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***  TLR_3_simulation  ***

<R2> analysis for 2608260340483950756

---  normal mode 77  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0753
THR 260.0009
LYS 270.0006
CYS 280.0003
THR 290.0002
VAL 300.0004
SER 310.0008
HIS 320.0009
GLU 330.0006
VAL 340.0005
ALA 350.0004
ASP 360.0005
CYS 370.0005
SER 380.0008
HIS 390.0010
LEU 400.0008
LYS 410.0009
LEU 420.0009
THR 430.0009
GLN 440.0009
VAL 450.0009
PRO 460.0009
ASP 470.0010
ASP 480.0010
LEU 490.0009
PRO 500.0009
THR 510.0009
ASN 520.0008
ILE 530.0007
THR 540.0006
VAL 550.0005
LEU 560.0007
ASN 570.0008
LEU 580.0007
THR 590.0008
HIS 600.0008
ASN 610.0009
GLN 620.0009
LEU 630.0009
ARG 640.0009
ARG 650.0009
LEU 660.0010
PRO 670.0009
ALA 680.0010
ALA 690.0010
ASN 700.0010
PHE 710.0009
THR 720.0010
ARG 730.0010
TYR 740.0010
SER 750.0010
GLN 760.0008
LEU 770.0008
THR 780.0008
SER 790.0008
LEU 800.0008
ASP 810.0008
VAL 820.0009
GLY 830.0009
PHE 840.0009
ASN 850.0009
THR 860.0010
ILE 870.0010
SER 880.0010
LYS 890.0010
LEU 900.0011
GLU 910.0011
PRO 920.0012
GLU 930.0012
LEU 940.0012
CYS 950.0013
GLN 960.0011
LYS 970.0012
LEU 980.0012
PRO 990.0012
MET 1000.0012
LEU 1010.0012
LYS 1020.0012
VAL 1030.0011
LEU 1040.0011
ASN 1050.0011
LEU 1060.0010
GLN 1070.0010
HIS 1080.0010
ASN 1090.0010
GLU 1100.0010
LEU 1110.0010
SER 1120.0008
GLN 1130.0010
LEU 1140.0011
SER 1150.0013
ASP 1160.0013
LYS 1170.0015
THR 1180.0013
PHE 1190.0013
ALA 1200.0015
PHE 1210.0015
CYS 1220.0014
THR 1230.0014
ASN 1240.0014
LEU 1250.0012
THR 1260.0011
GLU 1270.0011
LEU 1280.0010
HIS 1290.0010
LEU 1300.0009
MET 1310.0009
SER 1320.0009
ASN 1330.0008
SER 1340.0008
ILE 1350.0007
GLN 1360.0007
LYS 1370.0008
ILE 1380.0009
LYS 1390.0012
ASN 1400.0013
ASN 1410.0011
PRO 1420.0010
PHE 1430.0009
VAL 1440.0009
LYS 1450.0011
GLN 1460.0009
LYS 1470.0008
ASN 1480.0009
LEU 1490.0009
ILE 1500.0010
THR 1510.0009
LEU 1520.0007
ASP 1530.0008
LEU 1540.0007
SER 1550.0007
HIS 1560.0008
ASN 1570.0006
GLY 1580.0005
LEU 1590.0005
SER 1600.0006
SER 1610.0008
THR 1620.0007
LYS 1630.0007
LEU 1640.0006
GLY 1650.0007
THR 1660.0012
GLN 1670.0010
VAL 1680.0008
GLN 1690.0006
LEU 1700.0007
GLU 1710.0007
ASN 1720.0009
LEU 1730.0008
GLN 1740.0011
GLU 1750.0010
LEU 1760.0009
LEU 1770.0009
LEU 1780.0007
SER 1790.0008
ASN 1800.0007
ASN 1810.0006
LYS 1820.0005
ILE 1830.0006
GLN 1840.0006
ALA 1850.0008
LEU 1860.0010
LYS 1870.0011
SER 1880.0012
GLU 1890.0011
GLU 1900.0009
LEU 1910.0011
ASP 1920.0012
ILE 1930.0009
PHE 1940.0011
ALA 1950.0013
ASN 1960.0012
SER 1970.0012
SER 1980.0014
LEU 1990.0013
LYS 2000.0014
LYS 2010.0013
LEU 2020.0011
GLU 2030.0009
LEU 2040.0008
SER 2050.0008
SER 2060.0006
ASN 2070.0005
GLN 2080.0004
ILE 2090.0005
LYS 2100.0006
GLU 2110.0007
PHE 2120.0009
SER 2130.0010
PRO 2140.0012
GLY 2150.0013
CYS 2160.0012
PHE 2170.0013
HIS 2180.0014
ALA 2190.0014
ILE 2200.0014
GLY 2210.0016
ARG 2220.0016
LEU 2230.0015
PHE 2240.0015
GLY 2250.0014
LEU 2260.0010
PHE 2270.0008
LEU 2280.0006
ASN 2290.0005
ASN 2300.0003
VAL 2310.0002
GLN 2320.0001
LEU 2330.0002
GLY 2340.0002
PRO 2350.0002
SER 2360.0003
LEU 2370.0003
THR 2380.0004
GLU 2390.0004
LYS 2400.0005
LEU 2410.0007
CYS 2420.0008
LEU 2430.0008
GLU 2440.0010
LEU 2450.0011
ALA 2460.0011
ASN 2470.0013
THR 2480.0013
SER 2490.0014
ILE 2500.0012
ARG 2510.0010
ASN 2520.0009
LEU 2530.0006
SER 2540.0005
LEU 2550.0002
SER 2560.0001
ASN 2570.0003
SER 2580.0003
GLN 2590.0004
LEU 2600.0003
SER 2610.0005
THR 2620.0005
THR 2630.0005
SER 2640.0006
ASN 2650.0007
THR 2660.0003
THR 2670.0003
PHE 2680.0005
LEU 2690.0005
GLY 2700.0006
LEU 2710.0007
LYS 2720.0006
TRP 2730.0007
THR 2740.0009
ASN 2750.0010
LEU 2760.0008
THR 2770.0009
MET 2780.0007
LEU 2790.0005
ASP 2800.0003
LEU 2810.0002
SER 2820.0002
TYR 2830.0006
ASN 2840.0006
ASN 2850.0008
LEU 2860.0005
ASN 2870.0005
VAL 2880.0004
VAL 2890.0005
GLY 2900.0007
ASN 2910.0011
ASP 2920.0012
SER 2930.0009
PHE 2940.0010
ALA 2950.0013
TRP 2960.0009
LEU 2970.0010
PRO 2980.0011
GLN 2990.0012
LEU 3000.0010
GLU 3010.0011
TYR 3020.0008
PHE 3030.0006
PHE 3040.0003
LEU 3050.0003
GLU 3060.0006
TYR 3070.0009
ASN 3080.0007
ASN 3090.0008
ILE 3100.0005
GLN 3110.0011
HIS 3120.0011
LEU 3130.0009
PHE 3140.0013
SER 3150.0015
HIS 3160.0015
SER 3170.0012
LEU 3180.0012
HIS 3190.0015
GLY 3200.0016
LEU 3210.0014
PHE 3220.0016
ASN 3230.0015
VAL 3240.0012
ARG 3250.0012
TYR 3260.0007
LEU 3270.0005
ASN 3280.0002
LEU 3290.0006
LYS 3300.0008
ARG 3310.0014
SER 3320.0008
PHE 3330.0011
THR 3340.0014
LYS 3350.0021
GLN 3360.0033
SER 3370.0037
ILE 3380.0050
SER 3390.0050
LEU 3400.0035
ALA 3410.0033
SER 3420.0024
LEU 3430.0024
PRO 3440.0018
LYS 3450.0019
ILE 3460.0015
ASP 3470.0017
ASP 3480.0018
PHE 3490.0016
SER 3500.0014
PHE 3510.0011
GLN 3520.0015
TRP 3530.0016
LEU 3540.0013
LYS 3550.0016
CYS 3560.0016
LEU 3570.0011
GLU 3580.0011
HIS 3590.0008
LEU 3600.0003
ASN 3610.0005
MET 3620.0008
GLU 3630.0011
ASP 3640.0015
ASN 3650.0016
ASP 3660.0017
ILE 3670.0016
PRO 3680.0018
GLY 3690.0017
ILE 3700.0014
LYS 3710.0014
SER 3720.0012
ASN 3730.0013
MET 3740.0010
PHE 3750.0005
THR 3760.0009
GLY 3770.0013
LEU 3780.0010
ILE 3790.0015
ASN 3800.0015
LEU 3810.0010
LYS 3820.0013
TYR 3830.0013
LEU 3840.0009
SER 3850.0012
LEU 3860.0012
SER 3870.0017
ASN 3880.0020
SER 3890.0017
PHE 3900.0017
THR 3910.0021
SER 3920.0019
LEU 3930.0016
ARG 3940.0019
THR 3950.0020
LEU 3960.0019
THR 3970.0018
ASN 3980.0018
GLU 3990.0014
THR 4000.0013
PHE 4010.0010
VAL 4020.0007
SER 4030.0006
LEU 4040.0009
ALA 4050.0013
HIS 4060.0011
SER 4070.0011
PRO 4080.0016
LEU 4090.0015
HIS 4100.0020
ILE 4110.0020
LEU 4120.0018
ASN 4130.0020
LEU 4140.0020
THR 4150.0023
LYS 4160.0026
ASN 4170.0022
LYS 4180.0025
ILE 4190.0023
SER 4200.0026
LYS 4210.0025
ILE 4220.0025
GLU 4230.0025
SER 4240.0025
ASP 4250.0025
ALA 4260.0021
PHE 4270.0021
SER 4280.0022
TRP 4290.0019
LEU 4300.0020
GLY 4310.0022
HIS 4320.0021
LEU 4330.0022
GLU 4340.0024
VAL 4350.0024
LEU 4360.0025
ASP 4370.0025
LEU 4380.0026
GLY 4390.0028
LEU 4400.0029
ASN 4410.0029
GLU 4420.0028
ILE 4430.0028
GLY 4440.0028
GLN 4450.0029
GLU 4460.0028
LEU 4470.0027
THR 4480.0028
GLY 4490.0026
GLN 4500.0026
GLU 4510.0026
TRP 4520.0025
ARG 4530.0026
GLY 4540.0024
LEU 4550.0023
GLU 4560.0026
ASN 4570.0024
ILE 4580.0025
PHE 4590.0026
GLU 4600.0026
ILE 4610.0026
TYR 4620.0026
LEU 4630.0028
SER 4640.0028
TYR 4650.0029
ASN 4660.0028
LYS 4670.0027
TYR 4680.0027
LEU 4690.0027
GLN 4700.0027
LEU 4710.0022
THR 4720.0022
ARG 4730.0022
ASN 4740.0023
SER 4750.0023
PHE 4760.0021
ALA 4770.0022
LEU 4780.0020
VAL 4790.0019
PRO 4800.0019
SER 4810.0023
LEU 4820.0021
GLN 4830.0019
ARG 4840.0019
LEU 4850.0023
MET 4860.0026
LEU 4870.0026
ARG 4880.0026
ARG 4890.0026
VAL 4900.0026
ALA 4910.0021
LEU 4920.0021
LYS 4930.0021
ASN 4940.0021
VAL 4950.0024
ASP 4960.0022
SER 4970.0023
SER 4980.0025
PRO 4990.0026
SER 5000.0025
PRO 5010.0024
PHE 5020.0024
GLN 5030.0026
PRO 5040.0029
LEU 5050.0028
ARG 5060.0046
ASN 5070.0040
LEU 5080.0028
THR 5090.0030
ILE 5100.0020
LEU 5110.0025
ASP 5120.0024
LEU 5130.0022
SER 5140.0022
ASN 5150.0020
ASN 5160.0019
ASN 5170.0012
ILE 5180.0015
ALA 5190.0014
ASN 5200.0021
ILE 5210.0024
ASN 5220.0028
ASP 5230.0027
ASP 5240.0031
MET 5250.0030
LEU 5260.0030
GLU 5270.0035
GLY 5280.0042
LEU 5290.0039
GLU 5300.0041
LYS 5310.0047
LEU 5320.0038
GLU 5330.0038
ILE 5340.0031
LEU 5350.0023
ASP 5360.0021
LEU 5370.0017
GLN 5380.0014
HIS 5390.0011
ASN 5400.0011
ASN 5410.0009
LEU 5420.0014
ALA 5430.0015
ARG 5440.0025
LEU 5450.0026
TRP 5460.0024
LYS 5470.0035
HIS 5480.0044
ALA 5490.0053
ASN 5500.0049
PRO 5510.0064
GLY 5520.0065
GLY 5530.0051
PRO 5540.0033
ILE 5550.0031
TYR 5560.0024
PHE 5570.0027
LEU 5580.0021
LYS 5590.0024
GLY 5600.0030
LEU 5610.0030
SER 5620.0031
HIS 5630.0035
LEU 5640.0030
HIS 5650.0030
ILE 5660.0021
LEU 5670.0015
ASN 5680.0012
LEU 5690.0008
GLU 5700.0005
SER 5710.0004
ASN 5720.0008
GLY 5730.0013
PHE 5740.0015
ASP 5750.0022
GLU 5760.0025
ILE 5770.0019
PRO 5780.0022
VAL 5790.0019
GLU 5800.0016
VAL 5810.0013
PHE 5820.0005
LYS 5830.0008
ASP 5840.0012
LEU 5850.0012
PHE 5860.0010
GLU 5870.0019
LEU 5880.0013
LYS 5890.0018
ILE 5900.0013
ILE 5910.0002
ASP 5920.0001
LEU 5930.0006
GLY 5940.0007
LEU 5950.0010
ASN 5960.0015
ASN 5970.0016
LEU 5980.0018
ASN 5990.0019
THR 6000.0021
LEU 6010.0020
PRO 6020.0022
ALA 6030.0022
SER 6040.0018
VAL 6050.0015
PHE 6060.0013
ASN 6070.0016
ASN 6080.0009
GLN 6090.0010
VAL 6100.0016
SER 6110.0018
LEU 6120.0013
LYS 6130.0015
SER 6140.0010
LEU 6150.0005
ASN 6160.0011
LEU 6170.0012
GLN 6180.0013
LYS 6190.0016
ASN 6200.0016
LEU 6210.0020
ILE 6220.0020
THR 6230.0020
SER 6240.0020
VAL 6250.0020
GLU 6260.0016
LYS 6270.0017
LYS 6280.0017
VAL 6290.0016
PHE 6300.0016
GLY 6310.0015
PRO 6320.0016
ALA 6330.0014
PHE 6340.0014
ARG 6350.0019
ASN 6360.0018
LEU 6370.0014
THR 6380.0017
GLU 6390.0016
LEU 6400.0012
ASP 6410.0017
MET 6420.0017
ARG 6430.0019
PHE 6440.0021
ASN 6450.0020
PRO 6460.0023
PHE 6470.0024
ASP 6480.0024
CYS 6490.0025
THR 6500.0025
CYS 6510.0025
GLU 6520.0024
SER 6530.0023
ILE 6540.0025
ALA 6550.0027
TRP 6560.0020
PHE 6570.0022
VAL 6580.0023
ASN 6590.0022
TRP 6600.0022
ILE 6610.0025
ASN 6620.0016
GLU 6630.0017
THR 6640.0024
HIS 6650.0025
THR 6660.0013
ASN 6670.0016
ILE 6680.0018
PRO 6690.0023
GLU 6700.0026
LEU 6710.0025
SER 6720.0025
SER 6730.0027
HIS 6740.0026
TYR 6750.0024
LEU 6760.0028
CYS 6770.0028
ASN 6780.0028
THR 6790.0027
PRO 6800.0027
PRO 6810.0030
HIS 6820.0030
TYR 6830.0030
HIS 6840.0031
GLY 6850.0031
PHE 6860.0030
PRO 6870.0029
VAL 6880.0028
ARG 6890.0028
LEU 6900.0028
PHE 6910.0025
ASP 6920.0030
THR 6930.0034
SER 6940.0038
SER 6950.0038
CYS 6960.0043
GLU 10.0050
ALA 20.0064
ALA 30.0053
ALA 40.0030
LYS 50.0043
MET 60.0053
GLN 70.0044
ARG 80.0031
LEU 90.0048
VAL 100.0058
LEU 110.0039
LEU 120.0033
LEU 130.0046
ALA 140.0049
ILE 150.0037
SER 160.0035
LEU 170.0044
LEU 180.0046
LEU 190.0028
TYR 200.0025
GLN 210.0055
ASP 220.0067
LEU 230.0055
PRO 240.0073
VAL 250.0047
ARG 260.0022
SER 270.0021
GLU 280.0024
PHE 290.0034
GLU 300.0037
LEU 310.0029
ASP 320.0025
ARG 330.0021
ILE 340.0020
CYS 350.0018
GLY 360.0054
TYR 370.0069
GLY 380.0033
THR 390.0047
ALA 400.0016
ARG 410.0006
CYS 420.0006
ARG 430.0009
LYS 440.0011
LYS 450.0009
CYS 460.0010
ARG 470.0017
SER 480.0022
GLN 490.0026
GLU 500.0020
TYR 510.0017
ARG 520.0011
ILE 530.0012
GLY 540.0010
ARG 550.0009
CYS 560.0012
PRO 570.0017
ASN 580.0016
THR 590.0012
TYR 600.0008
ALA 610.0003
CYS 620.0003
CYS 630.0010
LEU 640.0017
ARG 650.0026
LYS 660.0050
TRP 670.0062
ASP 680.0047
GLU 690.0053
SER 700.0045
LEU 710.0052
LEU 720.0061
ASN 730.0048
ARG 740.0040
THR 750.0056
LYS 760.0055
PRO 770.0036
GLU 780.0033
ALA 790.0026
ALA 800.0032
ALA 810.0162
LYS 820.0185
LYS 830.0135
GLU 840.0131
MET 850.0109
ASN 860.0072
LEU 870.0062
SER 880.0042
VAL 890.0036
GLY 900.0037
LEU 910.0075
GLY 920.0128
GLY 930.0199
GLY 940.0181
SER 950.0143
ASN 960.0064
LEU 970.0064
SER 980.0068
VAL 990.0083
GLY 1000.0107
LEU 1010.0141
GLY 1020.0160
GLU 1030.0181
ILE 1040.0123
GLY 1050.0165
GLY 1060.0252
GLY 1070.0227
SER 1080.0249
LYS 1090.0163
LEU 1100.0182
LEU 1110.0123
ASP 1120.0121
ILE 1130.0101
ASN 1140.0107
LEU 1150.0093
GLY 1160.0076
ARG 1170.0172
GLY 1180.0132
GLY 1190.0119
GLY 1200.0039
SER 1210.0077
MET 1220.0067
VAL 1230.0022
ASP 1240.0040
LEU 1250.0054
THR 1260.0087
PHE 1270.0115
GLY 1280.0150
GLY 1290.0172
VAL 1300.0198
GLY 1310.0167
GLY 1320.0146
GLY 1330.0092
SER 1340.0113
THR 1350.0077
PHE 1360.0076
THR 1370.0086
PHE 1380.0067
PHE 1390.0088
PRO 1400.0077
LEU 1410.0082
VAL 1420.0118
ILE 1430.0109
GLY 1440.0158
GLY 1450.0151
GLY 1460.0026
SER 1470.0039
ASP 1480.0051
ALA 1490.0073
MET 1500.0067
TYR 1510.0077
LEU 1520.0079
GLY 1530.0091
PHE 1540.0105
ALA 1550.0127
ALA 1560.0169
GLY 1570.0146
GLY 1580.0123
GLY 1590.0073
SER 1600.0029
ALA 1610.0051
GLY 1620.0068
GLY 1630.0081
GLU 1640.0102
ASN 1650.0067
HIS 1660.0061
VAL 1670.0043
ALA 1680.0047
PHE 1690.0079
GLY 1700.0118
PRO 1710.0466
GLY 1720.0492
PRO 1730.0492
GLY 1740.0289
VAL 1750.0142
ASP 1760.0080
LEU 1770.0071
THR 1780.0053
PHE 1790.0058
GLY 1800.0053
GLY 1810.0070
VAL 1820.0077
GLN 1830.0079
PHE 1840.0088
ALA 1850.0091
MET 1860.0138
VAL 1870.0127
ASN 1880.0114
ASN 1890.0235
GLY 1900.0187
PRO 1910.0471
GLY 1920.0284
PRO 1930.0084
GLY 1940.0142
GLU 1950.0276
SER 1960.0447
PHE 1970.0347
THR 1980.0186
ALA 1990.0140
GLN 2000.0170
PRO 2010.0131
ALA 2020.0145
ASP 2030.0155
MET 2040.0345
GLN 2050.0362
ALA 2060.0335
GLY 2070.0233
ILE 2080.0183
LYS 2090.0179
GLY 2100.0190
PRO 2110.0242
GLY 2120.0204
PRO 2130.0183
GLY 2140.0164
GLY 2150.0172
SER 2160.0422
ILE 2170.0360
GLN 2180.0342
VAL 2190.0390
ILE 2200.0385
ASN 2210.0436
GLY 2220.0319
SER 2230.0291
THR 2240.0448
ILE 2250.0438
GLY 2260.0410
THR 2270.0348
GLY 2280.0488
SER 2290.0608
LYS 2300.0312
LYS 2310.0208
THR 2320.0216
ILE 2330.0259
LEU 2340.0273
ILE 2350.0328
TYR 2360.0300
SER 2370.0344
ILE 2380.0267
ILE 2390.0336
GLY 2400.0302
VAL 2410.0198
LYS 2420.0374
LYS 2430.0395
GLY 2440.0704
THR 2450.0753
LEU 2460.0257
ALA 2470.0295
TRP 2480.0240
ALA 2490.0366
ARG 2500.0392
THR 2510.0233
GLY 2520.0204
PHE 2530.0124
SER 2540.0171
PRO 2550.0191
ALA 2560.0370
LYS 2570.0263
LYS 2580.0271
LEU 2590.0352
ASN 2600.0391
ALA 2610.0674
GLY 2620.0498
VAL 2630.0450
VAL 2640.0272
ARG 2650.0266
VAL 2660.0218
PHE 2670.0213
PHE 2680.0225
LEU 2690.0220
ASN 2700.0216
GLN 2710.0103
LYS 2720.0284
LYS 2730.0260
ALA 2740.0195
LYS 2750.0178
ASP 2760.0108
VAL 2770.0254
LEU 2780.0360
ARG 2790.0302
LYS 2800.0196
THR 2810.0159
SER 2820.0088
ARG 2830.0131
PRO 2840.0325
MET 2850.0348
VAL 2860.0409
ASP 2870.0282
LEU 2880.0123
THR 2890.0045
PHE 2900.0197
GLY 2910.0123
GLY 2920.0326

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.