CNRS Nantes University US2B US2B
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***  TLR_3_simulation  ***

<R2> analysis for 2608260340483950756

---  normal mode 65  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0444
THR 260.0081
LYS 270.0083
CYS 280.0084
THR 290.0081
VAL 300.0083
SER 310.0089
HIS 320.0087
GLU 330.0074
VAL 340.0075
ALA 350.0072
ASP 360.0075
CYS 370.0077
SER 380.0084
HIS 390.0091
LEU 400.0087
LYS 410.0103
LEU 420.0092
THR 430.0097
GLN 440.0088
VAL 450.0077
PRO 460.0077
ASP 470.0077
ASP 480.0071
LEU 490.0065
PRO 500.0064
THR 510.0062
ASN 520.0060
ILE 530.0055
THR 540.0055
VAL 550.0054
LEU 560.0052
ASN 570.0060
LEU 580.0065
THR 590.0074
HIS 600.0086
ASN 610.0087
GLN 620.0091
LEU 630.0082
ARG 640.0087
ARG 650.0082
LEU 660.0085
PRO 670.0090
ALA 680.0088
ALA 690.0092
ASN 700.0085
PHE 710.0076
THR 720.0081
ARG 730.0076
TYR 740.0067
SER 750.0070
GLN 760.0060
LEU 770.0054
THR 780.0048
SER 790.0044
LEU 800.0048
ASP 810.0057
VAL 820.0062
GLY 830.0063
PHE 840.0069
ASN 850.0073
THR 860.0077
ILE 870.0075
SER 880.0074
LYS 890.0074
LEU 900.0074
GLU 910.0083
PRO 920.0075
GLU 930.0078
LEU 940.0074
CYS 950.0064
GLN 960.0072
LYS 970.0074
LEU 980.0064
PRO 990.0058
MET 1000.0049
LEU 1010.0053
LYS 1020.0051
VAL 1030.0053
LEU 1040.0055
ASN 1050.0058
LEU 1060.0067
GLN 1070.0071
HIS 1080.0075
ASN 1090.0073
GLU 1100.0070
LEU 1110.0067
SER 1120.0069
GLN 1130.0065
LEU 1140.0056
SER 1150.0060
ASP 1160.0066
LYS 1170.0060
THR 1180.0056
PHE 1190.0046
ALA 1200.0047
PHE 1210.0050
CYS 1220.0048
THR 1230.0051
ASN 1240.0054
LEU 1250.0052
THR 1260.0078
GLU 1270.0072
LEU 1280.0057
HIS 1290.0061
LEU 1300.0056
MET 1310.0075
SER 1320.0083
ASN 1330.0072
SER 1340.0077
ILE 1350.0060
GLN 1360.0082
LYS 1370.0075
ILE 1380.0062
LYS 1390.0087
ASN 1400.0098
ASN 1410.0080
PRO 1420.0055
PHE 1430.0051
VAL 1440.0075
LYS 1450.0069
GLN 1460.0068
LYS 1470.0098
ASN 1480.0101
LEU 1490.0083
ILE 1500.0100
THR 1510.0087
LEU 1520.0061
ASP 1530.0063
LEU 1540.0048
SER 1550.0068
HIS 1560.0091
ASN 1570.0077
GLY 1580.0080
LEU 1590.0056
SER 1600.0063
SER 1610.0045
THR 1620.0028
LYS 1630.0057
LEU 1640.0052
GLY 1650.0086
THR 1660.0130
GLN 1670.0137
VAL 1680.0137
GLN 1690.0112
LEU 1700.0099
GLU 1710.0140
ASN 1720.0140
LEU 1730.0111
GLN 1740.0126
GLU 1750.0103
LEU 1760.0072
LEU 1770.0068
LEU 1780.0045
SER 1790.0069
ASN 1800.0083
ASN 1810.0068
LYS 1820.0069
ILE 1830.0044
GLN 1840.0054
ALA 1850.0037
LEU 1860.0028
LYS 1870.0063
SER 1880.0089
GLU 1890.0104
GLU 1900.0073
LEU 1910.0078
ASP 1920.0113
ILE 1930.0108
PHE 1940.0109
ALA 1950.0141
ASN 1960.0162
SER 1970.0138
SER 1980.0151
LEU 1990.0124
LYS 2000.0144
LYS 2010.0114
LEU 2020.0084
GLU 2030.0078
LEU 2040.0052
SER 2050.0072
SER 2060.0078
ASN 2070.0055
GLN 2080.0052
ILE 2090.0026
LYS 2100.0027
GLU 2110.0028
PHE 2120.0026
SER 2130.0052
PRO 2140.0075
GLY 2150.0088
CYS 2160.0073
PHE 2170.0077
HIS 2180.0101
ALA 2190.0108
ILE 2200.0110
GLY 2210.0138
ARG 2220.0139
LEU 2230.0118
PHE 2240.0135
GLY 2250.0117
LEU 2260.0089
PHE 2270.0086
LEU 2280.0072
ASN 2290.0083
ASN 2300.0079
VAL 2310.0065
GLN 2320.0059
LEU 2330.0056
GLY 2340.0053
PRO 2350.0052
SER 2360.0045
LEU 2370.0047
THR 2380.0060
GLU 2390.0058
LYS 2400.0052
LEU 2410.0057
CYS 2420.0068
LEU 2430.0068
GLU 2440.0069
LEU 2450.0080
ALA 2460.0087
ASN 2470.0106
THR 2480.0110
SER 2490.0121
ILE 2500.0106
ARG 2510.0111
ASN 2520.0105
LEU 2530.0091
SER 2540.0086
LEU 2550.0075
SER 2560.0075
ASN 2570.0074
SER 2580.0076
GLN 2590.0070
LEU 2600.0067
SER 2610.0062
THR 2620.0060
THR 2630.0063
SER 2640.0068
ASN 2650.0074
THR 2660.0065
THR 2670.0064
PHE 2680.0065
LEU 2690.0067
GLY 2700.0070
LEU 2710.0070
LYS 2720.0071
TRP 2730.0082
THR 2740.0082
ASN 2750.0084
LEU 2760.0077
THR 2770.0075
MET 2780.0073
LEU 2790.0069
ASP 2800.0068
LEU 2810.0058
SER 2820.0054
TYR 2830.0067
ASN 2840.0074
ASN 2850.0072
LEU 2860.0059
ASN 2870.0052
VAL 2880.0057
VAL 2890.0058
GLY 2900.0070
ASN 2910.0064
ASP 2920.0070
SER 2930.0068
PHE 2940.0061
ALA 2950.0070
TRP 2960.0064
LEU 2970.0061
PRO 2980.0061
GLN 2990.0063
LEU 3000.0055
GLU 3010.0047
TYR 3020.0043
PHE 3030.0040
PHE 3040.0038
LEU 3050.0031
GLU 3060.0027
TYR 3070.0051
ASN 3080.0046
ASN 3090.0044
ILE 3100.0030
GLN 3110.0024
HIS 3120.0039
LEU 3130.0043
PHE 3140.0063
SER 3150.0074
HIS 3160.0070
SER 3170.0056
LEU 3180.0049
HIS 3190.0066
GLY 3200.0070
LEU 3210.0054
PHE 3220.0064
ASN 3230.0057
VAL 3240.0039
ARG 3250.0031
TYR 3260.0024
LEU 3270.0025
ASN 3280.0020
LEU 3290.0022
LYS 3300.0033
ARG 3310.0053
SER 3320.0017
PHE 3330.0019
THR 3340.0028
LYS 3350.0064
GLN 3360.0075
SER 3370.0059
ILE 3380.0119
SER 3390.0098
LEU 3400.0074
ALA 3410.0080
SER 3420.0058
LEU 3430.0063
PRO 3440.0048
LYS 3450.0068
ILE 3460.0062
ASP 3470.0079
ASP 3480.0095
PHE 3490.0094
SER 3500.0075
PHE 3510.0064
GLN 3520.0081
TRP 3530.0077
LEU 3540.0061
LYS 3550.0071
CYS 3560.0062
LEU 3570.0052
GLU 3580.0045
HIS 3590.0036
LEU 3600.0040
ASN 3610.0041
MET 3620.0052
GLU 3630.0055
ASP 3640.0063
ASN 3650.0063
ASP 3660.0071
ILE 3670.0077
PRO 3680.0097
GLY 3690.0104
ILE 3700.0105
LYS 3710.0110
SER 3720.0119
ASN 3730.0111
MET 3740.0094
PHE 3750.0087
THR 3760.0096
GLY 3770.0092
LEU 3780.0077
ILE 3790.0082
ASN 3800.0067
LEU 3810.0062
LYS 3820.0054
TYR 3830.0049
LEU 3840.0057
SER 3850.0056
LEU 3860.0071
SER 3870.0070
ASN 3880.0078
SER 3890.0080
PHE 3900.0090
THR 3910.0098
SER 3920.0094
LEU 3930.0087
ARG 3940.0086
THR 3950.0082
LEU 3960.0090
THR 3970.0092
ASN 3980.0086
GLU 3990.0092
THR 4000.0091
PHE 4010.0090
VAL 4020.0095
SER 4030.0094
LEU 4040.0084
ALA 4050.0083
HIS 4060.0086
SER 4070.0075
PRO 4080.0063
LEU 4090.0059
HIS 4100.0048
ILE 4110.0046
LEU 4120.0053
ASN 4130.0057
LEU 4140.0063
THR 4150.0066
LYS 4160.0083
ASN 4170.0084
LYS 4180.0088
ILE 4190.0072
SER 4200.0072
LYS 4210.0076
ILE 4220.0070
GLU 4230.0070
SER 4240.0066
ASP 4250.0063
ALA 4260.0076
PHE 4270.0066
SER 4280.0061
TRP 4290.0066
LEU 4300.0058
GLY 4310.0042
HIS 4320.0039
LEU 4330.0041
GLU 4340.0033
VAL 4350.0040
LEU 4360.0042
ASP 4370.0050
LEU 4380.0054
GLY 4390.0061
LEU 4400.0070
ASN 4410.0083
GLU 4420.0087
ILE 4430.0075
GLY 4440.0080
GLN 4450.0069
GLU 4460.0085
LEU 4470.0075
THR 4480.0070
GLY 4490.0061
GLN 4500.0056
GLU 4510.0058
TRP 4520.0051
ARG 4530.0039
GLY 4540.0032
LEU 4550.0037
GLU 4560.0025
ASN 4570.0020
ILE 4580.0031
PHE 4590.0028
GLU 4600.0041
ILE 4610.0049
TYR 4620.0052
LEU 4630.0059
SER 4640.0060
TYR 4650.0065
ASN 4660.0083
LYS 4670.0092
TYR 4680.0090
LEU 4690.0080
GLN 4700.0081
LEU 4710.0087
THR 4720.0090
ARG 4730.0085
ASN 4740.0078
SER 4750.0075
PHE 4760.0065
ALA 4770.0061
LEU 4780.0052
VAL 4790.0051
PRO 4800.0051
SER 4810.0053
LEU 4820.0053
GLN 4830.0044
ARG 4840.0047
LEU 4850.0060
MET 4860.0055
LEU 4870.0062
ARG 4880.0057
ARG 4890.0065
VAL 4900.0075
ALA 4910.0085
LEU 4920.0082
LYS 4930.0088
ASN 4940.0088
VAL 4950.0080
ASP 4960.0081
SER 4970.0090
SER 4980.0093
PRO 4990.0089
SER 5000.0080
PRO 5010.0081
PHE 5020.0073
GLN 5030.0075
PRO 5040.0077
LEU 5050.0070
ARG 5060.0075
ASN 5070.0070
LEU 5080.0064
THR 5090.0051
ILE 5100.0052
LEU 5110.0051
ASP 5120.0053
LEU 5130.0053
SER 5140.0051
ASN 5150.0058
ASN 5160.0057
ASN 5170.0051
ILE 5180.0045
ALA 5190.0038
ASN 5200.0037
ILE 5210.0042
ASN 5220.0046
ASP 5230.0043
ASP 5240.0058
MET 5250.0055
LEU 5260.0047
GLU 5270.0056
GLY 5280.0067
LEU 5290.0058
GLU 5300.0054
LYS 5310.0050
LEU 5320.0041
GLU 5330.0032
ILE 5340.0038
LEU 5350.0037
ASP 5360.0039
LEU 5370.0031
GLN 5380.0047
HIS 5390.0057
ASN 5400.0040
ASN 5410.0050
LEU 5420.0036
ALA 5430.0050
ARG 5440.0047
LEU 5450.0034
TRP 5460.0056
LYS 5470.0075
HIS 5480.0086
ALA 5490.0090
ASN 5500.0069
PRO 5510.0073
GLY 5520.0075
GLY 5530.0074
PRO 5540.0053
ILE 5550.0029
TYR 5560.0026
PHE 5570.0013
LEU 5580.0013
LYS 5590.0028
GLY 5600.0038
LEU 5610.0021
SER 5620.0026
HIS 5630.0022
LEU 5640.0015
HIS 5650.0024
ILE 5660.0037
LEU 5670.0033
ASN 5680.0048
LEU 5690.0049
GLU 5700.0068
SER 5710.0082
ASN 5720.0070
GLY 5730.0084
PHE 5740.0078
ASP 5750.0092
GLU 5760.0090
ILE 5770.0076
PRO 5780.0072
VAL 5790.0074
GLU 5800.0059
VAL 5810.0047
PHE 5820.0044
LYS 5830.0047
ASP 5840.0032
LEU 5850.0022
PHE 5860.0026
GLU 5870.0014
LEU 5880.0030
LYS 5890.0040
ILE 5900.0056
ILE 5910.0065
ASP 5920.0076
LEU 5930.0084
GLY 5940.0097
LEU 5950.0107
ASN 5960.0110
ASN 5970.0115
LEU 5980.0108
ASN 5990.0108
THR 6000.0108
LEU 6010.0095
PRO 6020.0095
ALA 6030.0088
SER 6040.0079
VAL 6050.0080
PHE 6060.0075
ASN 6070.0071
ASN 6080.0052
GLN 6090.0053
VAL 6100.0047
SER 6110.0051
LEU 6120.0064
LYS 6130.0068
SER 6140.0080
LEU 6150.0088
ASN 6160.0099
LEU 6170.0102
GLN 6180.0100
LYS 6190.0106
ASN 6200.0111
LEU 6210.0112
ILE 6220.0106
THR 6230.0090
SER 6240.0103
VAL 6250.0103
GLU 6260.0083
LYS 6270.0089
LYS 6280.0101
VAL 6290.0100
PHE 6300.0092
GLY 6310.0085
PRO 6320.0081
ALA 6330.0083
PHE 6340.0085
ARG 6350.0081
ASN 6360.0080
LEU 6370.0081
THR 6380.0079
GLU 6390.0081
LEU 6400.0083
ASP 6410.0088
MET 6420.0083
ARG 6430.0077
PHE 6440.0078
ASN 6450.0078
PRO 6460.0063
PHE 6470.0055
ASP 6480.0079
CYS 6490.0087
THR 6500.0132
CYS 6510.0154
GLU 6520.0171
SER 6530.0129
ILE 6540.0094
ALA 6550.0119
TRP 6560.0086
PHE 6570.0066
VAL 6580.0048
ASN 6590.0061
TRP 6600.0060
ILE 6610.0037
ASN 6620.0035
GLU 6630.0052
THR 6640.0055
HIS 6650.0057
THR 6660.0069
ASN 6670.0066
ILE 6680.0057
PRO 6690.0068
GLU 6700.0065
LEU 6710.0040
SER 6720.0049
SER 6730.0065
HIS 6740.0054
TYR 6750.0022
LEU 6760.0027
CYS 6770.0027
ASN 6780.0019
THR 6790.0065
PRO 6800.0100
PRO 6810.0110
HIS 6820.0147
TYR 6830.0108
HIS 6840.0078
GLY 6850.0084
PHE 6860.0089
PRO 6870.0059
VAL 6880.0036
ARG 6890.0040
LEU 6900.0089
PHE 6910.0104
ASP 6920.0170
THR 6930.0180
SER 6940.0253
SER 6950.0281
CYS 6960.0271
GLU 10.0352
ALA 20.0338
ALA 30.0185
ALA 40.0139
LYS 50.0239
MET 60.0213
GLN 70.0136
ARG 80.0127
LEU 90.0214
VAL 100.0223
LEU 110.0147
LEU 120.0153
LEU 130.0213
ALA 140.0209
ILE 150.0172
SER 160.0175
LEU 170.0210
LEU 180.0205
LEU 190.0145
TYR 200.0152
GLN 210.0235
ASP 220.0231
LEU 230.0191
PRO 240.0272
VAL 250.0229
ARG 260.0387
SER 270.0234
GLU 280.0351
PHE 290.0438
GLU 300.0330
LEU 310.0066
ASP 320.0097
ARG 330.0120
ILE 340.0101
CYS 350.0167
GLY 360.0294
TYR 370.0414
GLY 380.0323
THR 390.0267
ALA 400.0081
ARG 410.0026
CYS 420.0034
ARG 430.0048
LYS 440.0086
LYS 450.0080
CYS 460.0085
ARG 470.0093
SER 480.0116
GLN 490.0091
GLU 500.0078
TYR 510.0095
ARG 520.0093
ILE 530.0092
GLY 540.0088
ARG 550.0077
CYS 560.0092
PRO 570.0113
ASN 580.0111
THR 590.0098
TYR 600.0083
ALA 610.0087
CYS 620.0074
CYS 630.0065
LEU 640.0060
ARG 650.0053
LYS 660.0087
TRP 670.0076
ASP 680.0061
GLU 690.0055
SER 700.0039
LEU 710.0052
LEU 720.0063
ASN 730.0046
ARG 740.0041
THR 750.0064
LYS 760.0075
PRO 770.0066
GLU 780.0104
ALA 790.0100
ALA 800.0065
ALA 810.0070
LYS 820.0068
LYS 830.0069
GLU 840.0072
MET 850.0085
ASN 860.0065
LEU 870.0049
SER 880.0028
VAL 890.0012
GLY 900.0037
LEU 910.0087
GLY 920.0156
GLY 930.0226
GLY 940.0199
SER 950.0139
ASN 960.0045
LEU 970.0024
SER 980.0021
VAL 990.0051
GLY 1000.0079
LEU 1010.0090
GLY 1020.0085
GLU 1030.0043
ILE 1040.0038
GLY 1050.0044
GLY 1060.0147
GLY 1070.0129
SER 1080.0120
LYS 1090.0054
LEU 1100.0051
LEU 1110.0049
ASP 1120.0055
ILE 1130.0029
ASN 1140.0040
LEU 1150.0035
GLY 1160.0069
ARG 1170.0124
GLY 1180.0150
GLY 1190.0166
GLY 1200.0147
SER 1210.0073
MET 1220.0041
VAL 1230.0022
ASP 1240.0024
LEU 1250.0048
THR 1260.0076
PHE 1270.0094
GLY 1280.0112
GLY 1290.0124
VAL 1300.0140
GLY 1310.0111
GLY 1320.0101
GLY 1330.0077
SER 1340.0086
THR 1350.0068
PHE 1360.0077
THR 1370.0073
PHE 1380.0068
PHE 1390.0073
PRO 1400.0066
LEU 1410.0089
VAL 1420.0103
ILE 1430.0145
GLY 1440.0213
GLY 1450.0261
GLY 1460.0268
SER 1470.0205
ASP 1480.0125
ALA 1490.0111
MET 1500.0064
TYR 1510.0089
LEU 1520.0083
GLY 1530.0103
PHE 1540.0102
ALA 1550.0116
ALA 1560.0115
GLY 1570.0089
GLY 1580.0066
GLY 1590.0043
SER 1600.0038
ALA 1610.0054
GLY 1620.0067
GLY 1630.0072
GLU 1640.0084
ASN 1650.0067
HIS 1660.0056
VAL 1670.0045
ALA 1680.0034
PHE 1690.0034
GLY 1700.0039
PRO 1710.0067
GLY 1720.0082
PRO 1730.0090
GLY 1740.0072
VAL 1750.0048
ASP 1760.0048
LEU 1770.0042
THR 1780.0044
PHE 1790.0043
GLY 1800.0045
GLY 1810.0057
VAL 1820.0058
GLN 1830.0064
PHE 1840.0064
ALA 1850.0076
MET 1860.0069
VAL 1870.0069
ASN 1880.0100
ASN 1890.0129
GLY 1900.0185
PRO 1910.0153
GLY 1920.0129
PRO 1930.0118
GLY 1940.0093
GLU 1950.0060
SER 1960.0060
PHE 1970.0056
THR 1980.0047
ALA 1990.0054
GLN 2000.0056
PRO 2010.0037
ALA 2020.0075
ASP 2030.0036
MET 2040.0107
GLN 2050.0144
ALA 2060.0121
GLY 2070.0185
ILE 2080.0178
LYS 2090.0125
GLY 2100.0253
PRO 2110.0166
GLY 2120.0159
PRO 2130.0151
GLY 2140.0154
GLY 2150.0155
SER 2160.0201
ILE 2170.0171
GLN 2180.0150
VAL 2190.0155
ILE 2200.0197
ASN 2210.0233
GLY 2220.0225
SER 2230.0194
THR 2240.0267
ILE 2250.0301
GLY 2260.0335
THR 2270.0336
GLY 2280.0252
SER 2290.0152
LYS 2300.0084
LYS 2310.0066
THR 2320.0110
ILE 2330.0186
LEU 2340.0287
ILE 2350.0389
TYR 2360.0323
SER 2370.0197
ILE 2380.0095
ILE 2390.0068
GLY 2400.0191
VAL 2410.0416
LYS 2420.0409
LYS 2430.0444
GLY 2440.0401
THR 2450.0346
LEU 2460.0214
ALA 2470.0054
TRP 2480.0122
ALA 2490.0220
ARG 2500.0366
THR 2510.0428
GLY 2520.0339
PHE 2530.0219
SER 2540.0119
PRO 2550.0139
ALA 2560.0147
LYS 2570.0112
LYS 2580.0138
LEU 2590.0183
ASN 2600.0199
ALA 2610.0237
GLY 2620.0204
VAL 2630.0138
VAL 2640.0150
ARG 2650.0122
VAL 2660.0127
PHE 2670.0138
PHE 2680.0135
LEU 2690.0161
ASN 2700.0170
GLN 2710.0183
LYS 2720.0128
LYS 2730.0102
ALA 2740.0096
LYS 2750.0063
ASP 2760.0095
VAL 2770.0025
LEU 2780.0144
ARG 2790.0193
LYS 2800.0133
THR 2810.0026
SER 2820.0093
ARG 2830.0087
PRO 2840.0156
MET 2850.0170
VAL 2860.0158
ASP 2870.0126
LEU 2880.0073
THR 2890.0052
PHE 2900.0113
GLY 2910.0094
GLY 2920.0193

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elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.