
ASN 6070.0041
ASN 6080.0043
GLN 6090.0043
VAL 6100.0044
SER 6110.0049
LEU 6120.0047
LYS 6130.0049
SER 6140.0047
LEU 6150.0043
ASN 6160.0045
LEU 6170.0040
GLN 6180.0038
LYS 6190.0036
ASN 6200.0035
LEU 6210.0027
ILE 6220.0024
THR 6230.0017
SER 6240.0020
VAL 6250.0027
GLU 6260.0027
LYS 6270.0033
LYS 6280.0037
VAL 6290.0037
PHE 6300.0035
GLY 6310.0035
PRO 6320.0040
ALA 6330.0038
PHE 6340.0034
ARG 6350.0037
ASN 6360.0037
LEU 6370.0033
THR 6380.0033
GLU 6390.0031
LEU 6400.0028
ASP 6410.0028
MET 6420.0025
ARG 6430.0022
PHE 6440.0022
ASN 6450.0021
PRO 6460.0015
PHE 6470.0009
ASP 6480.0006
CYS 6490.0010
THR 6500.0018
CYS 6510.0027
GLU 6520.0029
SER 6530.0022
ILE 6540.0018
ALA 6550.0025
TRP 6560.0026
PHE 6570.0020
VAL 6580.0013
ASN 6590.0018
TRP 6600.0018
ILE 6610.0024
ASN 6620.0015
GLU 6630.0019
THR 6640.0036
HIS 6650.0061
THR 6660.0019
ASN 6670.0018
ILE 6680.0011
PRO 6690.0011
GLU 6700.0008
LEU 6710.0006
SER 6720.0006
SER 6730.0012
HIS 6740.0012
TYR 6750.0006
LEU 6760.0009
CYS 6770.0006
ASN 6780.0011
THR 6790.0006
PRO 6800.0012
PRO 6810.0021
HIS 6820.0026
TYR 6830.0019
HIS 6840.0019
GLY 6850.0021
PHE 6860.0016
PRO 6870.0011
VAL 6880.0006
ARG 6890.0009
LEU 6900.0017
PHE 6910.0019
ASP 6920.0030
THR 6930.0033
SER 6940.0045
SER 6950.0047
CYS 6960.0046
GLU 10.0141
ALA 20.0128
ALA 30.0128
ALA 40.0111
LYS 50.0086
MET 60.0085
GLN 70.0084
ARG 80.0062
LEU 90.0053
VAL 100.0064
LEU 110.0058
LEU 120.0032
LEU 130.0034
ALA 140.0057
ILE 150.0049
SER 160.0058
LEU 170.0114
LEU 180.0131
LEU 190.0120
TYR 200.0184
GLN 210.0248
ASP 220.0249
LEU 230.0304
PRO 240.0409
VAL 250.0417
ARG 260.0309
SER 270.0241
GLU 280.0190
PHE 290.0127
GLU 300.0136
LEU 310.0115
ASP 320.0093
ARG 330.0058
ILE 340.0054
CYS 350.0069
GLY 360.0104
TYR 370.0122
GLY 380.0066
THR 390.0074
ALA 400.0045
ARG 410.0011
CYS 420.0013
ARG 430.0024
LYS 440.0032
LYS 450.0051
CYS 460.0068
ARG 470.0085
SER 480.0109
GLN 490.0102
GLU 500.0083
TYR 510.0089
ARG 520.0068
ILE 530.0079
GLY 540.0066
ARG 550.0050
CYS 560.0060
PRO 570.0088
ASN 580.0071
THR 590.0048
TYR 600.0021
ALA 610.0025
CYS 620.0035
CYS 630.0045
LEU 640.0063
ARG 650.0078
LYS 660.0128
TRP 670.0127
ASP 680.0074
GLU 690.0019
SER 700.0074
LEU 710.0056
LEU 720.0075
ASN 730.0154
ARG 740.0147
THR 750.0078
LYS 760.0318
PRO 770.0437
GLU 780.0822
ALA 790.0917
ALA 800.0630
ALA 810.0303
LYS 820.0258
LYS 830.0202
GLU 840.0181
MET 850.0127
ASN 860.0111
LEU 870.0101
SER 880.0085
VAL 890.0092
GLY 900.0082
LEU 910.0106
GLY 920.0115
GLY 930.0152
GLY 940.0128
SER 950.0132
ASN 960.0091
LEU 970.0115
SER 980.0108
VAL 990.0136
GLY 1000.0145
LEU 1010.0160
GLY 1020.0181
GLU 1030.0175
ILE 1040.0284
GLY 1050.0363
GLY 1060.0632
GLY 1070.0482
SER 1080.0372
LYS 1090.0194
LEU 1100.0112
LEU 1110.0128
ASP 1120.0132
ILE 1130.0118
ASN 1140.0134
LEU 1150.0135
GLY 1160.0152
ARG 1170.0191
GLY 1180.0161
GLY 1190.0139
GLY 1200.0090
SER 1210.0075
MET 1220.0053
VAL 1230.0063
ASP 1240.0047
LEU 1250.0061
THR 1260.0049
PHE 1270.0061
GLY 1280.0066
GLY 1290.0070
VAL 1300.0087
GLY 1310.0032
GLY 1320.0028
GLY 1330.0027
SER 1340.0032
THR 1350.0040
PHE 1360.0070
THR 1370.0092
PHE 1380.0089
PHE 1390.0112
PRO 1400.0111
LEU 1410.0123
VAL 1420.0132
ILE 1430.0135
GLY 1440.0152
GLY 1450.0150
GLY 1460.0155
SER 1470.0150
ASP 1480.0129
ALA 1490.0132
MET 1500.0115
TYR 1510.0088
LEU 1520.0083
GLY 1530.0094
PHE 1540.0093
ALA 1550.0104
ALA 1560.0042
GLY 1570.0040
GLY 1580.0039
GLY 1590.0037
SER 1600.0039
ALA 1610.0037
GLY 1620.0040
GLY 1630.0047
GLU 1640.0051
ASN 1650.0056
HIS 1660.0052
VAL 1670.0058
ALA 1680.0042
PHE 1690.0046
GLY 1700.0034
PRO 1710.0074
GLY 1720.0104
PRO 1730.0124
GLY 1740.0114
VAL 1750.0085
ASP 1760.0075
LEU 1770.0081
THR 1780.0078
PHE 1790.0084
GLY 1800.0084
GLY 1810.0092
VAL 1820.0106
GLN 1830.0097
PHE 1840.0107
ALA 1850.0105
MET 1860.0097
VAL 1870.0072
ASN 1880.0074
ASN 1890.0051
GLY 1900.0075
PRO 1910.0201
GLY 1920.0191
PRO 1930.0130
GLY 1940.0078
GLU 1950.0103
SER 1960.0154
PHE 1970.0047
THR 1980.0271
ALA 1990.0197
GLN 2000.0141
PRO 2010.0160
ALA 2020.0061
ASP 2030.0310
MET 2040.0442
GLN 2050.0509
ALA 2060.0383
GLY 2070.0651
ILE 2080.0134
LYS 2090.0806
GLY 2100.0789
PRO 2110.0244
GLY 2120.0149
PRO 2130.0066
GLY 2140.0062
GLY 2150.0137
SER 2160.0272
ILE 2170.0201
GLN 2180.0203
VAL 2190.0162
ILE 2200.0178
ASN 2210.0171
GLY 2220.0163
SER 2230.0141
THR 2240.0082
ILE 2250.0140
GLY 2260.0240
THR 2270.0237
GLY 2280.0196
SER 2290.0138
LYS 2300.0083
LYS 2310.0054
THR 2320.0063
ILE 2330.0056
LEU 2340.0088
ILE 2350.0090
TYR 2360.0137
SER 2370.0141
ILE 2380.0157
ILE 2390.0162
GLY 2400.0210
VAL 2410.0163
LYS 2420.0188
LYS 2430.0081
GLY 2440.0246
THR 2450.0306
LEU 2460.0176
ALA 2470.0191
TRP 2480.0160
ALA 2490.0167
ARG 2500.0119
THR 2510.0081
GLY 2520.0027
PHE 2530.0049
SER 2540.0078
PRO 2550.0130
ALA 2560.0149
LYS 2570.0164
LYS 2580.0175
LEU 2590.0186
ASN 2600.0213
ALA 2610.0206
GLY 2620.0153
VAL 2630.0143
VAL 2640.0115
ARG 2650.0087
VAL 2660.0091
PHE 2670.0080
PHE 2680.0095
LEU 2690.0075
ASN 2700.0092
GLN 2710.0112
LYS 2720.0097
LYS 2730.0080
ALA 2740.0095
LYS 2750.0117
ASP 2760.0108
VAL 2770.0084
LEU 2780.0086
ARG 2790.0092
LYS 2800.0086
THR 2810.0066
SER 2820.0069
ARG 2830.0051
PRO 2840.0108
MET 2850.0116
VAL 2860.0077
ASP 2870.0152
LEU 2880.0095
THR 2890.0165
PHE 2900.0061
GLY 2910.0092
GLY 2920.0244

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.