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***  TLR_3_simulation  ***

<R2> analysis for 2608260340483950756

---  normal mode 54  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0802
THR 260.0074
LYS 270.0072
CYS 280.0064
THR 290.0066
VAL 300.0072
SER 310.0074
HIS 320.0072
GLU 330.0057
VAL 340.0055
ALA 350.0049
ASP 360.0053
CYS 370.0050
SER 380.0042
HIS 390.0044
LEU 400.0054
LYS 410.0057
LEU 420.0042
THR 430.0043
GLN 440.0028
VAL 450.0014
PRO 460.0025
ASP 470.0017
ASP 480.0031
LEU 490.0036
PRO 500.0043
THR 510.0033
ASN 520.0051
ILE 530.0049
THR 540.0055
VAL 550.0052
LEU 560.0037
ASN 570.0039
LEU 580.0033
THR 590.0035
HIS 600.0041
ASN 610.0052
GLN 620.0057
LEU 630.0040
ARG 640.0057
ARG 650.0050
LEU 660.0037
PRO 670.0052
ALA 680.0059
ALA 690.0058
ASN 700.0033
PHE 710.0031
THR 720.0048
ARG 730.0037
TYR 740.0041
SER 750.0063
GLN 760.0065
LEU 770.0057
THR 780.0074
SER 790.0062
LEU 800.0037
ASP 810.0035
VAL 820.0023
GLY 830.0038
PHE 840.0055
ASN 850.0050
THR 860.0068
ILE 870.0052
SER 880.0070
LYS 890.0068
LEU 900.0052
GLU 910.0073
PRO 920.0084
GLU 930.0094
LEU 940.0068
CYS 950.0079
GLN 960.0101
LYS 970.0088
LEU 980.0078
PRO 990.0105
MET 1000.0104
LEU 1010.0085
LYS 1020.0092
VAL 1030.0073
LEU 1040.0044
ASN 1050.0039
LEU 1060.0023
GLN 1070.0051
HIS 1080.0071
ASN 1090.0062
GLU 1100.0075
LEU 1110.0056
SER 1120.0076
GLN 1130.0078
LEU 1140.0060
SER 1150.0079
ASP 1160.0089
LYS 1170.0099
THR 1180.0070
PHE 1190.0063
ALA 1200.0095
PHE 1210.0105
CYS 1220.0087
THR 1230.0111
ASN 1240.0113
LEU 1250.0087
THR 1260.0096
GLU 1270.0078
LEU 1280.0048
HIS 1290.0049
LEU 1300.0036
MET 1310.0067
SER 1320.0083
ASN 1330.0068
SER 1340.0087
ILE 1350.0068
GLN 1360.0082
LYS 1370.0071
ILE 1380.0050
LYS 1390.0068
ASN 1400.0074
ASN 1410.0062
PRO 1420.0052
PHE 1430.0045
VAL 1440.0070
LYS 1450.0089
GLN 1460.0076
LYS 1470.0097
ASN 1480.0106
LEU 1490.0082
ILE 1500.0095
THR 1510.0080
LEU 1520.0055
ASP 1530.0062
LEU 1540.0054
SER 1550.0081
HIS 1560.0096
ASN 1570.0084
GLY 1580.0090
LEU 1590.0070
SER 1600.0075
SER 1610.0057
THR 1620.0041
LYS 1630.0023
LEU 1640.0007
GLY 1650.0021
THR 1660.0045
GLN 1670.0048
VAL 1680.0046
GLN 1690.0049
LEU 1700.0054
GLU 1710.0071
ASN 1720.0085
LEU 1730.0069
GLN 1740.0088
GLU 1750.0084
LEU 1760.0066
LEU 1770.0076
LEU 1780.0072
SER 1790.0092
ASN 1800.0103
ASN 1810.0088
LYS 1820.0087
ILE 1830.0072
GLN 1840.0073
ALA 1850.0058
LEU 1860.0056
LYS 1870.0044
SER 1880.0034
GLU 1890.0023
GLU 1900.0028
LEU 1910.0027
ASP 1920.0014
ILE 1930.0015
PHE 1940.0032
ALA 1950.0033
ASN 1960.0047
SER 1970.0050
SER 1980.0066
LEU 1990.0067
LYS 2000.0086
LYS 2010.0083
LEU 2020.0076
GLU 2030.0084
LEU 2040.0082
SER 2050.0095
SER 2060.0093
ASN 2070.0086
GLN 2080.0083
ILE 2090.0073
LYS 2100.0069
GLU 2110.0061
PHE 2120.0057
SER 2130.0052
PRO 2140.0048
GLY 2150.0047
CYS 2160.0049
PHE 2170.0053
HIS 2180.0048
ALA 2190.0038
ILE 2200.0044
GLY 2210.0043
ARG 2220.0053
LEU 2230.0060
PHE 2240.0069
GLY 2250.0075
LEU 2260.0073
PHE 2270.0078
LEU 2280.0078
ASN 2290.0083
ASN 2300.0086
VAL 2310.0077
GLN 2320.0067
LEU 2330.0059
GLY 2340.0044
PRO 2350.0032
SER 2360.0042
LEU 2370.0049
THR 2380.0044
GLU 2390.0040
LYS 2400.0047
LEU 2410.0053
CYS 2420.0049
LEU 2430.0047
GLU 2440.0054
LEU 2450.0054
ALA 2460.0052
ASN 2470.0052
THR 2480.0056
SER 2490.0059
ILE 2500.0060
ARG 2510.0054
ASN 2520.0057
LEU 2530.0055
SER 2540.0058
LEU 2550.0057
SER 2560.0052
ASN 2570.0050
SER 2580.0054
GLN 2590.0047
LEU 2600.0034
SER 2610.0031
THR 2620.0025
THR 2630.0012
SER 2640.0016
ASN 2650.0012
THR 2660.0017
THR 2670.0021
PHE 2680.0023
LEU 2690.0023
GLY 2700.0035
LEU 2710.0036
LYS 2720.0034
TRP 2730.0043
THR 2740.0046
ASN 2750.0049
LEU 2760.0040
THR 2770.0044
MET 2780.0042
LEU 2790.0033
ASP 2800.0033
LEU 2810.0027
SER 2820.0025
TYR 2830.0021
ASN 2840.0023
ASN 2850.0021
LEU 2860.0016
ASN 2870.0034
VAL 2880.0037
VAL 2890.0027
GLY 2900.0033
ASN 2910.0040
ASP 2920.0034
SER 2930.0019
PHE 2940.0024
ALA 2950.0033
TRP 2960.0021
LEU 2970.0029
PRO 2980.0042
GLN 2990.0047
LEU 3000.0038
GLU 3010.0049
TYR 3020.0044
PHE 3030.0034
PHE 3040.0028
LEU 3050.0022
GLU 3060.0031
TYR 3070.0020
ASN 3080.0019
ASN 3090.0032
ILE 3100.0037
GLN 3110.0056
HIS 3120.0062
LEU 3130.0057
PHE 3140.0062
SER 3150.0071
HIS 3160.0060
SER 3170.0049
LEU 3180.0050
HIS 3190.0054
GLY 3200.0053
LEU 3210.0050
PHE 3220.0063
ASN 3230.0062
VAL 3240.0055
ARG 3250.0063
TYR 3260.0058
LEU 3270.0055
ASN 3280.0053
LEU 3290.0053
LYS 3300.0052
ARG 3310.0044
SER 3320.0039
PHE 3330.0049
THR 3340.0053
LYS 3350.0060
GLN 3360.0084
SER 3370.0099
ILE 3380.0135
SER 3390.0161
LEU 3400.0155
ALA 3410.0125
SER 3420.0096
LEU 3430.0089
PRO 3440.0064
LYS 3450.0072
ILE 3460.0071
ASP 3470.0075
ASP 3480.0081
PHE 3490.0079
SER 3500.0072
PHE 3510.0072
GLN 3520.0077
TRP 3530.0073
LEU 3540.0071
LYS 3550.0076
CYS 3560.0073
LEU 3570.0072
GLU 3580.0073
HIS 3590.0071
LEU 3600.0071
ASN 3610.0074
MET 3620.0074
GLU 3630.0074
ASP 3640.0073
ASN 3650.0072
ASP 3660.0080
ILE 3670.0076
PRO 3680.0078
GLY 3690.0078
ILE 3700.0075
LYS 3710.0070
SER 3720.0070
ASN 3730.0072
MET 3740.0071
PHE 3750.0071
THR 3760.0073
GLY 3770.0074
LEU 3780.0073
ILE 3790.0073
ASN 3800.0073
LEU 3810.0071
LYS 3820.0070
TYR 3830.0073
LEU 3840.0072
SER 3850.0076
LEU 3860.0078
SER 3870.0083
ASN 3880.0085
SER 3890.0081
PHE 3900.0080
THR 3910.0100
SER 3920.0088
LEU 3930.0069
ARG 3940.0070
THR 3950.0059
LEU 3960.0050
THR 3970.0052
ASN 3980.0044
GLU 3990.0039
THR 4000.0046
PHE 4010.0040
VAL 4020.0038
SER 4030.0051
LEU 4040.0053
ALA 4050.0048
HIS 4060.0044
SER 4070.0054
PRO 4080.0058
LEU 4090.0056
HIS 4100.0060
ILE 4110.0062
LEU 4120.0055
ASN 4130.0064
LEU 4140.0062
THR 4150.0073
LYS 4160.0088
ASN 4170.0082
LYS 4180.0088
ILE 4190.0071
SER 4200.0081
LYS 4210.0072
ILE 4220.0056
GLU 4230.0068
SER 4240.0071
ASP 4250.0061
ALA 4260.0031
PHE 4270.0025
SER 4280.0039
TRP 4290.0034
LEU 4300.0041
GLY 4310.0046
HIS 4320.0057
LEU 4330.0045
GLU 4340.0060
VAL 4350.0051
LEU 4360.0032
ASP 4370.0041
LEU 4380.0038
GLY 4390.0055
LEU 4400.0078
ASN 4410.0081
GLU 4420.0093
ILE 4430.0076
GLY 4440.0095
GLN 4450.0093
GLU 4460.0101
LEU 4470.0085
THR 4480.0107
GLY 4490.0094
GLN 4500.0102
GLU 4510.0068
TRP 4520.0062
ARG 4530.0082
GLY 4540.0083
LEU 4550.0070
GLU 4560.0097
ASN 4570.0093
ILE 4580.0070
PHE 4590.0077
GLU 4600.0053
ILE 4610.0026
TYR 4620.0024
LEU 4630.0026
SER 4640.0043
TYR 4650.0069
ASN 4660.0072
LYS 4670.0095
TYR 4680.0091
LEU 4690.0075
GLN 4700.0091
LEU 4710.0085
THR 4720.0108
ARG 4730.0117
ASN 4740.0118
SER 4750.0091
PHE 4760.0081
ALA 4770.0108
LEU 4780.0110
VAL 4790.0095
PRO 4800.0107
SER 4810.0105
LEU 4820.0079
GLN 4830.0076
ARG 4840.0053
LEU 4850.0031
MET 4860.0017
LEU 4870.0019
ARG 4880.0037
ARG 4890.0059
VAL 4900.0058
ALA 4910.0074
LEU 4920.0060
LYS 4930.0080
ASN 4940.0088
VAL 4950.0065
ASP 4960.0072
SER 4970.0092
SER 4980.0106
PRO 4990.0105
SER 5000.0081
PRO 5010.0079
PHE 5020.0068
GLN 5030.0087
PRO 5040.0101
LEU 5050.0086
ARG 5060.0093
ASN 5070.0096
LEU 5080.0069
THR 5090.0067
ILE 5100.0046
LEU 5110.0029
ASP 5120.0018
LEU 5130.0010
SER 5140.0027
ASN 5150.0043
ASN 5160.0042
ASN 5170.0048
ILE 5180.0040
ALA 5190.0042
ASN 5200.0037
ILE 5210.0031
ASN 5220.0034
ASP 5230.0024
ASP 5240.0044
MET 5250.0039
LEU 5260.0035
GLU 5270.0048
GLY 5280.0065
LEU 5290.0059
GLU 5300.0070
LYS 5310.0072
LEU 5320.0053
GLU 5330.0058
ILE 5340.0045
LEU 5350.0027
ASP 5360.0025
LEU 5370.0021
GLN 5380.0030
HIS 5390.0034
ASN 5400.0030
ASN 5410.0037
LEU 5420.0029
ALA 5430.0042
ARG 5440.0041
LEU 5450.0029
TRP 5460.0043
LYS 5470.0054
HIS 5480.0060
ALA 5490.0064
ASN 5500.0053
PRO 5510.0055
GLY 5520.0042
GLY 5530.0047
PRO 5540.0040
ILE 5550.0023
TYR 5560.0026
PHE 5570.0018
LEU 5580.0027
LYS 5590.0032
GLY 5600.0040
LEU 5610.0035
SER 5620.0046
HIS 5630.0051
LEU 5640.0043
HIS 5650.0049
ILE 5660.0043
LEU 5670.0037
ASN 5680.0034
LEU 5690.0035
GLU 5700.0037
SER 5710.0037
ASN 5720.0037
GLY 5730.0045
PHE 5740.0048
ASP 5750.0056
GLU 5760.0057
ILE 5770.0053
PRO 5780.0058
VAL 5790.0063
GLU 5800.0058
VAL 5810.0043
PHE 5820.0045
LYS 5830.0050
ASP 5840.0047
LEU 5850.0045
PHE 5860.0042
GLU 5870.0044
LEU 5880.0042
LYS 5890.0049
ILE 5900.0046
ILE 5910.0045
ASP 5920.0040
LEU 5930.0043
GLY 5940.0039
LEU 5950.0039
ASN 5960.0047
ASN 5970.0055
LEU 5980.0057
ASN 5990.0059
THR 6000.0067
LEU 6010.0063
PRO 6020.0074
ALA 6030.0080
SER 6040.0078
VAL 6050.0067
PHE 6060.0055
ASN 6070.0065
ASN 6080.0062
GLN 6090.0056
VAL 6100.0064
SER 6110.0058
LEU 6120.0054
LYS 6130.0052
SER 6140.0047
LEU 6150.0046
ASN 6160.0040
LEU 6170.0043
GLN 6180.0036
LYS 6190.0044
ASN 6200.0052
LEU 6210.0062
ILE 6220.0056
THR 6230.0060
SER 6240.0060
VAL 6250.0052
GLU 6260.0059
LYS 6270.0067
LYS 6280.0082
VAL 6290.0074
PHE 6300.0061
GLY 6310.0064
PRO 6320.0072
ALA 6330.0064
PHE 6340.0058
ARG 6350.0067
ASN 6360.0062
LEU 6370.0055
THR 6380.0054
GLU 6390.0046
LEU 6400.0041
ASP 6410.0030
MET 6420.0032
ARG 6430.0031
PHE 6440.0047
ASN 6450.0052
PRO 6460.0076
PHE 6470.0061
ASP 6480.0072
CYS 6490.0065
THR 6500.0065
CYS 6510.0042
GLU 6520.0054
SER 6530.0055
ILE 6540.0034
ALA 6550.0024
TRP 6560.0036
PHE 6570.0032
VAL 6580.0033
ASN 6590.0042
TRP 6600.0050
ILE 6610.0050
ASN 6620.0062
GLU 6630.0076
THR 6640.0084
HIS 6650.0105
THR 6660.0060
ASN 6670.0049
ILE 6680.0030
PRO 6690.0025
GLU 6700.0029
LEU 6710.0040
SER 6720.0062
SER 6730.0064
HIS 6740.0050
TYR 6750.0046
LEU 6760.0076
CYS 6770.0088
ASN 6780.0114
THR 6790.0122
PRO 6800.0131
PRO 6810.0168
HIS 6820.0162
TYR 6830.0130
HIS 6840.0143
GLY 6850.0133
PHE 6860.0115
PRO 6870.0086
VAL 6880.0062
ARG 6890.0064
LEU 6900.0092
PHE 6910.0080
ASP 6920.0085
THR 6930.0060
SER 6940.0078
SER 6950.0071
CYS 6960.0039
GLU 10.0242
ALA 20.0221
ALA 30.0190
ALA 40.0165
LYS 50.0145
MET 60.0126
GLN 70.0109
ARG 80.0082
LEU 90.0080
VAL 100.0073
LEU 110.0055
LEU 120.0037
LEU 130.0043
ALA 140.0040
ILE 150.0023
SER 160.0016
LEU 170.0026
LEU 180.0034
LEU 190.0035
TYR 200.0037
GLN 210.0072
ASP 220.0083
LEU 230.0104
PRO 240.0138
VAL 250.0128
ARG 260.0133
SER 270.0181
GLU 280.0119
PHE 290.0195
GLU 300.0227
LEU 310.0161
ASP 320.0096
ARG 330.0110
ILE 340.0122
CYS 350.0106
GLY 360.0139
TYR 370.0190
GLY 380.0153
THR 390.0106
ALA 400.0056
ARG 410.0037
CYS 420.0017
ARG 430.0015
LYS 440.0043
LYS 450.0053
CYS 460.0055
ARG 470.0049
SER 480.0061
GLN 490.0049
GLU 500.0051
TYR 510.0067
ARG 520.0061
ILE 530.0065
GLY 540.0054
ARG 550.0034
CYS 560.0029
PRO 570.0018
ASN 580.0007
THR 590.0026
TYR 600.0027
ALA 610.0038
CYS 620.0038
CYS 630.0039
LEU 640.0053
ARG 650.0050
LYS 660.0048
TRP 670.0060
ASP 680.0073
GLU 690.0124
SER 700.0157
LEU 710.0058
LEU 720.0104
ASN 730.0193
ARG 740.0148
THR 750.0049
LYS 760.0193
PRO 770.0207
GLU 780.0575
ALA 790.0545
ALA 800.0354
ALA 810.0211
LYS 820.0213
LYS 830.0211
GLU 840.0236
MET 850.0228
ASN 860.0175
LEU 870.0135
SER 880.0083
VAL 890.0053
GLY 900.0014
LEU 910.0083
GLY 920.0145
GLY 930.0218
GLY 940.0193
SER 950.0135
ASN 960.0030
LEU 970.0045
SER 980.0093
VAL 990.0152
GLY 1000.0205
LEU 1010.0232
GLY 1020.0264
GLU 1030.0270
ILE 1040.0291
GLY 1050.0299
GLY 1060.0276
GLY 1070.0268
SER 1080.0240
LYS 1090.0228
LEU 1100.0216
LEU 1110.0190
ASP 1120.0157
ILE 1130.0103
ASN 1140.0118
LEU 1150.0127
GLY 1160.0195
ARG 1170.0298
GLY 1180.0262
GLY 1190.0220
GLY 1200.0117
SER 1210.0081
MET 1220.0063
VAL 1230.0063
ASP 1240.0051
LEU 1250.0056
THR 1260.0053
PHE 1270.0062
GLY 1280.0064
GLY 1290.0063
VAL 1300.0076
GLY 1310.0040
GLY 1320.0051
GLY 1330.0055
SER 1340.0057
THR 1350.0060
PHE 1360.0078
THR 1370.0096
PHE 1380.0092
PHE 1390.0114
PRO 1400.0122
LEU 1410.0163
VAL 1420.0192
ILE 1430.0190
GLY 1440.0226
GLY 1450.0237
GLY 1460.0228
SER 1470.0195
ASP 1480.0168
ALA 1490.0145
MET 1500.0131
TYR 1510.0090
LEU 1520.0083
GLY 1530.0090
PHE 1540.0086
ALA 1550.0098
ALA 1560.0097
GLY 1570.0081
GLY 1580.0054
GLY 1590.0035
SER 1600.0024
ALA 1610.0035
GLY 1620.0035
GLY 1630.0035
GLU 1640.0034
ASN 1650.0030
HIS 1660.0043
VAL 1670.0048
ALA 1680.0048
PHE 1690.0058
GLY 1700.0058
PRO 1710.0112
GLY 1720.0117
PRO 1730.0102
GLY 1740.0060
VAL 1750.0024
ASP 1760.0031
LEU 1770.0031
THR 1780.0030
PHE 1790.0031
GLY 1800.0034
GLY 1810.0059
VAL 1820.0059
GLN 1830.0059
PHE 1840.0059
ALA 1850.0069
MET 1860.0131
VAL 1870.0301
ASN 1880.0351
ASN 1890.0534
GLY 1900.0563
PRO 1910.0434
GLY 1920.0437
PRO 1930.0375
GLY 1940.0281
GLU 1950.0100
SER 1960.0169
PHE 1970.0180
THR 1980.0140
ALA 1990.0149
GLN 2000.0172
PRO 2010.0131
ALA 2020.0203
ASP 2030.0207
MET 2040.0130
GLN 2050.0186
ALA 2060.0125
GLY 2070.0126
ILE 2080.0102
LYS 2090.0160
GLY 2100.0189
PRO 2110.0176
GLY 2120.0178
PRO 2130.0170
GLY 2140.0126
GLY 2150.0148
SER 2160.0424
ILE 2170.0482
GLN 2180.0163
VAL 2190.0368
ILE 2200.0254
ASN 2210.0205
GLY 2220.0181
SER 2230.0117
THR 2240.0126
ILE 2250.0141
GLY 2260.0205
THR 2270.0181
GLY 2280.0140
SER 2290.0088
LYS 2300.0095
LYS 2310.0076
THR 2320.0043
ILE 2330.0062
LEU 2340.0062
ILE 2350.0093
TYR 2360.0031
SER 2370.0084
ILE 2380.0135
ILE 2390.0121
GLY 2400.0207
VAL 2410.0277
LYS 2420.0280
LYS 2430.0321
GLY 2440.0320
THR 2450.0277
LEU 2460.0207
ALA 2470.0134
TRP 2480.0100
ALA 2490.0057
ARG 2500.0109
THR 2510.0158
GLY 2520.0127
PHE 2530.0053
SER 2540.0033
PRO 2550.0076
ALA 2560.0109
LYS 2570.0160
LYS 2580.0227
LEU 2590.0243
ASN 2600.0319
ALA 2610.0309
GLY 2620.0204
VAL 2630.0176
VAL 2640.0107
ARG 2650.0155
VAL 2660.0182
PHE 2670.0173
PHE 2680.0210
LEU 2690.0178
ASN 2700.0218
GLN 2710.0223
LYS 2720.0197
LYS 2730.0148
ALA 2740.0116
LYS 2750.0118
ASP 2760.0085
VAL 2770.0057
LEU 2780.0105
ARG 2790.0146
LYS 2800.0132
THR 2810.0044
SER 2820.0041
ARG 2830.0032
PRO 2840.0049
MET 2850.0061
VAL 2860.0278
ASP 2870.0359
LEU 2880.0143
THR 2890.0448
PHE 2900.0254
GLY 2910.0234
GLY 2920.0802

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Last modification: april 24th, 2026.