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***  TLR_3_simulation  ***

<R2> analysis for 2608260340483950756

---  normal mode 64  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0725
THR 260.0052
LYS 270.0045
CYS 280.0043
THR 290.0043
VAL 300.0040
SER 310.0041
HIS 320.0047
GLU 330.0034
VAL 340.0039
ALA 350.0031
ASP 360.0047
CYS 370.0048
SER 380.0062
HIS 390.0073
LEU 400.0066
LYS 410.0088
LEU 420.0077
THR 430.0092
GLN 440.0081
VAL 450.0062
PRO 460.0061
ASP 470.0069
ASP 480.0063
LEU 490.0046
PRO 500.0053
THR 510.0056
ASN 520.0053
ILE 530.0033
THR 540.0033
VAL 550.0028
LEU 560.0025
ASN 570.0038
LEU 580.0044
THR 590.0060
HIS 600.0075
ASN 610.0077
GLN 620.0091
LEU 630.0079
ARG 640.0092
ARG 650.0080
LEU 660.0074
PRO 670.0084
ALA 680.0077
ALA 690.0088
ASN 700.0075
PHE 710.0061
THR 720.0075
ARG 730.0071
TYR 740.0050
SER 750.0054
GLN 760.0044
LEU 770.0024
THR 780.0018
SER 790.0016
LEU 800.0021
ASP 810.0033
VAL 820.0044
GLY 830.0057
PHE 840.0072
ASN 850.0074
THR 860.0082
ILE 870.0075
SER 880.0081
LYS 890.0075
LEU 900.0063
GLU 910.0073
PRO 920.0063
GLU 930.0064
LEU 940.0053
CYS 950.0040
GLN 960.0052
LYS 970.0054
LEU 980.0035
PRO 990.0030
MET 1000.0020
LEU 1010.0010
LYS 1020.0017
VAL 1030.0024
LEU 1040.0031
ASN 1050.0039
LEU 1060.0047
GLN 1070.0054
HIS 1080.0063
ASN 1090.0064
GLU 1100.0071
LEU 1110.0053
SER 1120.0055
GLN 1130.0055
LEU 1140.0054
SER 1150.0054
ASP 1160.0060
LYS 1170.0054
THR 1180.0052
PHE 1190.0046
ALA 1200.0045
PHE 1210.0039
CYS 1220.0034
THR 1230.0032
ASN 1240.0027
LEU 1250.0034
THR 1260.0043
GLU 1270.0042
LEU 1280.0042
HIS 1290.0042
LEU 1300.0046
MET 1310.0046
SER 1320.0046
ASN 1330.0046
SER 1340.0045
ILE 1350.0044
GLN 1360.0025
LYS 1370.0036
ILE 1380.0043
LYS 1390.0053
ASN 1400.0062
ASN 1410.0063
PRO 1420.0055
PHE 1430.0055
VAL 1440.0061
LYS 1450.0056
GLN 1460.0056
LYS 1470.0064
ASN 1480.0060
LEU 1490.0055
ILE 1500.0058
THR 1510.0050
LEU 1520.0046
ASP 1530.0040
LEU 1540.0037
SER 1550.0033
HIS 1560.0029
ASN 1570.0026
GLY 1580.0020
LEU 1590.0023
SER 1600.0017
SER 1610.0026
THR 1620.0033
LYS 1630.0043
LEU 1640.0049
GLY 1650.0061
THR 1660.0074
GLN 1670.0079
VAL 1680.0079
GLN 1690.0072
LEU 1700.0067
GLU 1710.0079
ASN 1720.0077
LEU 1730.0065
GLN 1740.0066
GLU 1750.0054
LEU 1760.0043
LEU 1770.0036
LEU 1780.0028
SER 1790.0024
ASN 1800.0017
ASN 1810.0016
LYS 1820.0012
ILE 1830.0011
GLN 1840.0016
ALA 1850.0014
LEU 1860.0016
LYS 1870.0022
SER 1880.0033
GLU 1890.0044
GLU 1900.0039
LEU 1910.0044
ASP 1920.0056
ILE 1930.0062
PHE 1940.0062
ALA 1950.0070
ASN 1960.0080
SER 1970.0071
SER 1980.0073
LEU 1990.0061
LYS 2000.0065
LYS 2010.0052
LEU 2020.0043
GLU 2030.0037
LEU 2040.0029
SER 2050.0031
SER 2060.0032
ASN 2070.0026
GLN 2080.0033
ILE 2090.0029
LYS 2100.0035
GLU 2110.0033
PHE 2120.0029
SER 2130.0022
PRO 2140.0025
GLY 2150.0031
CYS 2160.0032
PHE 2170.0035
HIS 2180.0041
ALA 2190.0045
ILE 2200.0051
GLY 2210.0059
ARG 2220.0060
LEU 2230.0052
PHE 2240.0060
GLY 2250.0054
LEU 2260.0047
PHE 2270.0046
LEU 2280.0045
ASN 2290.0050
ASN 2300.0051
VAL 2310.0050
GLN 2320.0053
LEU 2330.0054
GLY 2340.0058
PRO 2350.0059
SER 2360.0058
LEU 2370.0055
THR 2380.0056
GLU 2390.0056
LYS 2400.0051
LEU 2410.0048
CYS 2420.0051
LEU 2430.0047
GLU 2440.0043
LEU 2450.0047
ALA 2460.0046
ASN 2470.0047
THR 2480.0049
SER 2490.0054
ILE 2500.0052
ARG 2510.0057
ASN 2520.0056
LEU 2530.0053
SER 2540.0054
LEU 2550.0054
SER 2560.0058
ASN 2570.0057
SER 2580.0058
GLN 2590.0057
LEU 2600.0057
SER 2610.0055
THR 2620.0056
THR 2630.0056
SER 2640.0057
ASN 2650.0058
THR 2660.0059
THR 2670.0058
PHE 2680.0055
LEU 2690.0054
GLY 2700.0051
LEU 2710.0049
LYS 2720.0050
TRP 2730.0049
THR 2740.0048
ASN 2750.0048
LEU 2760.0055
THR 2770.0054
MET 2780.0054
LEU 2790.0056
ASP 2800.0056
LEU 2810.0057
SER 2820.0056
TYR 2830.0055
ASN 2840.0054
ASN 2850.0054
LEU 2860.0047
ASN 2870.0053
VAL 2880.0055
VAL 2890.0050
GLY 2900.0055
ASN 2910.0053
ASP 2920.0056
SER 2930.0055
PHE 2940.0054
ALA 2950.0058
TRP 2960.0055
LEU 2970.0053
PRO 2980.0053
GLN 2990.0053
LEU 3000.0051
GLU 3010.0053
TYR 3020.0052
PHE 3030.0051
PHE 3040.0050
LEU 3050.0048
GLU 3060.0052
TYR 3070.0049
ASN 3080.0045
ASN 3090.0042
ILE 3100.0046
GLN 3110.0055
HIS 3120.0054
LEU 3130.0049
PHE 3140.0050
SER 3150.0047
HIS 3160.0052
SER 3170.0049
LEU 3180.0046
HIS 3190.0052
GLY 3200.0055
LEU 3210.0050
PHE 3220.0052
ASN 3230.0052
VAL 3240.0044
ARG 3250.0038
TYR 3260.0040
LEU 3270.0038
ASN 3280.0037
LEU 3290.0034
LYS 3300.0033
ARG 3310.0041
SER 3320.0038
PHE 3330.0038
THR 3340.0043
LYS 3350.0048
GLN 3360.0112
SER 3370.0150
ILE 3380.0214
SER 3390.0260
LEU 3400.0246
ALA 3410.0160
SER 3420.0124
LEU 3430.0091
PRO 3440.0047
LYS 3450.0044
ILE 3460.0040
ASP 3470.0046
ASP 3480.0048
PHE 3490.0048
SER 3500.0045
PHE 3510.0038
GLN 3520.0046
TRP 3530.0050
LEU 3540.0043
LYS 3550.0045
CYS 3560.0041
LEU 3570.0031
GLU 3580.0019
HIS 3590.0014
LEU 3600.0014
ASN 3610.0015
MET 3620.0016
GLU 3630.0012
ASP 3640.0013
ASN 3650.0015
ASP 3660.0036
ILE 3670.0033
PRO 3680.0036
GLY 3690.0035
ILE 3700.0037
LYS 3710.0038
SER 3720.0043
ASN 3730.0043
MET 3740.0037
PHE 3750.0034
THR 3760.0042
GLY 3770.0048
LEU 3780.0037
ILE 3790.0044
ASN 3800.0034
LEU 3810.0025
LYS 3820.0024
TYR 3830.0023
LEU 3840.0021
SER 3850.0023
LEU 3860.0024
SER 3870.0023
ASN 3880.0021
SER 3890.0021
PHE 3900.0023
THR 3910.0022
SER 3920.0026
LEU 3930.0036
ARG 3940.0042
THR 3950.0046
LEU 3960.0043
THR 3970.0042
ASN 3980.0046
GLU 3990.0042
THR 4000.0040
PHE 4010.0038
VAL 4020.0042
SER 4030.0039
LEU 4040.0039
ALA 4050.0048
HIS 4060.0053
SER 4070.0040
PRO 4080.0047
LEU 4090.0044
HIS 4100.0057
ILE 4110.0061
LEU 4120.0055
ASN 4130.0057
LEU 4140.0052
THR 4150.0056
LYS 4160.0058
ASN 4170.0048
LYS 4180.0051
ILE 4190.0050
SER 4200.0052
LYS 4210.0051
ILE 4220.0049
GLU 4230.0043
SER 4240.0043
ASP 4250.0045
ALA 4260.0045
PHE 4270.0051
SER 4280.0055
TRP 4290.0048
LEU 4300.0053
GLY 4310.0068
HIS 4320.0072
LEU 4330.0073
GLU 4340.0088
VAL 4350.0090
LEU 4360.0082
ASP 4370.0085
LEU 4380.0075
GLY 4390.0082
LEU 4400.0088
ASN 4410.0079
GLU 4420.0073
ILE 4430.0065
GLY 4440.0060
GLN 4450.0051
GLU 4460.0037
LEU 4470.0040
THR 4480.0033
GLY 4490.0044
GLN 4500.0039
GLU 4510.0044
TRP 4520.0056
ARG 4530.0055
GLY 4540.0060
LEU 4550.0070
GLU 4560.0088
ASN 4570.0097
ILE 4580.0096
PHE 4590.0113
GLU 4600.0110
ILE 4610.0098
TYR 4620.0102
LEU 4630.0086
SER 4640.0097
TYR 4650.0103
ASN 4660.0087
LYS 4670.0081
TYR 4680.0065
LEU 4690.0053
GLN 4700.0038
LEU 4710.0024
THR 4720.0018
ARG 4730.0035
ASN 4740.0045
SER 4750.0042
PHE 4760.0059
ALA 4770.0067
LEU 4780.0066
VAL 4790.0081
PRO 4800.0099
SER 4810.0119
LEU 4820.0111
GLN 4830.0125
ARG 4840.0119
LEU 4850.0100
MET 4860.0101
LEU 4870.0083
ARG 4880.0096
ARG 4890.0097
VAL 4900.0081
ALA 4910.0072
LEU 4920.0051
LYS 4930.0033
ASN 4940.0011
VAL 4950.0014
ASP 4960.0021
SER 4970.0034
SER 4980.0060
PRO 4990.0068
SER 5000.0052
PRO 5010.0048
PHE 5020.0064
GLN 5030.0080
PRO 5040.0099
LEU 5050.0102
ARG 5060.0135
ASN 5070.0148
LEU 5080.0120
THR 5090.0131
ILE 5100.0116
LEU 5110.0091
ASP 5120.0089
LEU 5130.0067
SER 5140.0079
ASN 5150.0086
ASN 5160.0069
ASN 5170.0064
ILE 5180.0038
ALA 5190.0039
ASN 5200.0027
ILE 5210.0019
ASN 5220.0045
ASP 5230.0059
ASP 5240.0072
MET 5250.0054
LEU 5260.0071
GLU 5270.0095
GLY 5280.0119
LEU 5290.0110
GLU 5300.0126
LYS 5310.0142
LEU 5320.0116
GLU 5330.0121
ILE 5340.0107
LEU 5350.0078
ASP 5360.0069
LEU 5370.0048
GLN 5380.0060
HIS 5390.0067
ASN 5400.0049
ASN 5410.0047
LEU 5420.0027
ALA 5430.0045
ARG 5440.0060
LEU 5450.0047
TRP 5460.0048
LYS 5470.0074
HIS 5480.0094
ALA 5490.0112
ASN 5500.0098
PRO 5510.0123
GLY 5520.0124
GLY 5530.0107
PRO 5540.0075
ILE 5550.0059
TYR 5560.0060
PHE 5570.0054
LEU 5580.0053
LYS 5590.0076
GLY 5600.0096
LEU 5610.0088
SER 5620.0096
HIS 5630.0099
LEU 5640.0081
HIS 5650.0077
ILE 5660.0065
LEU 5670.0046
ASN 5680.0042
LEU 5690.0026
GLU 5700.0039
SER 5710.0049
ASN 5720.0036
GLY 5730.0045
PHE 5740.0033
ASP 5750.0046
GLU 5760.0050
ILE 5770.0041
PRO 5780.0055
VAL 5790.0060
GLU 5800.0064
VAL 5810.0049
PHE 5820.0044
LYS 5830.0064
ASP 5840.0072
LEU 5850.0056
PHE 5860.0055
GLU 5870.0051
LEU 5880.0038
LYS 5890.0029
ILE 5900.0027
ILE 5910.0013
ASP 5920.0010
LEU 5930.0010
GLY 5940.0016
LEU 5950.0022
ASN 5960.0024
ASN 5970.0022
LEU 5980.0020
ASN 5990.0018
THR 6000.0017
LEU 6010.0041
PRO 6020.0051
ALA 6030.0053
SER 6040.0045
VAL 6050.0036
PHE 6060.0040
ASN 6070.0054
ASN 6080.0048
GLN 6090.0030
VAL 6100.0031
SER 6110.0028
LEU 6120.0027
LYS 6130.0028
SER 6140.0027
LEU 6150.0027
ASN 6160.0034
LEU 6170.0026
GLN 6180.0031
LYS 6190.0032
ASN 6200.0024
LEU 6210.0036
ILE 6220.0028
THR 6230.0031
SER 6240.0026
VAL 6250.0032
GLU 6260.0052
LYS 6270.0060
LYS 6280.0063
VAL 6290.0047
PHE 6300.0046
GLY 6310.0065
PRO 6320.0061
ALA 6330.0049
PHE 6340.0059
ARG 6350.0072
ASN 6360.0073
LEU 6370.0067
THR 6380.0075
GLU 6390.0068
LEU 6400.0057
ASP 6410.0064
MET 6420.0048
ARG 6430.0063
PHE 6440.0067
ASN 6450.0050
PRO 6460.0074
PHE 6470.0051
ASP 6480.0058
CYS 6490.0052
THR 6500.0064
CYS 6510.0076
GLU 6520.0091
SER 6530.0063
ILE 6540.0040
ALA 6550.0059
TRP 6560.0068
PHE 6570.0054
VAL 6580.0059
ASN 6590.0080
TRP 6600.0084
ILE 6610.0087
ASN 6620.0097
GLU 6630.0105
THR 6640.0102
HIS 6650.0109
THR 6660.0102
ASN 6670.0109
ILE 6680.0091
PRO 6690.0108
GLU 6700.0105
LEU 6710.0106
SER 6720.0115
SER 6730.0125
HIS 6740.0105
TYR 6750.0078
LEU 6760.0098
CYS 6770.0083
ASN 6780.0111
THR 6790.0113
PRO 6800.0122
PRO 6810.0167
HIS 6820.0144
TYR 6830.0112
HIS 6840.0145
GLY 6850.0150
PHE 6860.0106
PRO 6870.0093
VAL 6880.0058
ARG 6890.0074
LEU 6900.0068
PHE 6910.0041
ASP 6920.0042
THR 6930.0075
SER 6940.0103
SER 6950.0108
CYS 6960.0126
GLU 10.0491
ALA 20.0394
ALA 30.0329
ALA 40.0299
LYS 50.0236
MET 60.0156
GLN 70.0138
ARG 80.0098
LEU 90.0080
VAL 100.0062
LEU 110.0057
LEU 120.0045
LEU 130.0046
ALA 140.0061
ILE 150.0061
SER 160.0067
LEU 170.0080
LEU 180.0081
LEU 190.0084
TYR 200.0097
GLN 210.0106
ASP 220.0112
LEU 230.0108
PRO 240.0112
VAL 250.0107
ARG 260.0176
SER 270.0162
GLU 280.0207
PHE 290.0304
GLU 300.0238
LEU 310.0060
ASP 320.0070
ARG 330.0093
ILE 340.0054
CYS 350.0088
GLY 360.0136
TYR 370.0192
GLY 380.0148
THR 390.0116
ALA 400.0026
ARG 410.0018
CYS 420.0037
ARG 430.0043
LYS 440.0063
LYS 450.0053
CYS 460.0056
ARG 470.0057
SER 480.0066
GLN 490.0055
GLU 500.0048
TYR 510.0054
ARG 520.0057
ILE 530.0056
GLY 540.0060
ARG 550.0061
CYS 560.0082
PRO 570.0100
ASN 580.0097
THR 590.0085
TYR 600.0072
ALA 610.0065
CYS 620.0052
CYS 630.0048
LEU 640.0040
ARG 650.0040
LYS 660.0053
TRP 670.0044
ASP 680.0058
GLU 690.0061
SER 700.0075
LEU 710.0058
LEU 720.0039
ASN 730.0043
ARG 740.0053
THR 750.0044
LYS 760.0024
PRO 770.0035
GLU 780.0051
ALA 790.0058
ALA 800.0065
ALA 810.0138
LYS 820.0134
LYS 830.0114
GLU 840.0111
MET 850.0093
ASN 860.0085
LEU 870.0063
SER 880.0072
VAL 890.0068
GLY 900.0093
LEU 910.0104
GLY 920.0174
GLY 930.0220
GLY 940.0240
SER 950.0180
ASN 960.0115
LEU 970.0099
SER 980.0102
VAL 990.0101
GLY 1000.0116
LEU 1010.0090
GLY 1020.0067
GLU 1030.0073
ILE 1040.0070
GLY 1050.0119
GLY 1060.0175
GLY 1070.0120
SER 1080.0075
LYS 1090.0027
LEU 1100.0031
LEU 1110.0039
ASP 1120.0095
ILE 1130.0096
ASN 1140.0165
LEU 1150.0170
GLY 1160.0314
ARG 1170.0411
GLY 1180.0238
GLY 1190.0259
GLY 1200.0316
SER 1210.0151
MET 1220.0119
VAL 1230.0096
ASP 1240.0071
LEU 1250.0042
THR 1260.0037
PHE 1270.0042
GLY 1280.0059
GLY 1290.0064
VAL 1300.0075
GLY 1310.0068
GLY 1320.0040
GLY 1330.0039
SER 1340.0020
THR 1350.0036
PHE 1360.0011
THR 1370.0025
PHE 1380.0028
PHE 1390.0042
PRO 1400.0047
LEU 1410.0060
VAL 1420.0102
ILE 1430.0146
GLY 1440.0198
GLY 1450.0246
GLY 1460.0151
SER 1470.0123
ASP 1480.0172
ALA 1490.0110
MET 1500.0105
TYR 1510.0021
LEU 1520.0013
GLY 1530.0014
PHE 1540.0024
ALA 1550.0034
ALA 1560.0030
GLY 1570.0048
GLY 1580.0048
GLY 1590.0057
SER 1600.0059
ALA 1610.0102
GLY 1620.0102
GLY 1630.0091
GLU 1640.0069
ASN 1650.0044
HIS 1660.0016
VAL 1670.0019
ALA 1680.0029
PHE 1690.0062
GLY 1700.0065
PRO 1710.0096
GLY 1720.0156
PRO 1730.0225
GLY 1740.0173
VAL 1750.0090
ASP 1760.0063
LEU 1770.0058
THR 1780.0057
PHE 1790.0074
GLY 1800.0097
GLY 1810.0098
VAL 1820.0110
GLN 1830.0092
PHE 1840.0111
ALA 1850.0124
MET 1860.0140
VAL 1870.0128
ASN 1880.0118
ASN 1890.0065
GLY 1900.0180
PRO 1910.0364
GLY 1920.0166
PRO 1930.0148
GLY 1940.0165
GLU 1950.0150
SER 1960.0087
PHE 1970.0127
THR 1980.0189
ALA 1990.0276
GLN 2000.0160
PRO 2010.0079
ALA 2020.0127
ASP 2030.0124
MET 2040.0308
GLN 2050.0433
ALA 2060.0185
GLY 2070.0359
ILE 2080.0392
LYS 2090.0371
GLY 2100.0422
PRO 2110.0725
GLY 2120.0511
PRO 2130.0213
GLY 2140.0105
GLY 2150.0339
SER 2160.0290
ILE 2170.0514
GLN 2180.0223
VAL 2190.0355
ILE 2200.0323
ASN 2210.0152
GLY 2220.0166
SER 2230.0209
THR 2240.0275
ILE 2250.0309
GLY 2260.0289
THR 2270.0206
GLY 2280.0097
SER 2290.0113
LYS 2300.0124
LYS 2310.0113
THR 2320.0161
ILE 2330.0166
LEU 2340.0204
ILE 2350.0261
TYR 2360.0238
SER 2370.0171
ILE 2380.0150
ILE 2390.0069
GLY 2400.0164
VAL 2410.0289
LYS 2420.0253
LYS 2430.0243
GLY 2440.0153
THR 2450.0121
LEU 2460.0102
ALA 2470.0037
TRP 2480.0077
ALA 2490.0088
ARG 2500.0162
THR 2510.0175
GLY 2520.0133
PHE 2530.0094
SER 2540.0045
PRO 2550.0056
ALA 2560.0090
LYS 2570.0125
LYS 2580.0081
LEU 2590.0195
ASN 2600.0237
ALA 2610.0247
GLY 2620.0224
VAL 2630.0191
VAL 2640.0198
ARG 2650.0166
VAL 2660.0166
PHE 2670.0149
PHE 2680.0133
LEU 2690.0155
ASN 2700.0198
GLN 2710.0171
LYS 2720.0110
LYS 2730.0104
ALA 2740.0109
LYS 2750.0072
ASP 2760.0060
VAL 2770.0048
LEU 2780.0149
ARG 2790.0166
LYS 2800.0093
THR 2810.0056
SER 2820.0083
ARG 2830.0079
PRO 2840.0102
MET 2850.0110
VAL 2860.0063
ASP 2870.0073
LEU 2880.0051
THR 2890.0047
PHE 2900.0041
GLY 2910.0050
GLY 2920.0094

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.