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***  TLR_3_simulation  ***

<R2> analysis for 2608260340483950756

---  normal mode 60  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0765
THR 260.0024
LYS 270.0019
CYS 280.0012
THR 290.0009
VAL 300.0012
SER 310.0017
HIS 320.0027
GLU 330.0025
VAL 340.0018
ALA 350.0008
ASP 360.0012
CYS 370.0012
SER 380.0020
HIS 390.0026
LEU 400.0023
LYS 410.0029
LEU 420.0026
THR 430.0034
GLN 440.0030
VAL 450.0021
PRO 460.0022
ASP 470.0027
ASP 480.0028
LEU 490.0020
PRO 500.0025
THR 510.0027
ASN 520.0029
ILE 530.0020
THR 540.0024
VAL 550.0023
LEU 560.0015
ASN 570.0020
LEU 580.0020
THR 590.0028
HIS 600.0033
ASN 610.0032
GLN 620.0039
LEU 630.0034
ARG 640.0043
ARG 650.0036
LEU 660.0029
PRO 670.0032
ALA 680.0027
ALA 690.0032
ASN 700.0025
PHE 710.0018
THR 720.0025
ARG 730.0026
TYR 740.0016
SER 750.0018
GLN 760.0023
LEU 770.0018
THR 780.0028
SER 790.0029
LEU 800.0025
ASP 810.0030
VAL 820.0030
GLY 830.0040
PHE 840.0048
ASN 850.0044
THR 860.0049
ILE 870.0043
SER 880.0051
LYS 890.0045
LEU 900.0034
GLU 910.0033
PRO 920.0028
GLU 930.0025
LEU 940.0018
CYS 950.0013
GLN 960.0016
LYS 970.0017
LEU 980.0010
PRO 990.0014
MET 1000.0021
LEU 1010.0024
LYS 1020.0032
VAL 1030.0038
LEU 1040.0035
ASN 1050.0044
LEU 1060.0043
GLN 1070.0056
HIS 1080.0065
ASN 1090.0059
GLU 1100.0063
LEU 1110.0056
SER 1120.0061
GLN 1130.0055
LEU 1140.0045
SER 1150.0040
ASP 1160.0035
LYS 1170.0032
THR 1180.0031
PHE 1190.0024
ALA 1200.0020
PHE 1210.0016
CYS 1220.0016
THR 1230.0016
ASN 1240.0024
LEU 1250.0029
THR 1260.0039
GLU 1270.0044
LEU 1280.0042
HIS 1290.0052
LEU 1300.0054
MET 1310.0064
SER 1320.0073
ASN 1330.0067
SER 1340.0073
ILE 1350.0064
GLN 1360.0065
LYS 1370.0058
ILE 1380.0048
LYS 1390.0048
ASN 1400.0043
ASN 1410.0032
PRO 1420.0030
PHE 1430.0024
VAL 1440.0018
LYS 1450.0016
GLN 1460.0019
LYS 1470.0021
ASN 1480.0030
LEU 1490.0031
ILE 1500.0040
THR 1510.0045
LEU 1520.0043
ASP 1530.0053
LEU 1540.0055
SER 1550.0066
HIS 1560.0076
ASN 1570.0073
GLY 1580.0075
LEU 1590.0062
SER 1600.0063
SER 1610.0053
THR 1620.0041
LYS 1630.0038
LEU 1640.0033
GLY 1650.0030
THR 1660.0034
GLN 1670.0027
VAL 1680.0020
GLN 1690.0016
LEU 1700.0019
GLU 1710.0021
ASN 1720.0030
LEU 1730.0029
GLN 1740.0037
GLU 1750.0042
LEU 1760.0037
LEU 1770.0048
LEU 1780.0050
SER 1790.0060
ASN 1800.0071
ASN 1810.0068
LYS 1820.0069
ILE 1830.0055
GLN 1840.0056
ALA 1850.0046
LEU 1860.0038
LYS 1870.0039
SER 1880.0033
GLU 1890.0036
GLU 1900.0033
LEU 1910.0024
ASP 1920.0023
ILE 1930.0018
PHE 1940.0015
ALA 1950.0020
ASN 1960.0023
SER 1970.0020
SER 1980.0024
LEU 1990.0024
LYS 2000.0032
LYS 2010.0034
LEU 2020.0030
GLU 2030.0039
LEU 2040.0040
SER 2050.0049
SER 2060.0055
ASN 2070.0052
GLN 2080.0054
ILE 2090.0046
LYS 2100.0052
GLU 2110.0045
PHE 2120.0036
SER 2130.0040
PRO 2140.0040
GLY 2150.0033
CYS 2160.0026
PHE 2170.0017
HIS 2180.0022
ALA 2190.0019
ILE 2200.0014
GLY 2210.0019
ARG 2220.0018
LEU 2230.0012
PHE 2240.0017
GLY 2250.0020
LEU 2260.0019
PHE 2270.0026
LEU 2280.0029
ASN 2290.0036
ASN 2300.0043
VAL 2310.0036
GLN 2320.0034
LEU 2330.0030
GLY 2340.0026
PRO 2350.0024
SER 2360.0031
LEU 2370.0029
THR 2380.0022
GLU 2390.0024
LYS 2400.0027
LEU 2410.0022
CYS 2420.0018
LEU 2430.0024
GLU 2440.0022
LEU 2450.0014
ALA 2460.0018
ASN 2470.0019
THR 2480.0013
SER 2490.0012
ILE 2500.0007
ARG 2510.0006
ASN 2520.0009
LEU 2530.0010
SER 2540.0016
LEU 2550.0019
SER 2560.0022
ASN 2570.0023
SER 2580.0024
GLN 2590.0024
LEU 2600.0021
SER 2610.0018
THR 2620.0018
THR 2630.0016
SER 2640.0016
ASN 2650.0014
THR 2660.0019
THR 2670.0018
PHE 2680.0015
LEU 2690.0016
GLY 2700.0014
LEU 2710.0011
LYS 2720.0013
TRP 2730.0013
THR 2740.0008
ASN 2750.0006
LEU 2760.0010
THR 2770.0008
MET 2780.0010
LEU 2790.0012
ASP 2800.0014
LEU 2810.0021
SER 2820.0019
TYR 2830.0017
ASN 2840.0017
ASN 2850.0016
LEU 2860.0017
ASN 2870.0021
VAL 2880.0020
VAL 2890.0015
GLY 2900.0017
ASN 2910.0013
ASP 2920.0015
SER 2930.0015
PHE 2940.0016
ALA 2950.0017
TRP 2960.0015
LEU 2970.0015
PRO 2980.0016
GLN 2990.0015
LEU 3000.0016
GLU 3010.0024
TYR 3020.0024
PHE 3030.0022
PHE 3040.0021
LEU 3050.0020
GLU 3060.0027
TYR 3070.0024
ASN 3080.0019
ASN 3090.0020
ILE 3100.0019
GLN 3110.0027
HIS 3120.0023
LEU 3130.0020
PHE 3140.0017
SER 3150.0016
HIS 3160.0016
SER 3170.0016
LEU 3180.0018
HIS 3190.0018
GLY 3200.0020
LEU 3210.0023
PHE 3220.0026
ASN 3230.0028
VAL 3240.0027
ARG 3250.0030
TYR 3260.0033
LEU 3270.0029
ASN 3280.0029
LEU 3290.0025
LYS 3300.0027
ARG 3310.0032
SER 3320.0024
PHE 3330.0025
THR 3340.0031
LYS 3350.0041
GLN 3360.0072
SER 3370.0094
ILE 3380.0125
SER 3390.0149
LEU 3400.0136
ALA 3410.0090
SER 3420.0069
LEU 3430.0052
PRO 3440.0026
LYS 3450.0018
ILE 3460.0020
ASP 3470.0019
ASP 3480.0020
PHE 3490.0022
SER 3500.0022
PHE 3510.0024
GLN 3520.0025
TRP 3530.0025
LEU 3540.0028
LYS 3550.0031
CYS 3560.0035
LEU 3570.0033
GLU 3580.0034
HIS 3590.0033
LEU 3600.0029
ASN 3610.0032
MET 3620.0028
GLU 3630.0030
ASP 3640.0030
ASN 3650.0026
ASP 3660.0034
ILE 3670.0029
PRO 3680.0025
GLY 3690.0025
ILE 3700.0027
LYS 3710.0022
SER 3720.0023
ASN 3730.0025
MET 3740.0025
PHE 3750.0028
THR 3760.0028
GLY 3770.0030
LEU 3780.0031
ILE 3790.0033
ASN 3800.0034
LEU 3810.0032
LYS 3820.0032
TYR 3830.0030
LEU 3840.0026
SER 3850.0024
LEU 3860.0024
SER 3870.0023
ASN 3880.0023
SER 3890.0024
PHE 3900.0022
THR 3910.0021
SER 3920.0012
LEU 3930.0014
ARG 3940.0011
THR 3950.0017
LEU 3960.0016
THR 3970.0019
ASN 3980.0025
GLU 3990.0024
THR 4000.0021
PHE 4010.0023
VAL 4020.0027
SER 4030.0029
LEU 4040.0029
ALA 4050.0031
HIS 4060.0031
SER 4070.0030
PRO 4080.0030
LEU 4090.0026
HIS 4100.0024
ILE 4110.0020
LEU 4120.0018
ASN 4130.0015
LEU 4140.0013
THR 4150.0011
LYS 4160.0010
ASN 4170.0011
LYS 4180.0009
ILE 4190.0008
SER 4200.0013
LYS 4210.0019
ILE 4220.0021
GLU 4230.0023
SER 4240.0027
ASP 4250.0027
ALA 4260.0021
PHE 4270.0022
SER 4280.0027
TRP 4290.0028
LEU 4300.0026
GLY 4310.0028
HIS 4320.0026
LEU 4330.0020
GLU 4340.0018
VAL 4350.0016
LEU 4360.0016
ASP 4370.0014
LEU 4380.0014
GLY 4390.0013
LEU 4400.0013
ASN 4410.0012
GLU 4420.0018
ILE 4430.0021
GLY 4440.0027
GLN 4450.0031
GLU 4460.0035
LEU 4470.0034
THR 4480.0037
GLY 4490.0036
GLN 4500.0035
GLU 4510.0027
TRP 4520.0028
ARG 4530.0031
GLY 4540.0031
LEU 4550.0028
GLU 4560.0026
ASN 4570.0022
ILE 4580.0021
PHE 4590.0023
GLU 4600.0023
ILE 4610.0025
TYR 4620.0025
LEU 4630.0025
SER 4640.0024
TYR 4650.0024
ASN 4660.0024
LYS 4670.0027
TYR 4680.0031
LEU 4690.0032
GLN 4700.0037
LEU 4710.0037
THR 4720.0039
ARG 4730.0040
ASN 4740.0039
SER 4750.0037
PHE 4760.0034
ALA 4770.0035
LEU 4780.0035
VAL 4790.0034
PRO 4800.0033
SER 4810.0033
LEU 4820.0032
GLN 4830.0032
ARG 4840.0033
LEU 4850.0032
MET 4860.0030
LEU 4870.0030
ARG 4880.0029
ARG 4890.0030
VAL 4900.0031
ALA 4910.0032
LEU 4920.0033
LYS 4930.0035
ASN 4940.0036
VAL 4950.0034
ASP 4960.0030
SER 4970.0033
SER 4980.0032
PRO 4990.0032
SER 5000.0032
PRO 5010.0034
PHE 5020.0033
GLN 5030.0033
PRO 5040.0036
LEU 5050.0036
ARG 5060.0037
ASN 5070.0041
LEU 5080.0037
THR 5090.0034
ILE 5100.0033
LEU 5110.0029
ASP 5120.0029
LEU 5130.0028
SER 5140.0027
ASN 5150.0028
ASN 5160.0029
ASN 5170.0025
ILE 5180.0023
ALA 5190.0019
ASN 5200.0017
ILE 5210.0017
ASN 5220.0015
ASP 5230.0013
ASP 5240.0019
MET 5250.0021
LEU 5260.0020
GLU 5270.0023
GLY 5280.0030
LEU 5290.0030
GLU 5300.0032
LYS 5310.0034
LEU 5320.0028
GLU 5330.0027
ILE 5340.0025
LEU 5350.0021
ASP 5360.0022
LEU 5370.0018
GLN 5380.0019
HIS 5390.0021
ASN 5400.0018
ASN 5410.0018
LEU 5420.0011
ALA 5430.0012
ARG 5440.0013
LEU 5450.0005
TRP 5460.0010
LYS 5470.0017
HIS 5480.0022
ALA 5490.0026
ASN 5500.0020
PRO 5510.0023
GLY 5520.0021
GLY 5530.0021
PRO 5540.0013
ILE 5550.0007
TYR 5560.0010
PHE 5570.0010
LEU 5580.0012
LYS 5590.0018
GLY 5600.0024
LEU 5610.0020
SER 5620.0023
HIS 5630.0024
LEU 5640.0018
HIS 5650.0017
ILE 5660.0015
LEU 5670.0011
ASN 5680.0011
LEU 5690.0008
GLU 5700.0011
SER 5710.0016
ASN 5720.0013
GLY 5730.0015
PHE 5740.0011
ASP 5750.0016
GLU 5760.0016
ILE 5770.0012
PRO 5780.0016
VAL 5790.0019
GLU 5800.0019
VAL 5810.0014
PHE 5820.0014
LYS 5830.0019
ASP 5840.0021
LEU 5850.0017
PHE 5860.0016
GLU 5870.0015
LEU 5880.0012
LYS 5890.0010
ILE 5900.0007
ILE 5910.0006
ASP 5920.0006
LEU 5930.0006
GLY 5940.0010
LEU 5950.0014
ASN 5960.0013
ASN 5970.0015
LEU 5980.0013
ASN 5990.0014
THR 6000.0015
LEU 6010.0014
PRO 6020.0017
ALA 6030.0017
SER 6040.0016
VAL 6050.0014
PHE 6060.0012
ASN 6070.0013
ASN 6080.0016
GLN 6090.0012
VAL 6100.0012
SER 6110.0012
LEU 6120.0008
LYS 6130.0007
SER 6140.0005
LEU 6150.0006
ASN 6160.0008
LEU 6170.0009
GLN 6180.0011
LYS 6190.0013
ASN 6200.0013
LEU 6210.0015
ILE 6220.0012
THR 6230.0011
SER 6240.0009
VAL 6250.0008
GLU 6260.0008
LYS 6270.0006
LYS 6280.0009
VAL 6290.0010
PHE 6300.0007
GLY 6310.0007
PRO 6320.0008
ALA 6330.0007
PHE 6340.0005
ARG 6350.0004
ASN 6360.0006
LEU 6370.0005
THR 6380.0005
GLU 6390.0007
LEU 6400.0008
ASP 6410.0011
MET 6420.0011
ARG 6430.0013
PHE 6440.0015
ASN 6450.0013
PRO 6460.0017
PHE 6470.0013
ASP 6480.0011
CYS 6490.0012
THR 6500.0009
CYS 6510.0008
GLU 6520.0004
SER 6530.0006
ILE 6540.0008
ALA 6550.0008
TRP 6560.0007
PHE 6570.0008
VAL 6580.0010
ASN 6590.0008
TRP 6600.0007
ILE 6610.0011
ASN 6620.0012
GLU 6630.0011
THR 6640.0017
HIS 6650.0026
THR 6660.0005
ASN 6670.0007
ILE 6680.0011
PRO 6690.0013
GLU 6700.0017
LEU 6710.0016
SER 6720.0018
SER 6730.0020
HIS 6740.0019
TYR 6750.0016
LEU 6760.0020
CYS 6770.0019
ASN 6780.0021
THR 6790.0018
PRO 6800.0019
PRO 6810.0026
HIS 6820.0027
TYR 6830.0024
HIS 6840.0026
GLY 6850.0028
PHE 6860.0024
PRO 6870.0022
VAL 6880.0017
ARG 6890.0017
LEU 6900.0020
PHE 6910.0020
ASP 6920.0021
THR 6930.0017
SER 6940.0022
SER 6950.0022
CYS 6960.0017
GLU 10.0237
ALA 20.0206
ALA 30.0188
ALA 40.0159
LYS 50.0126
MET 60.0107
GLN 70.0097
ARG 80.0067
LEU 90.0061
VAL 100.0068
LEU 110.0053
LEU 120.0036
LEU 130.0040
ALA 140.0051
ILE 150.0041
SER 160.0034
LEU 170.0047
LEU 180.0056
LEU 190.0047
TYR 200.0046
GLN 210.0066
ASP 220.0078
LEU 230.0067
PRO 240.0075
VAL 250.0056
ARG 260.0027
SER 270.0024
GLU 280.0043
PHE 290.0054
GLU 300.0031
LEU 310.0011
ASP 320.0025
ARG 330.0020
ILE 340.0001
CYS 350.0015
GLY 360.0029
TYR 370.0040
GLY 380.0025
THR 390.0033
ALA 400.0013
ARG 410.0004
CYS 420.0010
ARG 430.0015
LYS 440.0020
LYS 450.0017
CYS 460.0021
ARG 470.0028
SER 480.0032
GLN 490.0032
GLU 500.0024
TYR 510.0018
ARG 520.0009
ILE 530.0017
GLY 540.0018
ARG 550.0022
CYS 560.0029
PRO 570.0040
ASN 580.0039
THR 590.0031
TYR 600.0023
ALA 610.0015
CYS 620.0006
CYS 630.0010
LEU 640.0016
ARG 650.0027
LYS 660.0051
TRP 670.0067
ASP 680.0037
GLU 690.0041
SER 700.0026
LEU 710.0053
LEU 720.0086
ASN 730.0077
ARG 740.0044
THR 750.0072
LYS 760.0098
PRO 770.0099
GLU 780.0195
ALA 790.0151
ALA 800.0184
ALA 810.0299
LYS 820.0279
LYS 830.0228
GLU 840.0220
MET 850.0170
ASN 860.0168
LEU 870.0133
SER 880.0154
VAL 890.0147
GLY 900.0177
LEU 910.0198
GLY 920.0283
GLY 930.0343
GLY 940.0352
SER 950.0278
ASN 960.0214
LEU 970.0194
SER 980.0193
VAL 990.0178
GLY 1000.0196
LEU 1010.0170
GLY 1020.0209
GLU 1030.0193
ILE 1040.0152
GLY 1050.0151
GLY 1060.0148
GLY 1070.0125
SER 1080.0143
LYS 1090.0108
LEU 1100.0168
LEU 1110.0104
ASP 1120.0115
ILE 1130.0120
ASN 1140.0190
LEU 1150.0207
GLY 1160.0398
ARG 1170.0535
GLY 1180.0301
GLY 1190.0352
GLY 1200.0462
SER 1210.0219
MET 1220.0167
VAL 1230.0132
ASP 1240.0101
LEU 1250.0068
THR 1260.0062
PHE 1270.0064
GLY 1280.0090
GLY 1290.0095
VAL 1300.0118
GLY 1310.0077
GLY 1320.0075
GLY 1330.0065
SER 1340.0058
THR 1350.0046
PHE 1360.0038
THR 1370.0052
PHE 1380.0051
PHE 1390.0068
PRO 1400.0071
LEU 1410.0157
VAL 1420.0248
ILE 1430.0247
GLY 1440.0328
GLY 1450.0371
GLY 1460.0245
SER 1470.0201
ASP 1480.0240
ALA 1490.0144
MET 1500.0136
TYR 1510.0033
LEU 1520.0035
GLY 1530.0038
PHE 1540.0042
ALA 1550.0046
ALA 1560.0062
GLY 1570.0056
GLY 1580.0047
GLY 1590.0036
SER 1600.0023
ALA 1610.0082
GLY 1620.0080
GLY 1630.0064
GLU 1640.0046
ASN 1650.0033
HIS 1660.0039
VAL 1670.0062
ALA 1680.0081
PHE 1690.0117
GLY 1700.0133
PRO 1710.0218
GLY 1720.0298
PRO 1730.0378
GLY 1740.0284
VAL 1750.0157
ASP 1760.0131
LEU 1770.0083
THR 1780.0085
PHE 1790.0080
GLY 1800.0103
GLY 1810.0148
VAL 1820.0181
GLN 1830.0180
PHE 1840.0172
ALA 1850.0207
MET 1860.0192
VAL 1870.0191
ASN 1880.0148
ASN 1890.0083
GLY 1900.0269
PRO 1910.0475
GLY 1920.0330
PRO 1930.0218
GLY 1940.0132
GLU 1950.0126
SER 1960.0162
PHE 1970.0116
THR 1980.0056
ALA 1990.0050
GLN 2000.0063
PRO 2010.0065
ALA 2020.0121
ASP 2030.0147
MET 2040.0089
GLN 2050.0096
ALA 2060.0087
GLY 2070.0153
ILE 2080.0086
LYS 2090.0094
GLY 2100.0154
PRO 2110.0129
GLY 2120.0091
PRO 2130.0092
GLY 2140.0107
GLY 2150.0145
SER 2160.0153
ILE 2170.0139
GLN 2180.0201
VAL 2190.0148
ILE 2200.0284
ASN 2210.0248
GLY 2220.0153
SER 2230.0263
THR 2240.0347
ILE 2250.0293
GLY 2260.0271
THR 2270.0128
GLY 2280.0079
SER 2290.0261
LYS 2300.0220
LYS 2310.0123
THR 2320.0095
ILE 2330.0101
LEU 2340.0055
ILE 2350.0085
TYR 2360.0101
SER 2370.0159
ILE 2380.0185
ILE 2390.0153
GLY 2400.0217
VAL 2410.0271
LYS 2420.0280
LYS 2430.0275
GLY 2440.0270
THR 2450.0287
LEU 2460.0224
ALA 2470.0152
TRP 2480.0085
ALA 2490.0045
ARG 2500.0051
THR 2510.0130
GLY 2520.0128
PHE 2530.0080
SER 2540.0082
PRO 2550.0072
ALA 2560.0128
LYS 2570.0153
LYS 2580.0167
LEU 2590.0437
ASN 2600.0675
ALA 2610.0676
GLY 2620.0470
VAL 2630.0296
VAL 2640.0245
ARG 2650.0134
VAL 2660.0182
PHE 2670.0188
PHE 2680.0315
LEU 2690.0360
ASN 2700.0478
GLN 2710.0458
LYS 2720.0379
LYS 2730.0342
ALA 2740.0336
LYS 2750.0308
ASP 2760.0183
VAL 2770.0208
LEU 2780.0321
ARG 2790.0231
LYS 2800.0152
THR 2810.0306
SER 2820.0046
ARG 2830.0144
PRO 2840.0207
MET 2850.0450
VAL 2860.0360
ASP 2870.0346
LEU 2880.0380
THR 2890.0496
PHE 2900.0490
GLY 2910.0502
GLY 2920.0765

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.