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***  TLR_3_simulation  ***

<R2> analysis for 2608260340483950756

---  normal mode 61  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0779
THR 260.0032
LYS 270.0027
CYS 280.0020
THR 290.0019
VAL 300.0027
SER 310.0029
HIS 320.0044
GLU 330.0046
VAL 340.0032
ALA 350.0020
ASP 360.0008
CYS 370.0005
SER 380.0009
HIS 390.0018
LEU 400.0019
LYS 410.0029
LEU 420.0029
THR 430.0040
GLN 440.0038
VAL 450.0028
PRO 460.0037
ASP 470.0047
ASP 480.0053
LEU 490.0043
PRO 500.0052
THR 510.0054
ASN 520.0057
ILE 530.0041
THR 540.0042
VAL 550.0032
LEU 560.0017
ASN 570.0015
LEU 580.0010
THR 590.0020
HIS 600.0025
ASN 610.0027
GLN 620.0039
LEU 630.0033
ARG 640.0045
ARG 650.0036
LEU 660.0028
PRO 670.0034
ALA 680.0028
ALA 690.0040
ASN 700.0034
PHE 710.0025
THR 720.0037
ARG 730.0044
TYR 740.0032
SER 750.0035
GLN 760.0042
LEU 770.0030
THR 780.0041
SER 790.0036
LEU 800.0025
ASP 810.0031
VAL 820.0028
GLY 830.0041
PHE 840.0048
ASN 850.0043
THR 860.0050
ILE 870.0044
SER 880.0053
LYS 890.0046
LEU 900.0033
GLU 910.0030
PRO 920.0023
GLU 930.0019
LEU 940.0011
CYS 950.0005
GLN 960.0010
LYS 970.0015
LEU 980.0012
PRO 990.0021
MET 1000.0031
LEU 1010.0031
LYS 1020.0043
VAL 1030.0048
LEU 1040.0044
ASN 1050.0053
LEU 1060.0050
GLN 1070.0065
HIS 1080.0073
ASN 1090.0065
GLU 1100.0069
LEU 1110.0062
SER 1120.0066
GLN 1130.0057
LEU 1140.0047
SER 1150.0039
ASP 1160.0032
LYS 1170.0029
THR 1180.0032
PHE 1190.0028
ALA 1200.0019
PHE 1210.0014
CYS 1220.0022
THR 1230.0024
ASN 1240.0033
LEU 1250.0039
THR 1260.0052
GLU 1270.0057
LEU 1280.0055
HIS 1290.0064
LEU 1300.0065
MET 1310.0075
SER 1320.0084
ASN 1330.0076
SER 1340.0082
ILE 1350.0070
GLN 1360.0068
LYS 1370.0059
ILE 1380.0048
LYS 1390.0046
ASN 1400.0038
ASN 1410.0028
PRO 1420.0031
PHE 1430.0027
VAL 1440.0017
LYS 1450.0018
GLN 1460.0027
LYS 1470.0029
ASN 1480.0041
LEU 1490.0043
ILE 1500.0053
THR 1510.0059
LEU 1520.0055
ASP 1530.0065
LEU 1540.0065
SER 1550.0077
HIS 1560.0088
ASN 1570.0083
GLY 1580.0083
LEU 1590.0067
SER 1600.0066
SER 1610.0054
THR 1620.0039
LYS 1630.0035
LEU 1640.0032
GLY 1650.0026
THR 1660.0029
GLN 1670.0024
VAL 1680.0021
GLN 1690.0019
LEU 1700.0027
GLU 1710.0032
ASN 1720.0045
LEU 1730.0041
GLN 1740.0050
GLU 1750.0053
LEU 1760.0045
LEU 1770.0056
LEU 1780.0054
SER 1790.0067
ASN 1800.0080
ASN 1810.0075
LYS 1820.0077
ILE 1830.0058
GLN 1840.0062
ALA 1850.0051
LEU 1860.0040
LYS 1870.0045
SER 1880.0043
GLU 1890.0044
GLU 1900.0034
LEU 1910.0020
ASP 1920.0027
ILE 1930.0017
PHE 1940.0021
ALA 1950.0035
ASN 1960.0041
SER 1970.0036
SER 1980.0045
LEU 1990.0037
LYS 2000.0050
LYS 2010.0044
LEU 2020.0031
GLU 2030.0041
LEU 2040.0038
SER 2050.0050
SER 2060.0060
ASN 2070.0056
GLN 2080.0061
ILE 2090.0050
LYS 2100.0063
GLU 2110.0057
PHE 2120.0046
SER 2130.0056
PRO 2140.0062
GLY 2150.0055
CYS 2160.0037
PHE 2170.0029
HIS 2180.0043
ALA 2190.0036
ILE 2200.0030
GLY 2210.0044
ARG 2220.0045
LEU 2230.0032
PHE 2240.0040
GLY 2250.0030
LEU 2260.0017
PHE 2270.0022
LEU 2280.0022
ASN 2290.0034
ASN 2300.0046
VAL 2310.0036
GLN 2320.0039
LEU 2330.0034
GLY 2340.0036
PRO 2350.0038
SER 2360.0048
LEU 2370.0042
THR 2380.0031
GLU 2390.0042
LYS 2400.0045
LEU 2410.0033
CYS 2420.0035
LEU 2430.0048
GLU 2440.0042
LEU 2450.0035
ALA 2460.0049
ASN 2470.0056
THR 2480.0045
SER 2490.0046
ILE 2500.0034
ARG 2510.0033
ASN 2520.0023
LEU 2530.0011
SER 2540.0008
LEU 2550.0010
SER 2560.0016
ASN 2570.0021
SER 2580.0024
GLN 2590.0027
LEU 2600.0024
SER 2610.0027
THR 2620.0026
THR 2630.0024
SER 2640.0027
ASN 2650.0029
THR 2660.0042
THR 2670.0034
PHE 2680.0032
LEU 2690.0040
GLY 2700.0039
LEU 2710.0036
LYS 2720.0046
TRP 2730.0048
THR 2740.0040
ASN 2750.0041
LEU 2760.0025
THR 2770.0022
MET 2780.0014
LEU 2790.0010
ASP 2800.0004
LEU 2810.0015
SER 2820.0015
TYR 2830.0015
ASN 2840.0018
ASN 2850.0023
LEU 2860.0024
ASN 2870.0032
VAL 2880.0029
VAL 2890.0019
GLY 2900.0020
ASN 2910.0021
ASP 2920.0021
SER 2930.0021
PHE 2940.0021
ALA 2950.0022
TRP 2960.0030
LEU 2970.0027
PRO 2980.0029
GLN 2990.0026
LEU 3000.0022
GLU 3010.0020
TYR 3020.0019
PHE 3030.0020
PHE 3040.0019
LEU 3050.0020
GLU 3060.0028
TYR 3070.0027
ASN 3080.0024
ASN 3090.0030
ILE 3100.0028
GLN 3110.0042
HIS 3120.0034
LEU 3130.0026
PHE 3140.0018
SER 3150.0015
HIS 3160.0018
SER 3170.0020
LEU 3180.0020
HIS 3190.0019
GLY 3200.0018
LEU 3210.0023
PHE 3220.0024
ASN 3230.0025
VAL 3240.0026
ARG 3250.0029
TYR 3260.0032
LEU 3270.0030
ASN 3280.0031
LEU 3290.0029
LYS 3300.0031
ARG 3310.0041
SER 3320.0027
PHE 3330.0035
THR 3340.0048
LYS 3350.0064
GLN 3360.0118
SER 3370.0157
ILE 3380.0208
SER 3390.0249
LEU 3400.0228
ALA 3410.0149
SER 3420.0114
LEU 3430.0085
PRO 3440.0040
LYS 3450.0023
ILE 3460.0026
ASP 3470.0022
ASP 3480.0024
PHE 3490.0023
SER 3500.0022
PHE 3510.0026
GLN 3520.0025
TRP 3530.0024
LEU 3540.0027
LYS 3550.0028
CYS 3560.0032
LEU 3570.0031
GLU 3580.0031
HIS 3590.0031
LEU 3600.0030
ASN 3610.0035
MET 3620.0033
GLU 3630.0036
ASP 3640.0037
ASN 3650.0034
ASP 3660.0050
ILE 3670.0041
PRO 3680.0037
GLY 3690.0036
ILE 3700.0036
LYS 3710.0028
SER 3720.0029
ASN 3730.0027
MET 3740.0027
PHE 3750.0029
THR 3760.0028
GLY 3770.0029
LEU 3780.0030
ILE 3790.0030
ASN 3800.0031
LEU 3810.0027
LYS 3820.0027
TYR 3830.0026
LEU 3840.0024
SER 3850.0024
LEU 3860.0026
SER 3870.0025
ASN 3880.0026
SER 3890.0027
PHE 3900.0028
THR 3910.0030
SER 3920.0019
LEU 3930.0018
ARG 3940.0016
THR 3950.0021
LEU 3960.0018
THR 3970.0018
ASN 3980.0020
GLU 3990.0020
THR 4000.0019
PHE 4010.0022
VAL 4020.0024
SER 4030.0028
LEU 4040.0026
ALA 4050.0026
HIS 4060.0026
SER 4070.0025
PRO 4080.0021
LEU 4090.0020
HIS 4100.0018
ILE 4110.0017
LEU 4120.0015
ASN 4130.0015
LEU 4140.0012
THR 4150.0012
LYS 4160.0012
ASN 4170.0013
LYS 4180.0015
ILE 4190.0010
SER 4200.0016
LYS 4210.0020
ILE 4220.0020
GLU 4230.0019
SER 4240.0018
ASP 4250.0019
ALA 4260.0018
PHE 4270.0017
SER 4280.0015
TRP 4290.0018
LEU 4300.0017
GLY 4310.0016
HIS 4320.0018
LEU 4330.0023
GLU 4340.0029
VAL 4350.0036
LEU 4360.0028
ASP 4370.0028
LEU 4380.0026
GLY 4390.0025
LEU 4400.0025
ASN 4410.0023
GLU 4420.0026
ILE 4430.0026
GLY 4440.0030
GLN 4450.0030
GLU 4460.0033
LEU 4470.0033
THR 4480.0031
GLY 4490.0032
GLN 4500.0029
GLU 4510.0026
TRP 4520.0029
ARG 4530.0024
GLY 4540.0022
LEU 4550.0028
GLU 4560.0030
ASN 4570.0037
ILE 4580.0042
PHE 4590.0053
GLU 4600.0056
ILE 4610.0047
TYR 4620.0046
LEU 4630.0041
SER 4640.0041
TYR 4650.0040
ASN 4660.0035
LYS 4670.0034
TYR 4680.0033
LEU 4690.0033
GLN 4700.0033
LEU 4710.0034
THR 4720.0033
ARG 4730.0036
ASN 4740.0040
SER 4750.0041
PHE 4760.0043
ALA 4770.0042
LEU 4780.0041
VAL 4790.0052
PRO 4800.0060
SER 4810.0075
LEU 4820.0070
GLN 4830.0076
ARG 4840.0070
LEU 4850.0059
MET 4860.0051
LEU 4870.0045
ARG 4880.0045
ARG 4890.0043
VAL 4900.0040
ALA 4910.0035
LEU 4920.0034
LYS 4930.0029
ASN 4940.0027
VAL 4950.0030
ASP 4960.0023
SER 4970.0029
SER 4980.0036
PRO 4990.0046
SER 5000.0044
PRO 5010.0047
PHE 5020.0053
GLN 5030.0060
PRO 5040.0072
LEU 5050.0073
ARG 5060.0100
ASN 5070.0108
LEU 5080.0086
THR 5090.0078
ILE 5100.0068
LEU 5110.0052
ASP 5120.0050
LEU 5130.0040
SER 5140.0041
ASN 5150.0041
ASN 5160.0034
ASN 5170.0026
ILE 5180.0016
ALA 5190.0007
ASN 5200.0007
ILE 5210.0015
ASN 5220.0029
ASP 5230.0036
ASP 5240.0047
MET 5250.0040
LEU 5260.0045
GLU 5270.0068
GLY 5280.0089
LEU 5290.0076
GLU 5300.0089
LYS 5310.0073
LEU 5320.0056
GLU 5330.0044
ILE 5340.0040
LEU 5350.0029
ASP 5360.0039
LEU 5370.0030
GLN 5380.0038
HIS 5390.0041
ASN 5400.0029
ASN 5410.0027
LEU 5420.0018
ALA 5430.0029
ARG 5440.0029
LEU 5450.0018
TRP 5460.0023
LYS 5470.0039
HIS 5480.0047
ALA 5490.0056
ASN 5500.0044
PRO 5510.0057
GLY 5520.0056
GLY 5530.0048
PRO 5540.0032
ILE 5550.0023
TYR 5560.0024
PHE 5570.0023
LEU 5580.0020
LYS 5590.0031
GLY 5600.0040
LEU 5610.0038
SER 5620.0036
HIS 5630.0036
LEU 5640.0027
HIS 5650.0031
ILE 5660.0038
LEU 5670.0032
ASN 5680.0038
LEU 5690.0034
GLU 5700.0045
SER 5710.0050
ASN 5720.0041
GLY 5730.0045
PHE 5740.0040
ASP 5750.0045
GLU 5760.0041
ILE 5770.0031
PRO 5780.0025
VAL 5790.0025
GLU 5800.0013
VAL 5810.0018
PHE 5820.0017
LYS 5830.0020
ASP 5840.0020
LEU 5850.0018
PHE 5860.0025
GLU 5870.0027
LEU 5880.0030
LYS 5890.0039
ILE 5900.0042
ILE 5910.0044
ASP 5920.0050
LEU 5930.0050
GLY 5940.0058
LEU 5950.0062
ASN 5960.0059
ASN 5970.0059
LEU 5980.0055
ASN 5990.0052
THR 6000.0052
LEU 6010.0046
PRO 6020.0042
ALA 6030.0042
SER 6040.0039
VAL 6050.0038
PHE 6060.0041
ASN 6070.0041
ASN 6080.0037
GLN 6090.0038
VAL 6100.0040
SER 6110.0043
LEU 6120.0046
LYS 6130.0049
SER 6140.0052
LEU 6150.0052
ASN 6160.0058
LEU 6170.0058
GLN 6180.0057
LYS 6190.0059
ASN 6200.0062
LEU 6210.0062
ILE 6220.0061
THR 6230.0059
SER 6240.0065
VAL 6250.0061
GLU 6260.0052
LYS 6270.0054
LYS 6280.0062
VAL 6290.0061
PHE 6300.0055
GLY 6310.0053
PRO 6320.0056
ALA 6330.0054
PHE 6340.0051
ARG 6350.0054
ASN 6360.0052
LEU 6370.0051
THR 6380.0050
GLU 6390.0049
LEU 6400.0047
ASP 6410.0050
MET 6420.0048
ARG 6430.0042
PHE 6440.0043
ASN 6450.0049
PRO 6460.0055
PHE 6470.0053
ASP 6480.0073
CYS 6490.0071
THR 6500.0091
CYS 6510.0085
GLU 6520.0095
SER 6530.0080
ILE 6540.0055
ALA 6550.0053
TRP 6560.0040
PHE 6570.0033
VAL 6580.0020
ASN 6590.0016
TRP 6600.0024
ILE 6610.0013
ASN 6620.0009
GLU 6630.0019
THR 6640.0028
HIS 6650.0038
THR 6660.0038
ASN 6670.0037
ILE 6680.0032
PRO 6690.0033
GLU 6700.0027
LEU 6710.0016
SER 6720.0018
SER 6730.0013
HIS 6740.0012
TYR 6750.0018
LEU 6760.0028
CYS 6770.0055
ASN 6780.0072
THR 6790.0098
PRO 6800.0113
PRO 6810.0126
HIS 6820.0127
TYR 6830.0095
HIS 6840.0087
GLY 6850.0062
PHE 6860.0064
PRO 6870.0040
VAL 6880.0034
ARG 6890.0025
LEU 6900.0054
PHE 6910.0057
ASP 6920.0079
THR 6930.0072
SER 6940.0096
SER 6950.0119
CYS 6960.0108
GLU 10.0404
ALA 20.0351
ALA 30.0319
ALA 40.0272
LYS 50.0215
MET 60.0182
GLN 70.0164
ARG 80.0114
LEU 90.0105
VAL 100.0113
LEU 110.0087
LEU 120.0058
LEU 130.0064
ALA 140.0079
ILE 150.0059
SER 160.0046
LEU 170.0069
LEU 180.0084
LEU 190.0070
TYR 200.0075
GLN 210.0116
ASP 220.0132
LEU 230.0126
PRO 240.0157
VAL 250.0134
ARG 260.0046
SER 270.0051
GLU 280.0050
PHE 290.0072
GLU 300.0058
LEU 310.0031
ASP 320.0034
ARG 330.0038
ILE 340.0027
CYS 350.0022
GLY 360.0022
TYR 370.0029
GLY 380.0028
THR 390.0024
ALA 400.0018
ARG 410.0016
CYS 420.0018
ARG 430.0019
LYS 440.0019
LYS 450.0017
CYS 460.0018
ARG 470.0024
SER 480.0028
GLN 490.0024
GLU 500.0018
TYR 510.0017
ARG 520.0012
ILE 530.0017
GLY 540.0019
ARG 550.0020
CYS 560.0024
PRO 570.0036
ASN 580.0035
THR 590.0025
TYR 600.0017
ALA 610.0012
CYS 620.0011
CYS 630.0010
LEU 640.0010
ARG 650.0015
LYS 660.0032
TRP 670.0038
ASP 680.0021
GLU 690.0031
SER 700.0028
LEU 710.0028
LEU 720.0048
ASN 730.0052
ARG 740.0031
THR 750.0046
LYS 760.0057
PRO 770.0052
GLU 780.0056
ALA 790.0048
ALA 800.0099
ALA 810.0130
LYS 820.0120
LYS 830.0107
GLU 840.0101
MET 850.0087
ASN 860.0062
LEU 870.0066
SER 880.0053
VAL 890.0079
GLY 900.0091
LEU 910.0158
GLY 920.0232
GLY 930.0359
GLY 940.0331
SER 950.0276
ASN 960.0145
LEU 970.0143
SER 980.0104
VAL 990.0124
GLY 1000.0117
LEU 1010.0114
GLY 1020.0075
GLU 1030.0094
ILE 1040.0140
GLY 1050.0216
GLY 1060.0322
GLY 1070.0207
SER 1080.0155
LYS 1090.0091
LEU 1100.0137
LEU 1110.0146
ASP 1120.0169
ILE 1130.0131
ASN 1140.0179
LEU 1150.0147
GLY 1160.0161
ARG 1170.0170
GLY 1180.0159
GLY 1190.0146
GLY 1200.0150
SER 1210.0084
MET 1220.0043
VAL 1230.0044
ASP 1240.0015
LEU 1250.0047
THR 1260.0045
PHE 1270.0052
GLY 1280.0057
GLY 1290.0063
VAL 1300.0069
GLY 1310.0020
GLY 1320.0012
GLY 1330.0031
SER 1340.0031
THR 1350.0042
PHE 1360.0044
THR 1370.0075
PHE 1380.0036
PHE 1390.0070
PRO 1400.0046
LEU 1410.0088
VAL 1420.0172
ILE 1430.0258
GLY 1440.0372
GLY 1450.0460
GLY 1460.0372
SER 1470.0293
ASP 1480.0181
ALA 1490.0195
MET 1500.0138
TYR 1510.0122
LEU 1520.0074
GLY 1530.0057
PHE 1540.0058
ALA 1550.0081
ALA 1560.0055
GLY 1570.0057
GLY 1580.0051
GLY 1590.0049
SER 1600.0042
ALA 1610.0048
GLY 1620.0037
GLY 1630.0048
GLU 1640.0050
ASN 1650.0038
HIS 1660.0057
VAL 1670.0062
ALA 1680.0063
PHE 1690.0067
GLY 1700.0069
PRO 1710.0077
GLY 1720.0107
PRO 1730.0134
GLY 1740.0109
VAL 1750.0075
ASP 1760.0081
LEU 1770.0051
THR 1780.0084
PHE 1790.0080
GLY 1800.0117
GLY 1810.0181
VAL 1820.0173
GLN 1830.0148
PHE 1840.0111
ALA 1850.0107
MET 1860.0062
VAL 1870.0068
ASN 1880.0069
ASN 1890.0058
GLY 1900.0100
PRO 1910.0064
GLY 1920.0158
PRO 1930.0186
GLY 1940.0163
GLU 1950.0121
SER 1960.0160
PHE 1970.0126
THR 1980.0113
ALA 1990.0116
GLN 2000.0101
PRO 2010.0181
ALA 2020.0276
ASP 2030.0241
MET 2040.0432
GLN 2050.0580
ALA 2060.0464
GLY 2070.0656
ILE 2080.0541
LYS 2090.0564
GLY 2100.0779
PRO 2110.0500
GLY 2120.0415
PRO 2130.0324
GLY 2140.0485
GLY 2150.0587
SER 2160.0495
ILE 2170.0486
GLN 2180.0396
VAL 2190.0311
ILE 2200.0417
ASN 2210.0405
GLY 2220.0279
SER 2230.0113
THR 2240.0202
ILE 2250.0258
GLY 2260.0422
THR 2270.0379
GLY 2280.0262
SER 2290.0201
LYS 2300.0191
LYS 2310.0180
THR 2320.0216
ILE 2330.0206
LEU 2340.0292
ILE 2350.0319
TYR 2360.0358
SER 2370.0271
ILE 2380.0246
ILE 2390.0137
GLY 2400.0262
VAL 2410.0442
LYS 2420.0403
LYS 2430.0398
GLY 2440.0167
THR 2450.0104
LEU 2460.0059
ALA 2470.0049
TRP 2480.0136
ALA 2490.0106
ARG 2500.0194
THR 2510.0191
GLY 2520.0155
PHE 2530.0129
SER 2540.0100
PRO 2550.0092
ALA 2560.0140
LYS 2570.0240
LYS 2580.0139
LEU 2590.0236
ASN 2600.0287
ALA 2610.0419
GLY 2620.0373
VAL 2630.0340
VAL 2640.0329
ARG 2650.0279
VAL 2660.0283
PHE 2670.0208
PHE 2680.0158
LEU 2690.0180
ASN 2700.0276
GLN 2710.0243
LYS 2720.0177
LYS 2730.0165
ALA 2740.0175
LYS 2750.0142
ASP 2760.0098
VAL 2770.0128
LEU 2780.0211
ARG 2790.0191
LYS 2800.0101
THR 2810.0149
SER 2820.0157
ARG 2830.0150
PRO 2840.0156
MET 2850.0162
VAL 2860.0103
ASP 2870.0149
LEU 2880.0102
THR 2890.0217
PHE 2900.0160
GLY 2910.0060
GLY 2920.0332

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.