CNRS Nantes University US2B US2B
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***  TLR_3_simulation  ***

<R2> analysis for 2608260340483950756

---  normal mode 55  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0826
THR 260.0038
LYS 270.0035
CYS 280.0037
THR 290.0050
VAL 300.0049
SER 310.0051
HIS 320.0052
GLU 330.0044
VAL 340.0044
ALA 350.0040
ASP 360.0043
CYS 370.0030
SER 380.0033
HIS 390.0026
LEU 400.0019
LYS 410.0033
LEU 420.0033
THR 430.0036
GLN 440.0039
VAL 450.0037
PRO 460.0043
ASP 470.0050
ASP 480.0051
LEU 490.0048
PRO 500.0053
THR 510.0052
ASN 520.0050
ILE 530.0043
THR 540.0041
VAL 550.0035
LEU 560.0031
ASN 570.0026
LEU 580.0021
THR 590.0023
HIS 600.0026
ASN 610.0025
GLN 620.0029
LEU 630.0022
ARG 640.0022
ARG 650.0028
LEU 660.0030
PRO 670.0042
ALA 680.0051
ALA 690.0059
ASN 700.0052
PHE 710.0048
THR 720.0056
ARG 730.0056
TYR 740.0050
SER 750.0054
GLN 760.0047
LEU 770.0038
THR 780.0034
SER 790.0024
LEU 800.0022
ASP 810.0011
VAL 820.0008
GLY 830.0007
PHE 840.0018
ASN 850.0016
THR 860.0010
ILE 870.0011
SER 880.0025
LYS 890.0037
LEU 900.0037
GLU 910.0046
PRO 920.0057
GLU 930.0060
LEU 940.0047
CYS 950.0051
GLN 960.0063
LYS 970.0058
LEU 980.0049
PRO 990.0054
MET 1000.0045
LEU 1010.0035
LYS 1020.0034
VAL 1030.0029
LEU 1040.0029
ASN 1050.0029
LEU 1060.0032
GLN 1070.0046
HIS 1080.0052
ASN 1090.0038
GLU 1100.0043
LEU 1110.0062
SER 1120.0081
GLN 1130.0084
LEU 1140.0081
SER 1150.0085
ASP 1160.0091
LYS 1170.0079
THR 1180.0063
PHE 1190.0061
ALA 1200.0073
PHE 1210.0064
CYS 1220.0052
THR 1230.0058
ASN 1240.0044
LEU 1250.0042
THR 1260.0048
GLU 1270.0052
LEU 1280.0057
HIS 1290.0064
LEU 1300.0071
MET 1310.0086
SER 1320.0095
ASN 1330.0084
SER 1340.0102
ILE 1350.0103
GLN 1360.0130
LYS 1370.0131
ILE 1380.0120
LYS 1390.0126
ASN 1400.0125
ASN 1410.0105
PRO 1420.0089
PHE 1430.0082
VAL 1440.0087
LYS 1450.0073
GLN 1460.0063
LYS 1470.0062
ASN 1480.0049
LEU 1490.0058
ILE 1500.0064
THR 1510.0075
LEU 1520.0083
ASP 1530.0094
LEU 1540.0105
SER 1550.0119
HIS 1560.0132
ASN 1570.0132
GLY 1580.0144
LEU 1590.0140
SER 1600.0154
SER 1610.0148
THR 1620.0133
LYS 1630.0128
LEU 1640.0112
GLY 1650.0112
THR 1660.0123
GLN 1670.0109
VAL 1680.0096
GLN 1690.0083
LEU 1700.0073
GLU 1710.0072
ASN 1720.0062
LEU 1730.0074
GLN 1740.0079
GLU 1750.0090
LEU 1760.0098
LEU 1770.0112
LEU 1780.0124
SER 1790.0136
ASN 1800.0150
ASN 1810.0152
LYS 1820.0160
ILE 1830.0148
GLN 1840.0154
ALA 1850.0143
LEU 1860.0134
LYS 1870.0131
SER 1880.0119
GLU 1890.0123
GLU 1900.0122
LEU 1910.0114
ASP 1920.0108
ILE 1930.0100
PHE 1940.0091
ALA 1950.0087
ASN 1960.0072
SER 1970.0072
SER 1980.0071
LEU 1990.0083
LYS 2000.0085
LYS 2010.0095
LEU 2020.0101
GLU 2030.0113
LEU 2040.0121
SER 2050.0130
SER 2060.0142
ASN 2070.0141
GLN 2080.0148
ILE 2090.0137
LYS 2100.0144
GLU 2110.0132
PHE 2120.0117
SER 2130.0117
PRO 2140.0109
GLY 2150.0095
CYS 2160.0103
PHE 2170.0092
HIS 2180.0082
ALA 2190.0088
ILE 2200.0082
GLY 2210.0065
ARG 2220.0066
LEU 2230.0076
PHE 2240.0078
GLY 2250.0090
LEU 2260.0090
PHE 2270.0101
LEU 2280.0107
ASN 2290.0115
ASN 2300.0125
VAL 2310.0114
GLN 2320.0106
LEU 2330.0096
GLY 2340.0084
PRO 2350.0071
SER 2360.0089
LEU 2370.0091
THR 2380.0082
GLU 2390.0073
LYS 2400.0077
LEU 2410.0090
CYS 2420.0077
LEU 2430.0072
GLU 2440.0076
LEU 2450.0068
ALA 2460.0058
ASN 2470.0049
THR 2480.0056
SER 2490.0054
ILE 2500.0065
ARG 2510.0066
ASN 2520.0073
LEU 2530.0075
SER 2540.0082
LEU 2550.0083
SER 2560.0085
ASN 2570.0088
SER 2580.0086
GLN 2590.0082
LEU 2600.0074
SER 2610.0059
THR 2620.0054
THR 2630.0050
SER 2640.0046
ASN 2650.0042
THR 2660.0052
THR 2670.0056
PHE 2680.0054
LEU 2690.0049
GLY 2700.0050
LEU 2710.0054
LYS 2720.0046
TRP 2730.0042
THR 2740.0047
ASN 2750.0048
LEU 2760.0051
THR 2770.0055
MET 2780.0061
LEU 2790.0062
ASP 2800.0068
LEU 2810.0071
SER 2820.0070
TYR 2830.0070
ASN 2840.0069
ASN 2850.0065
LEU 2860.0063
ASN 2870.0055
VAL 2880.0050
VAL 2890.0046
GLY 2900.0044
ASN 2910.0034
ASP 2920.0035
SER 2930.0042
PHE 2940.0044
ALA 2950.0038
TRP 2960.0042
LEU 2970.0044
PRO 2980.0042
GLN 2990.0043
LEU 3000.0047
GLU 3010.0046
TYR 3020.0049
PHE 3030.0049
PHE 3040.0052
LEU 3050.0052
GLU 3060.0054
TYR 3070.0052
ASN 3080.0053
ASN 3090.0049
ILE 3100.0046
GLN 3110.0044
HIS 3120.0037
LEU 3130.0031
PHE 3140.0028
SER 3150.0023
HIS 3160.0029
SER 3170.0032
LEU 3180.0032
HIS 3190.0031
GLY 3200.0033
LEU 3210.0036
PHE 3220.0035
ASN 3230.0037
VAL 3240.0037
ARG 3250.0037
TYR 3260.0034
LEU 3270.0034
ASN 3280.0035
LEU 3290.0035
LYS 3300.0036
ARG 3310.0034
SER 3320.0040
PHE 3330.0037
THR 3340.0046
LYS 3350.0044
GLN 3360.0070
SER 3370.0106
ILE 3380.0128
SER 3390.0167
LEU 3400.0167
ALA 3410.0114
SER 3420.0093
LEU 3430.0065
PRO 3440.0041
LYS 3450.0033
ILE 3460.0028
ASP 3470.0027
ASP 3480.0024
PHE 3490.0022
SER 3500.0025
PHE 3510.0025
GLN 3520.0023
TRP 3530.0024
LEU 3540.0025
LYS 3550.0024
CYS 3560.0028
LEU 3570.0027
GLU 3580.0027
HIS 3590.0028
LEU 3600.0029
ASN 3610.0027
MET 3620.0029
GLU 3630.0029
ASP 3640.0033
ASN 3650.0035
ASP 3660.0042
ILE 3670.0044
PRO 3680.0043
GLY 3690.0044
ILE 3700.0046
LYS 3710.0035
SER 3720.0034
ASN 3730.0032
MET 3740.0033
PHE 3750.0032
THR 3760.0028
GLY 3770.0026
LEU 3780.0028
ILE 3790.0026
ASN 3800.0027
LEU 3810.0036
LYS 3820.0040
TYR 3830.0041
LEU 3840.0039
SER 3850.0041
LEU 3860.0041
SER 3870.0042
ASN 3880.0045
SER 3890.0044
PHE 3900.0046
THR 3910.0056
SER 3920.0056
LEU 3930.0059
ARG 3940.0057
THR 3950.0059
LEU 3960.0063
THR 3970.0063
ASN 3980.0063
GLU 3990.0063
THR 4000.0063
PHE 4010.0055
VAL 4020.0051
SER 4030.0049
LEU 4040.0052
ALA 4050.0051
HIS 4060.0042
SER 4070.0043
PRO 4080.0051
LEU 4090.0054
HIS 4100.0063
ILE 4110.0064
LEU 4120.0061
ASN 4130.0061
LEU 4140.0059
THR 4150.0060
LYS 4160.0061
ASN 4170.0061
LYS 4180.0060
ILE 4190.0061
SER 4200.0060
LYS 4210.0065
ILE 4220.0070
GLU 4230.0071
SER 4240.0076
ASP 4250.0080
ALA 4260.0072
PHE 4270.0072
SER 4280.0071
TRP 4290.0068
LEU 4300.0070
GLY 4310.0077
HIS 4320.0078
LEU 4330.0077
GLU 4340.0082
VAL 4350.0081
LEU 4360.0077
ASP 4370.0074
LEU 4380.0072
GLY 4390.0070
LEU 4400.0067
ASN 4410.0068
GLU 4420.0065
ILE 4430.0068
GLY 4440.0066
GLN 4450.0071
GLU 4460.0082
LEU 4470.0084
THR 4480.0088
GLY 4490.0089
GLN 4500.0093
GLU 4510.0087
TRP 4520.0088
ARG 4530.0091
GLY 4540.0093
LEU 4550.0091
GLU 4560.0100
ASN 4570.0100
ILE 4580.0095
PHE 4590.0097
GLU 4600.0091
ILE 4610.0087
TYR 4620.0080
LEU 4630.0075
SER 4640.0069
TYR 4650.0063
ASN 4660.0066
LYS 4670.0061
TYR 4680.0064
LEU 4690.0070
GLN 4700.0074
LEU 4710.0079
THR 4720.0092
ARG 4730.0095
ASN 4740.0105
SER 4750.0097
PHE 4760.0095
ALA 4770.0101
LEU 4780.0106
VAL 4790.0104
PRO 4800.0106
SER 4810.0109
LEU 4820.0100
GLN 4830.0097
ARG 4840.0089
LEU 4850.0083
MET 4860.0074
LEU 4870.0067
ARG 4880.0057
ARG 4890.0051
VAL 4900.0059
ALA 4910.0051
LEU 4920.0059
LYS 4930.0065
ASN 4940.0074
VAL 4950.0071
ASP 4960.0076
SER 4970.0091
SER 4980.0101
PRO 4990.0102
SER 5000.0089
PRO 5010.0091
PHE 5020.0083
GLN 5030.0091
PRO 5040.0104
LEU 5050.0096
ARG 5060.0096
ASN 5070.0098
LEU 5080.0088
THR 5090.0080
ILE 5100.0074
LEU 5110.0067
ASP 5120.0058
LEU 5130.0050
SER 5140.0038
ASN 5150.0032
ASN 5160.0036
ASN 5170.0031
ILE 5180.0043
ALA 5190.0052
ASN 5200.0064
ILE 5210.0060
ASN 5220.0072
ASP 5230.0069
ASP 5240.0077
MET 5250.0070
LEU 5260.0064
GLU 5270.0073
GLY 5280.0079
LEU 5290.0073
GLU 5300.0068
LYS 5310.0076
LEU 5320.0064
GLU 5330.0059
ILE 5340.0052
LEU 5350.0043
ASP 5360.0037
LEU 5370.0028
GLN 5380.0023
HIS 5390.0022
ASN 5400.0027
ASN 5410.0036
LEU 5420.0040
ALA 5430.0049
ARG 5440.0064
LEU 5450.0061
TRP 5460.0055
LYS 5470.0071
HIS 5480.0084
ALA 5490.0097
ASN 5500.0089
PRO 5510.0108
GLY 5520.0110
GLY 5530.0095
PRO 5540.0073
ILE 5550.0065
TYR 5560.0052
PHE 5570.0050
LEU 5580.0040
LYS 5590.0048
GLY 5600.0053
LEU 5610.0043
SER 5620.0036
HIS 5630.0038
LEU 5640.0034
HIS 5650.0031
ILE 5660.0035
LEU 5670.0025
ASN 5680.0024
LEU 5690.0025
GLU 5700.0031
SER 5710.0036
ASN 5720.0033
GLY 5730.0045
PHE 5740.0045
ASP 5750.0057
GLU 5760.0052
ILE 5770.0042
PRO 5780.0046
VAL 5790.0042
GLU 5800.0039
VAL 5810.0034
PHE 5820.0028
LYS 5830.0032
ASP 5840.0032
LEU 5850.0026
PHE 5860.0024
GLU 5870.0016
LEU 5880.0020
LYS 5890.0019
ILE 5900.0023
ILE 5910.0029
ASP 5920.0033
LEU 5930.0035
GLY 5940.0047
LEU 5950.0056
ASN 5960.0053
ASN 5970.0054
LEU 5980.0047
ASN 5990.0049
THR 6000.0050
LEU 6010.0031
PRO 6020.0029
ALA 6030.0030
SER 6040.0032
VAL 6050.0030
PHE 6060.0025
ASN 6070.0023
ASN 6080.0022
GLN 6090.0026
VAL 6100.0028
SER 6110.0029
LEU 6120.0032
LYS 6130.0042
SER 6140.0045
LEU 6150.0041
ASN 6160.0048
LEU 6170.0041
GLN 6180.0059
LYS 6190.0070
ASN 6200.0059
LEU 6210.0064
ILE 6220.0043
THR 6230.0048
SER 6240.0049
VAL 6250.0046
GLU 6260.0049
LYS 6270.0067
LYS 6280.0065
VAL 6290.0042
PHE 6300.0049
GLY 6310.0058
PRO 6320.0054
ALA 6330.0051
PHE 6340.0064
ARG 6350.0072
ASN 6360.0072
LEU 6370.0068
THR 6380.0078
GLU 6390.0072
LEU 6400.0062
ASP 6410.0069
MET 6420.0049
ARG 6430.0069
PHE 6440.0076
ASN 6450.0056
PRO 6460.0068
PHE 6470.0045
ASP 6480.0066
CYS 6490.0065
THR 6500.0099
CYS 6510.0124
GLU 6520.0130
SER 6530.0089
ILE 6540.0073
ALA 6550.0111
TRP 6560.0103
PHE 6570.0083
VAL 6580.0090
ASN 6590.0117
TRP 6600.0115
ILE 6610.0111
ASN 6620.0112
GLU 6630.0127
THR 6640.0132
HIS 6650.0139
THR 6660.0113
ASN 6670.0114
ILE 6680.0093
PRO 6690.0111
GLU 6700.0115
LEU 6710.0103
SER 6720.0107
SER 6730.0114
HIS 6740.0095
TYR 6750.0065
LEU 6760.0065
CYS 6770.0050
ASN 6780.0083
THR 6790.0099
PRO 6800.0107
PRO 6810.0123
HIS 6820.0094
TYR 6830.0063
HIS 6840.0088
GLY 6850.0089
PHE 6860.0056
PRO 6870.0062
VAL 6880.0051
ARG 6890.0082
LEU 6900.0076
PHE 6910.0069
ASP 6920.0114
THR 6930.0152
SER 6940.0195
SER 6950.0189
CYS 6960.0205
GLU 10.0325
ALA 20.0299
ALA 30.0241
ALA 40.0205
LYS 50.0202
MET 60.0164
GLN 70.0125
ARG 80.0102
LEU 90.0123
VAL 100.0097
LEU 110.0063
LEU 120.0072
LEU 130.0079
ALA 140.0054
ILE 150.0051
SER 160.0063
LEU 170.0044
LEU 180.0041
LEU 190.0065
TYR 200.0071
GLN 210.0066
ASP 220.0075
LEU 230.0101
PRO 240.0118
VAL 250.0116
ARG 260.0122
SER 270.0061
GLU 280.0065
PHE 290.0023
GLU 300.0024
LEU 310.0087
ASP 320.0081
ARG 330.0090
ILE 340.0130
CYS 350.0156
GLY 360.0188
TYR 370.0246
GLY 380.0227
THR 390.0220
ALA 400.0152
ARG 410.0122
CYS 420.0108
ARG 430.0097
LYS 440.0084
LYS 450.0082
CYS 460.0104
ARG 470.0116
SER 480.0109
GLN 490.0100
GLU 500.0084
TYR 510.0074
ARG 520.0071
ILE 530.0074
GLY 540.0077
ARG 550.0083
CYS 560.0097
PRO 570.0097
ASN 580.0080
THR 590.0073
TYR 600.0074
ALA 610.0094
CYS 620.0099
CYS 630.0096
LEU 640.0092
ARG 650.0099
LYS 660.0073
TRP 670.0050
ASP 680.0118
GLU 690.0207
SER 700.0220
LEU 710.0170
LEU 720.0261
ASN 730.0308
ARG 740.0256
THR 750.0305
LYS 760.0402
PRO 770.0459
GLU 780.0548
ALA 790.0635
ALA 800.0584
ALA 810.0236
LYS 820.0175
LYS 830.0110
GLU 840.0085
MET 850.0114
ASN 860.0119
LEU 870.0125
SER 880.0089
VAL 890.0090
GLY 900.0070
LEU 910.0038
GLY 920.0049
GLY 930.0056
GLY 940.0042
SER 950.0029
ASN 960.0046
LEU 970.0074
SER 980.0088
VAL 990.0126
GLY 1000.0140
LEU 1010.0165
GLY 1020.0114
GLU 1030.0134
ILE 1040.0220
GLY 1050.0318
GLY 1060.0275
GLY 1070.0185
SER 1080.0121
LYS 1090.0082
LEU 1100.0133
LEU 1110.0140
ASP 1120.0131
ILE 1130.0111
ASN 1140.0106
LEU 1150.0088
GLY 1160.0086
ARG 1170.0116
GLY 1180.0075
GLY 1190.0026
GLY 1200.0056
SER 1210.0037
MET 1220.0071
VAL 1230.0094
ASP 1240.0137
LEU 1250.0167
THR 1260.0203
PHE 1270.0223
GLY 1280.0228
GLY 1290.0254
VAL 1300.0267
GLY 1310.0225
GLY 1320.0206
GLY 1330.0180
SER 1340.0200
THR 1350.0188
PHE 1360.0228
THR 1370.0194
PHE 1380.0159
PHE 1390.0131
PRO 1400.0095
LEU 1410.0104
VAL 1420.0109
ILE 1430.0137
GLY 1440.0199
GLY 1450.0230
GLY 1460.0167
SER 1470.0128
ASP 1480.0091
ALA 1490.0097
MET 1500.0093
TYR 1510.0099
LEU 1520.0125
GLY 1530.0157
PHE 1540.0194
ALA 1550.0219
ALA 1560.0182
GLY 1570.0144
GLY 1580.0133
GLY 1590.0111
SER 1600.0125
ALA 1610.0183
GLY 1620.0204
GLY 1630.0222
GLU 1640.0240
ASN 1650.0235
HIS 1660.0192
VAL 1670.0144
ALA 1680.0116
PHE 1690.0067
GLY 1700.0080
PRO 1710.0204
GLY 1720.0255
PRO 1730.0241
GLY 1740.0142
VAL 1750.0057
ASP 1760.0138
LEU 1770.0171
THR 1780.0228
PHE 1790.0280
GLY 1800.0339
GLY 1810.0380
VAL 1820.0363
GLN 1830.0291
PHE 1840.0241
ALA 1850.0199
MET 1860.0066
VAL 1870.0153
ASN 1880.0280
ASN 1890.0367
GLY 1900.0519
PRO 1910.0338
GLY 1920.0342
PRO 1930.0292
GLY 1940.0251
GLU 1950.0109
SER 1960.0127
PHE 1970.0142
THR 1980.0110
ALA 1990.0124
GLN 2000.0135
PRO 2010.0065
ALA 2020.0138
ASP 2030.0134
MET 2040.0083
GLN 2050.0126
ALA 2060.0069
GLY 2070.0072
ILE 2080.0047
LYS 2090.0072
GLY 2100.0093
PRO 2110.0162
GLY 2120.0128
PRO 2130.0107
GLY 2140.0119
GLY 2150.0145
SER 2160.0274
ILE 2170.0122
GLN 2180.0154
VAL 2190.0073
ILE 2200.0189
ASN 2210.0087
GLY 2220.0107
SER 2230.0098
THR 2240.0088
ILE 2250.0122
GLY 2260.0133
THR 2270.0113
GLY 2280.0083
SER 2290.0052
LYS 2300.0018
LYS 2310.0044
THR 2320.0070
ILE 2330.0084
LEU 2340.0116
ILE 2350.0129
TYR 2360.0135
SER 2370.0133
ILE 2380.0124
ILE 2390.0088
GLY 2400.0094
VAL 2410.0120
LYS 2420.0103
LYS 2430.0100
GLY 2440.0068
THR 2450.0067
LEU 2460.0080
ALA 2470.0060
TRP 2480.0071
ALA 2490.0052
ARG 2500.0064
THR 2510.0108
GLY 2520.0088
PHE 2530.0098
SER 2540.0091
PRO 2550.0081
ALA 2560.0091
LYS 2570.0082
LYS 2580.0055
LEU 2590.0071
ASN 2600.0053
ALA 2610.0099
GLY 2620.0084
VAL 2630.0103
VAL 2640.0097
ARG 2650.0092
VAL 2660.0109
PHE 2670.0086
PHE 2680.0104
LEU 2690.0135
ASN 2700.0197
GLN 2710.0169
LYS 2720.0114
LYS 2730.0106
ALA 2740.0161
LYS 2750.0193
ASP 2760.0115
VAL 2770.0125
LEU 2780.0235
ARG 2790.0183
LYS 2800.0086
THR 2810.0245
SER 2820.0152
ARG 2830.0146
PRO 2840.0088
MET 2850.0166
VAL 2860.0042
ASP 2870.0242
LEU 2880.0237
THR 2890.0467
PHE 2900.0370
GLY 2910.0428
GLY 2920.0826

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elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.