CNRS Nantes University US2B US2B
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***  TLR_3_simulation  ***

<R2> analysis for 2608260340483950756

---  normal mode 62  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0561
THR 260.0077
LYS 270.0082
CYS 280.0081
THR 290.0070
VAL 300.0081
SER 310.0065
HIS 320.0085
GLU 330.0112
VAL 340.0101
ALA 350.0098
ASP 360.0091
CYS 370.0090
SER 380.0091
HIS 390.0092
LEU 400.0091
LYS 410.0081
LEU 420.0082
THR 430.0074
GLN 440.0081
VAL 450.0078
PRO 460.0100
ASP 470.0111
ASP 480.0131
LEU 490.0124
PRO 500.0135
THR 510.0130
ASN 520.0135
ILE 530.0118
THR 540.0109
VAL 550.0094
LEU 560.0080
ASN 570.0082
LEU 580.0075
THR 590.0074
HIS 600.0076
ASN 610.0058
GLN 620.0052
LEU 630.0042
ARG 640.0044
ARG 650.0037
LEU 660.0030
PRO 670.0047
ALA 680.0031
ALA 690.0060
ASN 700.0069
PHE 710.0057
THR 720.0066
ARG 730.0091
TYR 740.0082
SER 750.0076
GLN 760.0088
LEU 770.0070
THR 780.0077
SER 790.0064
LEU 800.0037
ASP 810.0044
VAL 820.0026
GLY 830.0028
PHE 840.0020
ASN 850.0012
THR 860.0020
ILE 870.0023
SER 880.0048
LYS 890.0050
LEU 900.0037
GLU 910.0037
PRO 920.0044
GLU 930.0028
LEU 940.0012
CYS 950.0033
GLN 960.0021
LYS 970.0013
LEU 980.0030
PRO 990.0045
MET 1000.0062
LEU 1010.0044
LYS 1020.0063
VAL 1030.0061
LEU 1040.0051
ASN 1050.0050
LEU 1060.0047
GLN 1070.0054
HIS 1080.0050
ASN 1090.0045
GLU 1100.0053
LEU 1110.0063
SER 1120.0067
GLN 1130.0068
LEU 1140.0069
SER 1150.0070
ASP 1160.0075
LYS 1170.0072
THR 1180.0068
PHE 1190.0070
ALA 1200.0073
PHE 1210.0068
CYS 1220.0067
THR 1230.0075
ASN 1240.0072
LEU 1250.0070
THR 1260.0069
GLU 1270.0070
LEU 1280.0070
HIS 1290.0071
LEU 1300.0071
MET 1310.0074
SER 1320.0075
ASN 1330.0072
SER 1340.0074
ILE 1350.0072
GLN 1360.0063
LYS 1370.0059
ILE 1380.0058
LYS 1390.0056
ASN 1400.0054
ASN 1410.0060
PRO 1420.0068
PHE 1430.0067
VAL 1440.0062
LYS 1450.0069
GLN 1460.0068
LYS 1470.0063
ASN 1480.0071
LEU 1490.0071
ILE 1500.0074
THR 1510.0076
LEU 1520.0073
ASP 1530.0077
LEU 1540.0074
SER 1550.0076
HIS 1560.0083
ASN 1570.0079
GLY 1580.0074
LEU 1590.0059
SER 1600.0051
SER 1610.0034
THR 1620.0026
LYS 1630.0025
LEU 1640.0041
GLY 1650.0033
THR 1660.0021
GLN 1670.0013
VAL 1680.0022
GLN 1690.0038
LEU 1700.0055
GLU 1710.0050
ASN 1720.0072
LEU 1730.0067
GLN 1740.0080
GLU 1750.0077
LEU 1760.0061
LEU 1770.0066
LEU 1780.0054
SER 1790.0063
ASN 1800.0070
ASN 1810.0064
LYS 1820.0059
ILE 1830.0034
GLN 1840.0040
ALA 1850.0036
LEU 1860.0034
LYS 1870.0052
SER 1880.0064
GLU 1890.0052
GLU 1900.0023
LEU 1910.0026
ASP 1920.0041
ILE 1930.0027
PHE 1940.0053
ALA 1950.0070
ASN 1960.0076
SER 1970.0077
SER 1980.0100
LEU 1990.0089
LYS 2000.0112
LYS 2010.0094
LEU 2020.0066
GLU 2030.0062
LEU 2040.0036
SER 2050.0047
SER 2060.0050
ASN 2070.0034
GLN 2080.0033
ILE 2090.0024
LYS 2100.0048
GLU 2110.0062
PHE 2120.0064
SER 2130.0087
PRO 2140.0110
GLY 2150.0111
CYS 2160.0077
PHE 2170.0085
HIS 2180.0109
ALA 2190.0089
ILE 2200.0089
GLY 2210.0114
ARG 2220.0125
LEU 2230.0111
PHE 2240.0129
GLY 2250.0109
LEU 2260.0082
PHE 2270.0067
LEU 2280.0041
ASN 2290.0047
ASN 2300.0038
VAL 2310.0013
GLN 2320.0017
LEU 2330.0021
GLY 2340.0029
PRO 2350.0045
SER 2360.0069
LEU 2370.0058
THR 2380.0054
GLU 2390.0080
LYS 2400.0089
LEU 2410.0077
CYS 2420.0097
LEU 2430.0118
GLU 2440.0110
LEU 2450.0113
ALA 2460.0140
ASN 2470.0163
THR 2480.0149
SER 2490.0157
ILE 2500.0133
ARG 2510.0138
ASN 2520.0118
LEU 2530.0091
SER 2540.0073
LEU 2550.0046
SER 2560.0041
ASN 2570.0030
SER 2580.0013
GLN 2590.0009
LEU 2600.0007
SER 2610.0009
THR 2620.0013
THR 2630.0022
SER 2640.0038
ASN 2650.0054
THR 2660.0084
THR 2670.0067
PHE 2680.0079
LEU 2690.0103
GLY 2700.0118
LEU 2710.0116
LYS 2720.0138
TRP 2730.0154
THR 2740.0144
ASN 2750.0154
LEU 2760.0115
THR 2770.0116
MET 2780.0100
LEU 2790.0076
ASP 2800.0064
LEU 2810.0033
SER 2820.0037
TYR 2830.0033
ASN 2840.0020
ASN 2850.0023
LEU 2860.0025
ASN 2870.0025
VAL 2880.0016
VAL 2890.0015
GLY 2900.0011
ASN 2910.0020
ASP 2920.0032
SER 2930.0037
PHE 2940.0048
ALA 2950.0053
TRP 2960.0080
LEU 2970.0082
PRO 2980.0094
GLN 2990.0105
LEU 3000.0091
GLU 3010.0080
TYR 3020.0076
PHE 3030.0057
PHE 3040.0051
LEU 3050.0036
GLU 3060.0039
TYR 3070.0037
ASN 3080.0032
ASN 3090.0034
ILE 3100.0034
GLN 3110.0038
HIS 3120.0039
LEU 3130.0039
PHE 3140.0036
SER 3150.0038
HIS 3160.0026
SER 3170.0027
LEU 3180.0036
HIS 3190.0034
GLY 3200.0043
LEU 3210.0043
PHE 3220.0047
ASN 3230.0057
VAL 3240.0057
ARG 3250.0067
TYR 3260.0060
LEU 3270.0046
ASN 3280.0041
LEU 3290.0035
LYS 3300.0039
ARG 3310.0040
SER 3320.0037
PHE 3330.0038
THR 3340.0038
LYS 3350.0041
GLN 3360.0036
SER 3370.0042
ILE 3380.0044
SER 3390.0054
LEU 3400.0060
ALA 3410.0045
SER 3420.0047
LEU 3430.0041
PRO 3440.0044
LYS 3450.0046
ILE 3460.0048
ASP 3470.0054
ASP 3480.0062
PHE 3490.0061
SER 3500.0051
PHE 3510.0048
GLN 3520.0054
TRP 3530.0046
LEU 3540.0049
LYS 3550.0058
CYS 3560.0054
LEU 3570.0050
GLU 3580.0059
HIS 3590.0052
LEU 3600.0043
ASN 3610.0029
MET 3620.0028
GLU 3630.0023
ASP 3640.0020
ASN 3650.0024
ASP 3660.0032
ILE 3670.0039
PRO 3680.0048
GLY 3690.0048
ILE 3700.0050
LYS 3710.0065
SER 3720.0074
ASN 3730.0074
MET 3740.0060
PHE 3750.0059
THR 3760.0070
GLY 3770.0074
LEU 3780.0066
ILE 3790.0079
ASN 3800.0075
LEU 3810.0066
LYS 3820.0067
TYR 3830.0052
LEU 3840.0037
SER 3850.0023
LEU 3860.0017
SER 3870.0017
ASN 3880.0018
SER 3890.0010
PHE 3900.0025
THR 3910.0043
SER 3920.0056
LEU 3930.0047
ARG 3940.0067
THR 3950.0065
LEU 3960.0042
THR 3970.0055
ASN 3980.0057
GLU 3990.0068
THR 4000.0049
PHE 4010.0045
VAL 4020.0070
SER 4030.0071
LEU 4040.0062
ALA 4050.0079
HIS 4060.0093
SER 4070.0080
PRO 4080.0088
LEU 4090.0067
HIS 4100.0073
ILE 4110.0060
LEU 4120.0040
ASN 4130.0042
LEU 4140.0030
THR 4150.0053
LYS 4160.0065
ASN 4170.0049
LYS 4180.0070
ILE 4190.0059
SER 4200.0077
LYS 4210.0067
ILE 4220.0045
GLU 4230.0047
SER 4240.0037
ASP 4250.0028
ALA 4260.0027
PHE 4270.0018
SER 4280.0042
TRP 4290.0055
LEU 4300.0052
GLY 4310.0063
HIS 4320.0078
LEU 4330.0062
GLU 4340.0082
VAL 4350.0079
LEU 4360.0064
ASP 4370.0077
LEU 4380.0070
GLY 4390.0095
LEU 4400.0111
ASN 4410.0098
GLU 4420.0105
ILE 4430.0091
GLY 4440.0101
GLN 4450.0087
GLU 4460.0077
LEU 4470.0061
THR 4480.0047
GLY 4490.0036
GLN 4500.0023
GLU 4510.0027
TRP 4520.0028
ARG 4530.0018
GLY 4540.0036
LEU 4550.0047
GLU 4560.0058
ASN 4570.0075
ILE 4580.0073
PHE 4590.0095
GLU 4600.0097
ILE 4610.0091
TYR 4620.0108
LEU 4630.0104
SER 4640.0128
TYR 4650.0143
ASN 4660.0121
LYS 4670.0129
TYR 4680.0117
LEU 4690.0097
GLN 4700.0087
LEU 4710.0076
THR 4720.0063
ARG 4730.0050
ASN 4740.0048
SER 4750.0060
PHE 4760.0058
ALA 4770.0043
LEU 4780.0042
VAL 4790.0057
PRO 4800.0060
SER 4810.0082
LEU 4820.0089
GLN 4830.0103
ARG 4840.0111
LEU 4850.0106
MET 4860.0119
LEU 4870.0117
ARG 4880.0135
ARG 4890.0145
VAL 4900.0132
ALA 4910.0132
LEU 4920.0111
LYS 4930.0102
ASN 4940.0084
VAL 4950.0084
ASP 4960.0065
SER 4970.0063
SER 4980.0051
PRO 4990.0044
SER 5000.0052
PRO 5010.0064
PHE 5020.0067
GLN 5030.0052
PRO 5040.0055
LEU 5050.0070
ARG 5060.0066
ASN 5070.0086
LEU 5080.0087
THR 5090.0097
ILE 5100.0104
LEU 5110.0095
ASP 5120.0107
LEU 5130.0103
SER 5140.0115
ASN 5150.0129
ASN 5160.0124
ASN 5170.0109
ILE 5180.0097
ALA 5190.0092
ASN 5200.0084
ILE 5210.0062
ASN 5220.0049
ASP 5230.0028
ASP 5240.0022
MET 5250.0041
LEU 5260.0039
GLU 5270.0027
GLY 5280.0042
LEU 5290.0055
GLU 5300.0061
LYS 5310.0076
LEU 5320.0068
GLU 5330.0076
ILE 5340.0078
LEU 5350.0067
ASP 5360.0071
LEU 5370.0063
GLN 5380.0072
HIS 5390.0087
ASN 5400.0086
ASN 5410.0088
LEU 5420.0067
ALA 5430.0071
ARG 5440.0095
LEU 5450.0077
TRP 5460.0072
LYS 5470.0101
HIS 5480.0121
ALA 5490.0145
ASN 5500.0131
PRO 5510.0163
GLY 5520.0146
GLY 5530.0125
PRO 5540.0087
ILE 5550.0057
TYR 5560.0035
PHE 5570.0019
LEU 5580.0008
LYS 5590.0024
GLY 5600.0040
LEU 5610.0040
SER 5620.0056
HIS 5630.0064
LEU 5640.0045
HIS 5650.0046
ILE 5660.0039
LEU 5670.0024
ASN 5680.0028
LEU 5690.0023
GLU 5700.0031
SER 5710.0047
ASN 5720.0051
GLY 5730.0060
PHE 5740.0051
ASP 5750.0070
GLU 5760.0073
ILE 5770.0061
PRO 5780.0070
VAL 5790.0077
GLU 5800.0065
VAL 5810.0042
PHE 5820.0042
LYS 5830.0056
ASP 5840.0054
LEU 5850.0046
PHE 5860.0057
GLU 5870.0055
LEU 5880.0041
LYS 5890.0042
ILE 5900.0033
ILE 5910.0028
ASP 5920.0019
LEU 5930.0026
GLY 5940.0021
LEU 5950.0024
ASN 5960.0034
ASN 5970.0041
LEU 5980.0045
ASN 5990.0050
THR 6000.0059
LEU 6010.0062
PRO 6020.0067
ALA 6030.0070
SER 6040.0068
VAL 6050.0062
PHE 6060.0059
ASN 6070.0067
ASN 6080.0060
GLN 6090.0054
VAL 6100.0062
SER 6110.0055
LEU 6120.0050
LYS 6130.0050
SER 6140.0054
LEU 6150.0055
ASN 6160.0057
LEU 6170.0053
GLN 6180.0060
LYS 6190.0062
ASN 6200.0055
LEU 6210.0052
ILE 6220.0039
THR 6230.0032
SER 6240.0018
VAL 6250.0020
GLU 6260.0025
LYS 6270.0034
LYS 6280.0031
VAL 6290.0045
PHE 6300.0052
GLY 6310.0055
PRO 6320.0051
ALA 6330.0056
PHE 6340.0064
ARG 6350.0063
ASN 6360.0066
LEU 6370.0071
THR 6380.0086
GLU 6390.0088
LEU 6400.0080
ASP 6410.0085
MET 6420.0066
ARG 6430.0079
PHE 6440.0082
ASN 6450.0063
PRO 6460.0076
PHE 6470.0039
ASP 6480.0055
CYS 6490.0059
THR 6500.0090
CYS 6510.0106
GLU 6520.0097
SER 6530.0054
ILE 6540.0038
ALA 6550.0083
TRP 6560.0063
PHE 6570.0049
VAL 6580.0065
ASN 6590.0092
TRP 6600.0090
ILE 6610.0088
ASN 6620.0106
GLU 6630.0127
THR 6640.0129
HIS 6650.0149
THR 6660.0125
ASN 6670.0134
ILE 6680.0111
PRO 6690.0126
GLU 6700.0114
LEU 6710.0094
SER 6720.0084
SER 6730.0097
HIS 6740.0093
TYR 6750.0061
LEU 6760.0060
CYS 6770.0057
ASN 6780.0103
THR 6790.0117
PRO 6800.0138
PRO 6810.0181
HIS 6820.0165
TYR 6830.0111
HIS 6840.0127
GLY 6850.0105
PHE 6860.0049
PRO 6870.0024
VAL 6880.0008
ARG 6890.0050
LEU 6900.0043
PHE 6910.0061
ASP 6920.0125
THR 6930.0158
SER 6940.0218
SER 6950.0226
CYS 6960.0220
GLU 10.0099
ALA 20.0086
ALA 30.0065
ALA 40.0062
LYS 50.0066
MET 60.0051
GLN 70.0043
ARG 80.0044
LEU 90.0052
VAL 100.0049
LEU 110.0048
LEU 120.0046
LEU 130.0047
ALA 140.0049
ILE 150.0048
SER 160.0048
LEU 170.0037
LEU 180.0045
LEU 190.0054
TYR 200.0048
GLN 210.0055
ASP 220.0067
LEU 230.0144
PRO 240.0178
VAL 250.0199
ARG 260.0259
SER 270.0176
GLU 280.0208
PHE 290.0152
GLU 300.0089
LEU 310.0133
ASP 320.0138
ARG 330.0062
ILE 340.0125
CYS 350.0181
GLY 360.0346
TYR 370.0476
GLY 380.0358
THR 390.0364
ALA 400.0168
ARG 410.0075
CYS 420.0045
ARG 430.0011
LYS 440.0050
LYS 450.0042
CYS 460.0045
ARG 470.0089
SER 480.0117
GLN 490.0121
GLU 500.0076
TYR 510.0029
ARG 520.0020
ILE 530.0067
GLY 540.0085
ARG 550.0089
CYS 560.0087
PRO 570.0117
ASN 580.0109
THR 590.0099
TYR 600.0068
ALA 610.0053
CYS 620.0056
CYS 630.0041
LEU 640.0088
ARG 650.0121
LYS 660.0150
TRP 670.0132
ASP 680.0078
GLU 690.0038
SER 700.0042
LEU 710.0130
LEU 720.0170
ASN 730.0157
ARG 740.0167
THR 750.0234
LYS 760.0245
PRO 770.0204
GLU 780.0218
ALA 790.0190
ALA 800.0157
ALA 810.0174
LYS 820.0145
LYS 830.0121
GLU 840.0134
MET 850.0094
ASN 860.0103
LEU 870.0070
SER 880.0091
VAL 890.0093
GLY 900.0139
LEU 910.0178
GLY 920.0282
GLY 930.0355
GLY 940.0305
SER 950.0210
ASN 960.0130
LEU 970.0080
SER 980.0067
VAL 990.0053
GLY 1000.0103
LEU 1010.0105
GLY 1020.0136
GLU 1030.0137
ILE 1040.0159
GLY 1050.0176
GLY 1060.0174
GLY 1070.0142
SER 1080.0118
LYS 1090.0086
LEU 1100.0092
LEU 1110.0132
ASP 1120.0132
ILE 1130.0104
ASN 1140.0153
LEU 1150.0150
GLY 1160.0261
ARG 1170.0367
GLY 1180.0232
GLY 1190.0306
GLY 1200.0383
SER 1210.0173
MET 1220.0119
VAL 1230.0120
ASP 1240.0084
LEU 1250.0083
THR 1260.0074
PHE 1270.0098
GLY 1280.0107
GLY 1290.0115
VAL 1300.0144
GLY 1310.0183
GLY 1320.0190
GLY 1330.0157
SER 1340.0172
THR 1350.0150
PHE 1360.0163
THR 1370.0179
PHE 1380.0157
PHE 1390.0188
PRO 1400.0182
LEU 1410.0222
VAL 1420.0289
ILE 1430.0288
GLY 1440.0378
GLY 1450.0389
GLY 1460.0197
SER 1470.0109
ASP 1480.0113
ALA 1490.0096
MET 1500.0098
TYR 1510.0111
LEU 1520.0130
GLY 1530.0159
PHE 1540.0186
ALA 1550.0221
ALA 1560.0252
GLY 1570.0208
GLY 1580.0171
GLY 1590.0114
SER 1600.0082
ALA 1610.0053
GLY 1620.0053
GLY 1630.0031
GLU 1640.0018
ASN 1650.0037
HIS 1660.0045
VAL 1670.0087
ALA 1680.0083
PHE 1690.0116
GLY 1700.0118
PRO 1710.0277
GLY 1720.0390
PRO 1730.0484
GLY 1740.0388
VAL 1750.0233
ASP 1760.0170
LEU 1770.0132
THR 1780.0111
PHE 1790.0076
GLY 1800.0082
GLY 1810.0128
VAL 1820.0143
GLN 1830.0158
PHE 1840.0164
ALA 1850.0195
MET 1860.0186
VAL 1870.0306
ASN 1880.0217
ASN 1890.0465
GLY 1900.0408
PRO 1910.0561
GLY 1920.0500
PRO 1930.0251
GLY 1940.0315
GLU 1950.0247
SER 1960.0238
PHE 1970.0153
THR 1980.0114
ALA 1990.0052
GLN 2000.0082
PRO 2010.0061
ALA 2020.0093
ASP 2030.0110
MET 2040.0089
GLN 2050.0104
ALA 2060.0098
GLY 2070.0140
ILE 2080.0082
LYS 2090.0061
GLY 2100.0188
PRO 2110.0211
GLY 2120.0123
PRO 2130.0131
GLY 2140.0166
GLY 2150.0246
SER 2160.0300
ILE 2170.0172
GLN 2180.0087
VAL 2190.0087
ILE 2200.0251
ASN 2210.0133
GLY 2220.0123
SER 2230.0123
THR 2240.0136
ILE 2250.0169
GLY 2260.0179
THR 2270.0177
GLY 2280.0132
SER 2290.0205
LYS 2300.0142
LYS 2310.0105
THR 2320.0102
ILE 2330.0079
LEU 2340.0157
ILE 2350.0145
TYR 2360.0122
SER 2370.0075
ILE 2380.0008
ILE 2390.0045
GLY 2400.0093
VAL 2410.0154
LYS 2420.0169
LYS 2430.0177
GLY 2440.0182
THR 2450.0179
LEU 2460.0129
ALA 2470.0044
TRP 2480.0093
ALA 2490.0124
ARG 2500.0213
THR 2510.0272
GLY 2520.0212
PHE 2530.0135
SER 2540.0093
PRO 2550.0108
ALA 2560.0204
LYS 2570.0238
LYS 2580.0048
LEU 2590.0258
ASN 2600.0364
ALA 2610.0425
GLY 2620.0301
VAL 2630.0258
VAL 2640.0206
ARG 2650.0098
VAL 2660.0122
PHE 2670.0089
PHE 2680.0090
LEU 2690.0055
ASN 2700.0051
GLN 2710.0033
LYS 2720.0029
LYS 2730.0034
ALA 2740.0038
LYS 2750.0054
ASP 2760.0071
VAL 2770.0053
LEU 2780.0041
ARG 2790.0053
LYS 2800.0061
THR 2810.0048
SER 2820.0064
ARG 2830.0095
PRO 2840.0126
MET 2850.0155
VAL 2860.0135
ASP 2870.0084
LEU 2880.0091
THR 2890.0236
PHE 2900.0270
GLY 2910.0177
GLY 2920.0460

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elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.