CNRS Nantes University US2B US2B
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***  TLR_3_simulation  ***

<R2> analysis for 2608260340483950756

---  normal mode 76  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0625
THR 260.0151
LYS 270.0143
CYS 280.0138
THR 290.0135
VAL 300.0127
SER 310.0132
HIS 320.0131
GLU 330.0114
VAL 340.0118
ALA 350.0110
ASP 360.0121
CYS 370.0123
SER 380.0126
HIS 390.0130
LEU 400.0130
LYS 410.0102
LEU 420.0090
THR 430.0073
GLN 440.0069
VAL 450.0078
PRO 460.0094
ASP 470.0083
ASP 480.0090
LEU 490.0085
PRO 500.0074
THR 510.0060
ASN 520.0062
ILE 530.0068
THR 540.0071
VAL 550.0079
LEU 560.0080
ASN 570.0085
LEU 580.0081
THR 590.0088
HIS 600.0091
ASN 610.0087
GLN 620.0077
LEU 630.0065
ARG 640.0059
ARG 650.0050
LEU 660.0066
PRO 670.0063
ALA 680.0054
ALA 690.0055
ASN 700.0060
PHE 710.0058
THR 720.0049
ARG 730.0054
TYR 740.0054
SER 750.0046
GLN 760.0049
LEU 770.0048
THR 780.0040
SER 790.0042
LEU 800.0048
ASP 810.0062
VAL 820.0059
GLY 830.0063
PHE 840.0064
ASN 850.0060
THR 860.0077
ILE 870.0065
SER 880.0068
LYS 890.0057
LEU 900.0046
GLU 910.0061
PRO 920.0052
GLU 930.0048
LEU 940.0039
CYS 950.0027
GLN 960.0037
LYS 970.0036
LEU 980.0029
PRO 990.0017
MET 1000.0010
LEU 1010.0015
LYS 1020.0027
VAL 1030.0027
LEU 1040.0021
ASN 1050.0033
LEU 1060.0039
GLN 1070.0051
HIS 1080.0063
ASN 1090.0062
GLU 1100.0063
LEU 1110.0043
SER 1120.0048
GLN 1130.0050
LEU 1140.0038
SER 1150.0058
ASP 1160.0079
LYS 1170.0078
THR 1180.0049
PHE 1190.0042
ALA 1200.0070
PHE 1210.0062
CYS 1220.0045
THR 1230.0067
ASN 1240.0061
LEU 1250.0049
THR 1260.0084
GLU 1270.0071
LEU 1280.0047
HIS 1290.0044
LEU 1300.0023
MET 1310.0055
SER 1320.0060
ASN 1330.0042
SER 1340.0043
ILE 1350.0018
GLN 1360.0030
LYS 1370.0026
ILE 1380.0041
LYS 1390.0056
ASN 1400.0078
ASN 1410.0086
PRO 1420.0072
PHE 1430.0079
VAL 1440.0100
LYS 1450.0100
GLN 1460.0097
LYS 1470.0124
ASN 1480.0120
LEU 1490.0104
ILE 1500.0118
THR 1510.0105
LEU 1520.0088
ASP 1530.0082
LEU 1540.0068
SER 1550.0078
HIS 1560.0090
ASN 1570.0077
GLY 1580.0075
LEU 1590.0073
SER 1600.0077
SER 1610.0111
THR 1620.0111
LYS 1630.0105
LEU 1640.0102
GLY 1650.0104
THR 1660.0111
GLN 1670.0124
VAL 1680.0131
GLN 1690.0124
LEU 1700.0121
GLU 1710.0147
ASN 1720.0148
LEU 1730.0133
GLN 1740.0139
GLU 1750.0124
LEU 1760.0114
LEU 1770.0110
LEU 1780.0106
SER 1790.0109
ASN 1800.0107
ASN 1810.0116
LYS 1820.0121
ILE 1830.0118
GLN 1840.0123
ALA 1850.0120
LEU 1860.0125
LYS 1870.0129
SER 1880.0120
GLU 1890.0132
GLU 1900.0132
LEU 1910.0120
ASP 1920.0120
ILE 1930.0127
PHE 1940.0121
ALA 1950.0118
ASN 1960.0128
SER 1970.0125
SER 1980.0126
LEU 1990.0119
LYS 2000.0122
LYS 2010.0108
LEU 2020.0107
GLU 2030.0106
LEU 2040.0105
SER 2050.0102
SER 2060.0109
ASN 2070.0120
GLN 2080.0127
ILE 2090.0125
LYS 2100.0135
GLU 2110.0138
PHE 2120.0127
SER 2130.0141
PRO 2140.0138
GLY 2150.0126
CYS 2160.0128
PHE 2170.0099
HIS 2180.0099
ALA 2190.0117
ILE 2200.0103
GLY 2210.0090
ARG 2220.0082
LEU 2230.0081
PHE 2240.0076
GLY 2250.0078
LEU 2260.0065
PHE 2270.0069
LEU 2280.0073
ASN 2290.0070
ASN 2300.0079
VAL 2310.0083
GLN 2320.0082
LEU 2330.0079
GLY 2340.0067
PRO 2350.0070
SER 2360.0093
LEU 2370.0093
THR 2380.0071
GLU 2390.0089
LYS 2400.0107
LEU 2410.0088
CYS 2420.0077
LEU 2430.0106
GLU 2440.0106
LEU 2450.0079
ALA 2460.0099
ASN 2470.0101
THR 2480.0074
SER 2490.0043
ILE 2500.0030
ARG 2510.0014
ASN 2520.0017
LEU 2530.0009
SER 2540.0020
LEU 2550.0024
SER 2560.0025
ASN 2570.0033
SER 2580.0035
GLN 2590.0031
LEU 2600.0031
SER 2610.0027
THR 2620.0035
THR 2630.0047
SER 2640.0058
ASN 2650.0074
THR 2660.0091
THR 2670.0064
PHE 2680.0067
LEU 2690.0096
GLY 2700.0097
LEU 2710.0074
LYS 2720.0113
TRP 2730.0116
THR 2740.0077
ASN 2750.0075
LEU 2760.0057
THR 2770.0069
MET 2780.0059
LEU 2790.0044
ASP 2800.0044
LEU 2810.0058
SER 2820.0060
TYR 2830.0060
ASN 2840.0057
ASN 2850.0057
LEU 2860.0062
ASN 2870.0059
VAL 2880.0056
VAL 2890.0063
GLY 2900.0060
ASN 2910.0060
ASP 2920.0072
SER 2930.0062
PHE 2940.0073
ALA 2950.0086
TRP 2960.0090
LEU 2970.0081
PRO 2980.0106
GLN 2990.0097
LEU 3000.0084
GLU 3010.0096
TYR 3020.0092
PHE 3030.0078
PHE 3040.0078
LEU 3050.0068
GLU 3060.0077
TYR 3070.0081
ASN 3080.0081
ASN 3090.0080
ILE 3100.0077
GLN 3110.0061
HIS 3120.0054
LEU 3130.0058
PHE 3140.0048
SER 3150.0053
HIS 3160.0061
SER 3170.0060
LEU 3180.0070
HIS 3190.0072
GLY 3200.0081
LEU 3210.0076
PHE 3220.0087
ASN 3230.0094
VAL 3240.0090
ARG 3250.0100
TYR 3260.0090
LEU 3270.0076
ASN 3280.0086
LEU 3290.0077
LYS 3300.0096
ARG 3310.0086
SER 3320.0082
PHE 3330.0078
THR 3340.0090
LYS 3350.0099
GLN 3360.0157
SER 3370.0137
ILE 3380.0222
SER 3390.0205
LEU 3400.0147
ALA 3410.0145
SER 3420.0097
LEU 3430.0105
PRO 3440.0077
LYS 3450.0058
ILE 3460.0063
ASP 3470.0046
ASP 3480.0037
PHE 3490.0032
SER 3500.0042
PHE 3510.0053
GLN 3520.0049
TRP 3530.0055
LEU 3540.0065
LYS 3550.0069
CYS 3560.0075
LEU 3570.0068
GLU 3580.0081
HIS 3590.0085
LEU 3600.0074
ASN 3610.0083
MET 3620.0080
GLU 3630.0103
ASP 3640.0121
ASN 3650.0112
ASP 3660.0134
ILE 3670.0111
PRO 3680.0120
GLY 3690.0102
ILE 3700.0077
LYS 3710.0071
SER 3720.0061
ASN 3730.0048
MET 3740.0048
PHE 3750.0038
THR 3760.0033
GLY 3770.0031
LEU 3780.0036
ILE 3790.0042
ASN 3800.0054
LEU 3810.0038
LYS 3820.0052
TYR 3830.0059
LEU 3840.0053
SER 3850.0072
LEU 3860.0083
SER 3870.0099
ASN 3880.0116
SER 3890.0109
PHE 3900.0113
THR 3910.0150
SER 3920.0130
LEU 3930.0103
ARG 3940.0099
THR 3950.0090
LEU 3960.0072
THR 3970.0087
ASN 3980.0086
GLU 3990.0088
THR 4000.0074
PHE 4010.0049
VAL 4020.0056
SER 4030.0045
LEU 4040.0026
ALA 4050.0037
HIS 4060.0036
SER 4070.0020
PRO 4080.0029
LEU 4090.0017
HIS 4100.0024
ILE 4110.0026
LEU 4120.0026
ASN 4130.0047
LEU 4140.0055
THR 4150.0073
LYS 4160.0098
ASN 4170.0093
LYS 4180.0094
ILE 4190.0069
SER 4200.0069
LYS 4210.0063
ILE 4220.0053
GLU 4230.0071
SER 4240.0076
ASP 4250.0068
ALA 4260.0059
PHE 4270.0045
SER 4280.0059
TRP 4290.0054
LEU 4300.0037
GLY 4310.0050
HIS 4320.0040
LEU 4330.0029
GLU 4340.0030
VAL 4350.0017
LEU 4360.0018
ASP 4370.0033
LEU 4380.0029
GLY 4390.0047
LEU 4400.0065
ASN 4410.0061
GLU 4420.0050
ILE 4430.0032
GLY 4440.0026
GLN 4450.0029
GLU 4460.0051
LEU 4470.0046
THR 4480.0045
GLY 4490.0046
GLN 4500.0049
GLU 4510.0050
TRP 4520.0049
ARG 4530.0060
GLY 4540.0061
LEU 4550.0050
GLU 4560.0056
ASN 4570.0051
ILE 4580.0048
PHE 4590.0049
GLU 4600.0044
ILE 4610.0047
TYR 4620.0061
LEU 4630.0063
SER 4640.0081
TYR 4650.0093
ASN 4660.0080
LYS 4670.0079
TYR 4680.0077
LEU 4690.0071
GLN 4700.0071
LEU 4710.0077
THR 4720.0069
ARG 4730.0058
ASN 4740.0046
SER 4750.0052
PHE 4760.0045
ALA 4770.0041
LEU 4780.0038
VAL 4790.0039
PRO 4800.0038
SER 4810.0038
LEU 4820.0046
GLN 4830.0049
ARG 4840.0060
LEU 4850.0065
MET 4860.0080
LEU 4870.0089
ARG 4880.0107
ARG 4890.0122
VAL 4900.0113
ALA 4910.0127
LEU 4920.0112
LYS 4930.0114
ASN 4940.0107
VAL 4950.0098
ASP 4960.0107
SER 4970.0100
SER 4980.0102
PRO 4990.0079
SER 5000.0066
PRO 5010.0063
PHE 5020.0044
GLN 5030.0034
PRO 5040.0021
LEU 5050.0019
ARG 5060.0014
ASN 5070.0038
LEU 5080.0040
THR 5090.0053
ILE 5100.0066
LEU 5110.0065
ASP 5120.0090
LEU 5130.0099
SER 5140.0119
ASN 5150.0144
ASN 5160.0148
ASN 5170.0153
ILE 5180.0137
ALA 5190.0143
ASN 5200.0135
ILE 5210.0103
ASN 5220.0100
ASP 5230.0086
ASP 5240.0073
MET 5250.0061
LEU 5260.0028
GLU 5270.0038
GLY 5280.0036
LEU 5290.0014
GLU 5300.0040
LYS 5310.0049
LEU 5320.0037
GLU 5330.0059
ILE 5340.0064
LEU 5350.0052
ASP 5360.0074
LEU 5370.0078
GLN 5380.0097
HIS 5390.0122
ASN 5400.0120
ASN 5410.0127
LEU 5420.0098
ALA 5430.0095
ARG 5440.0123
LEU 5450.0108
TRP 5460.0076
LYS 5470.0105
HIS 5480.0138
ALA 5490.0175
ASN 5500.0180
PRO 5510.0263
GLY 5520.0258
GLY 5530.0201
PRO 5540.0126
ILE 5550.0097
TYR 5560.0063
PHE 5570.0047
LEU 5580.0019
LYS 5590.0047
GLY 5600.0053
LEU 5610.0037
SER 5620.0055
HIS 5630.0057
LEU 5640.0044
HIS 5650.0056
ILE 5660.0055
LEU 5670.0038
ASN 5680.0048
LEU 5690.0038
GLU 5700.0058
SER 5710.0081
ASN 5720.0066
GLY 5730.0059
PHE 5740.0030
ASP 5750.0024
GLU 5760.0026
ILE 5770.0027
PRO 5780.0048
VAL 5790.0065
GLU 5800.0063
VAL 5810.0032
PHE 5820.0042
LYS 5830.0058
ASP 5840.0060
LEU 5850.0054
PHE 5860.0058
GLU 5870.0057
LEU 5880.0054
LYS 5890.0059
ILE 5900.0056
ILE 5910.0054
ASP 5920.0053
LEU 5930.0048
GLY 5940.0055
LEU 5950.0049
ASN 5960.0052
ASN 5970.0054
LEU 5980.0057
ASN 5990.0072
THR 6000.0074
LEU 6010.0053
PRO 6020.0054
ALA 6030.0053
SER 6040.0054
VAL 6050.0056
PHE 6060.0057
ASN 6070.0057
ASN 6080.0055
GLN 6090.0055
VAL 6100.0057
SER 6110.0052
LEU 6120.0054
LYS 6130.0054
SER 6140.0057
LEU 6150.0060
ASN 6160.0067
LEU 6170.0076
GLN 6180.0082
LYS 6190.0096
ASN 6200.0099
LEU 6210.0122
ILE 6220.0103
THR 6230.0099
SER 6240.0091
VAL 6250.0074
GLU 6260.0059
LYS 6270.0049
LYS 6280.0068
VAL 6290.0067
PHE 6300.0046
GLY 6310.0037
PRO 6320.0036
ALA 6330.0041
PHE 6340.0032
ARG 6350.0024
ASN 6360.0021
LEU 6370.0033
THR 6380.0042
GLU 6390.0053
LEU 6400.0051
ASP 6410.0070
MET 6420.0069
ARG 6430.0093
PHE 6440.0116
ASN 6450.0103
PRO 6460.0133
PHE 6470.0082
ASP 6480.0094
CYS 6490.0063
THR 6500.0115
CYS 6510.0174
GLU 6520.0203
SER 6530.0144
ILE 6540.0075
ALA 6550.0126
TRP 6560.0061
PHE 6570.0024
VAL 6580.0054
ASN 6590.0078
TRP 6600.0055
ILE 6610.0069
ASN 6620.0095
GLU 6630.0081
THR 6640.0051
HIS 6650.0048
THR 6660.0053
ASN 6670.0078
ILE 6680.0079
PRO 6690.0114
GLU 6700.0129
LEU 6710.0114
SER 6720.0139
SER 6730.0156
HIS 6740.0132
TYR 6750.0087
LEU 6760.0114
CYS 6770.0069
ASN 6780.0125
THR 6790.0135
PRO 6800.0108
PRO 6810.0108
HIS 6820.0028
TYR 6830.0023
HIS 6840.0106
GLY 6850.0156
PHE 6860.0113
PRO 6870.0115
VAL 6880.0065
ARG 6890.0106
LEU 6900.0137
PHE 6910.0131
ASP 6920.0221
THR 6930.0251
SER 6940.0366
SER 6950.0354
CYS 6960.0337
GLU 10.0468
ALA 20.0411
ALA 30.0185
ALA 40.0162
LYS 50.0266
MET 60.0217
GLN 70.0136
ARG 80.0128
LEU 90.0223
VAL 100.0238
LEU 110.0146
LEU 120.0150
LEU 130.0197
ALA 140.0188
ILE 150.0149
SER 160.0153
LEU 170.0156
LEU 180.0127
LEU 190.0050
TYR 200.0056
GLN 210.0108
ASP 220.0175
LEU 230.0186
PRO 240.0252
VAL 250.0147
ARG 260.0165
SER 270.0122
GLU 280.0170
PHE 290.0114
GLU 300.0052
LEU 310.0116
ASP 320.0130
ARG 330.0055
ILE 340.0082
CYS 350.0146
GLY 360.0365
TYR 370.0533
GLY 380.0376
THR 390.0331
ALA 400.0056
ARG 410.0024
CYS 420.0059
ARG 430.0083
LYS 440.0122
LYS 450.0130
CYS 460.0142
ARG 470.0158
SER 480.0205
GLN 490.0179
GLU 500.0138
TYR 510.0132
ARG 520.0126
ILE 530.0117
GLY 540.0119
ARG 550.0110
CYS 560.0102
PRO 570.0119
ASN 580.0128
THR 590.0131
TYR 600.0117
ALA 610.0135
CYS 620.0095
CYS 630.0090
LEU 640.0076
ARG 650.0112
LYS 660.0171
TRP 670.0187
ASP 680.0149
GLU 690.0107
SER 700.0132
LEU 710.0164
LEU 720.0124
ASN 730.0099
ARG 740.0149
THR 750.0143
LYS 760.0102
PRO 770.0124
GLU 780.0254
ALA 790.0200
ALA 800.0152
ALA 810.0315
LYS 820.0256
LYS 830.0216
GLU 840.0173
MET 850.0119
ASN 860.0085
LEU 870.0048
SER 880.0050
VAL 890.0032
GLY 900.0040
LEU 910.0043
GLY 920.0056
GLY 930.0051
GLY 940.0033
SER 950.0038
ASN 960.0040
LEU 970.0046
SER 980.0065
VAL 990.0062
GLY 1000.0097
LEU 1010.0098
GLY 1020.0180
GLU 1030.0157
ILE 1040.0139
GLY 1050.0100
GLY 1060.0198
GLY 1070.0189
SER 1080.0180
LYS 1090.0124
LEU 1100.0130
LEU 1110.0138
ASP 1120.0137
ILE 1130.0110
ASN 1140.0118
LEU 1150.0095
GLY 1160.0206
ARG 1170.0221
GLY 1180.0191
GLY 1190.0126
GLY 1200.0072
SER 1210.0027
MET 1220.0038
VAL 1230.0048
ASP 1240.0060
LEU 1250.0074
THR 1260.0082
PHE 1270.0092
GLY 1280.0109
GLY 1290.0142
VAL 1300.0146
GLY 1310.0116
GLY 1320.0120
GLY 1330.0110
SER 1340.0107
THR 1350.0097
PHE 1360.0100
THR 1370.0106
PHE 1380.0091
PHE 1390.0099
PRO 1400.0089
LEU 1410.0094
VAL 1420.0093
ILE 1430.0112
GLY 1440.0162
GLY 1450.0176
GLY 1460.0107
SER 1470.0101
ASP 1480.0075
ALA 1490.0091
MET 1500.0081
TYR 1510.0074
LEU 1520.0078
GLY 1530.0093
PHE 1540.0102
ALA 1550.0115
ALA 1560.0119
GLY 1570.0103
GLY 1580.0097
GLY 1590.0069
SER 1600.0052
ALA 1610.0067
GLY 1620.0070
GLY 1630.0080
GLU 1640.0078
ASN 1650.0089
HIS 1660.0075
VAL 1670.0072
ALA 1680.0065
PHE 1690.0061
GLY 1700.0057
PRO 1710.0076
GLY 1720.0064
PRO 1730.0053
GLY 1740.0040
VAL 1750.0039
ASP 1760.0039
LEU 1770.0050
THR 1780.0062
PHE 1790.0078
GLY 1800.0090
GLY 1810.0088
VAL 1820.0042
GLN 1830.0041
PHE 1840.0025
ALA 1850.0060
MET 1860.0080
VAL 1870.0092
ASN 1880.0081
ASN 1890.0128
GLY 1900.0129
PRO 1910.0223
GLY 1920.0280
PRO 1930.0234
GLY 1940.0176
GLU 1950.0190
SER 1960.0335
PHE 1970.0240
THR 1980.0187
ALA 1990.0131
GLN 2000.0042
PRO 2010.0178
ALA 2020.0224
ASP 2030.0228
MET 2040.0324
GLN 2050.0421
ALA 2060.0234
GLY 2070.0239
ILE 2080.0363
LYS 2090.0294
GLY 2100.0625
PRO 2110.0443
GLY 2120.0271
PRO 2130.0099
GLY 2140.0061
GLY 2150.0225
SER 2160.0226
ILE 2170.0146
GLN 2180.0146
VAL 2190.0200
ILE 2200.0140
ASN 2210.0277
GLY 2220.0209
SER 2230.0130
THR 2240.0206
ILE 2250.0141
GLY 2260.0148
THR 2270.0077
GLY 2280.0054
SER 2290.0119
LYS 2300.0102
LYS 2310.0095
THR 2320.0091
ILE 2330.0088
LEU 2340.0081
ILE 2350.0104
TYR 2360.0087
SER 2370.0103
ILE 2380.0075
ILE 2390.0069
GLY 2400.0061
VAL 2410.0102
LYS 2420.0091
LYS 2430.0141
GLY 2440.0152
THR 2450.0109
LEU 2460.0048
ALA 2470.0041
TRP 2480.0071
ALA 2490.0108
ARG 2500.0143
THR 2510.0175
GLY 2520.0123
PHE 2530.0068
SER 2540.0023
PRO 2550.0039
ALA 2560.0099
LYS 2570.0106
LYS 2580.0080
LEU 2590.0112
ASN 2600.0118
ALA 2610.0137
GLY 2620.0109
VAL 2630.0060
VAL 2640.0069
ARG 2650.0046
VAL 2660.0041
PHE 2670.0048
PHE 2680.0033
LEU 2690.0048
ASN 2700.0043
GLN 2710.0041
LYS 2720.0039
LYS 2730.0046
ALA 2740.0039
LYS 2750.0030
ASP 2760.0039
VAL 2770.0031
LEU 2780.0025
ARG 2790.0022
LYS 2800.0027
THR 2810.0022
SER 2820.0016
ARG 2830.0009
PRO 2840.0010
MET 2850.0019
VAL 2860.0032
ASP 2870.0034
LEU 2880.0025
THR 2890.0027
PHE 2900.0024
GLY 2910.0031
GLY 2920.0034

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elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.