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***  TLR_3_simulation  ***

<R2> analysis for 2608260340483950756

---  normal mode 78  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0988
THR 260.0026
LYS 270.0028
CYS 280.0031
THR 290.0035
VAL 300.0039
SER 310.0061
HIS 320.0063
GLU 330.0045
VAL 340.0045
ALA 350.0035
ASP 360.0034
CYS 370.0033
SER 380.0032
HIS 390.0031
LEU 400.0030
LYS 410.0046
LEU 420.0045
THR 430.0044
GLN 440.0043
VAL 450.0043
PRO 460.0052
ASP 470.0051
ASP 480.0057
LEU 490.0052
PRO 500.0050
THR 510.0048
ASN 520.0044
ILE 530.0041
THR 540.0041
VAL 550.0040
LEU 560.0035
ASN 570.0036
LEU 580.0036
THR 590.0037
HIS 600.0037
ASN 610.0052
GLN 620.0052
LEU 630.0044
ARG 640.0045
ARG 650.0037
LEU 660.0044
PRO 670.0041
ALA 680.0032
ALA 690.0035
ASN 700.0041
PHE 710.0036
THR 720.0036
ARG 730.0042
TYR 740.0039
SER 750.0035
GLN 760.0039
LEU 770.0037
THR 780.0035
SER 790.0035
LEU 800.0037
ASP 810.0035
VAL 820.0037
GLY 830.0043
PHE 840.0051
ASN 850.0051
THR 860.0063
ILE 870.0055
SER 880.0058
LYS 890.0052
LEU 900.0043
GLU 910.0044
PRO 920.0037
GLU 930.0031
LEU 940.0030
CYS 950.0023
GLN 960.0021
LYS 970.0022
LEU 980.0023
PRO 990.0020
MET 1000.0023
LEU 1010.0021
LYS 1020.0021
VAL 1030.0027
LEU 1040.0028
ASN 1050.0036
LEU 1060.0040
GLN 1070.0046
HIS 1080.0057
ASN 1090.0060
GLU 1100.0063
LEU 1110.0059
SER 1120.0062
GLN 1130.0062
LEU 1140.0050
SER 1150.0055
ASP 1160.0054
LYS 1170.0055
THR 1180.0046
PHE 1190.0031
ALA 1200.0039
PHE 1210.0029
CYS 1220.0019
THR 1230.0022
ASN 1240.0016
LEU 1250.0010
THR 1260.0018
GLU 1270.0019
LEU 1280.0017
HIS 1290.0027
LEU 1300.0031
MET 1310.0041
SER 1320.0051
ASN 1330.0051
SER 1340.0053
ILE 1350.0044
GLN 1360.0041
LYS 1370.0038
ILE 1380.0034
LYS 1390.0045
ASN 1400.0049
ASN 1410.0043
PRO 1420.0036
PHE 1430.0028
VAL 1440.0038
LYS 1450.0036
GLN 1460.0026
LYS 1470.0033
ASN 1480.0029
LEU 1490.0021
ILE 1500.0025
THR 1510.0021
LEU 1520.0014
ASP 1530.0019
LEU 1540.0017
SER 1550.0026
HIS 1560.0038
ASN 1570.0031
GLY 1580.0026
LEU 1590.0013
SER 1600.0009
SER 1610.0025
THR 1620.0025
LYS 1630.0022
LEU 1640.0022
GLY 1650.0027
THR 1660.0037
GLN 1670.0041
VAL 1680.0041
GLN 1690.0035
LEU 1700.0029
GLU 1710.0036
ASN 1720.0034
LEU 1730.0028
GLN 1740.0030
GLU 1750.0026
LEU 1760.0024
LEU 1770.0027
LEU 1780.0026
SER 1790.0034
ASN 1800.0037
ASN 1810.0037
LYS 1820.0039
ILE 1830.0036
GLN 1840.0044
ALA 1850.0044
LEU 1860.0042
LYS 1870.0041
SER 1880.0037
GLU 1890.0032
GLU 1900.0031
LEU 1910.0029
ASP 1920.0027
ILE 1930.0026
PHE 1940.0026
ALA 1950.0030
ASN 1960.0030
SER 1970.0027
SER 1980.0028
LEU 1990.0026
LYS 2000.0027
LYS 2010.0023
LEU 2020.0027
GLU 2030.0031
LEU 2040.0036
SER 2050.0039
SER 2060.0049
ASN 2070.0049
GLN 2080.0058
ILE 2090.0054
LYS 2100.0063
GLU 2110.0062
PHE 2120.0053
SER 2130.0058
PRO 2140.0058
GLY 2150.0050
CYS 2160.0043
PHE 2170.0034
HIS 2180.0036
ALA 2190.0033
ILE 2200.0027
GLY 2210.0019
ARG 2220.0018
LEU 2230.0017
PHE 2240.0016
GLY 2250.0018
LEU 2260.0017
PHE 2270.0025
LEU 2280.0032
ASN 2290.0036
ASN 2300.0046
VAL 2310.0047
GLN 2320.0054
LEU 2330.0047
GLY 2340.0046
PRO 2350.0040
SER 2360.0054
LEU 2370.0051
THR 2380.0036
GLU 2390.0041
LYS 2400.0049
LEU 2410.0040
CYS 2420.0034
LEU 2430.0046
GLU 2440.0044
LEU 2450.0032
ALA 2460.0041
ASN 2470.0045
THR 2480.0033
SER 2490.0026
ILE 2500.0017
ARG 2510.0023
ASN 2520.0018
LEU 2530.0008
SER 2540.0016
LEU 2550.0018
SER 2560.0028
ASN 2570.0039
SER 2580.0032
GLN 2590.0038
LEU 2600.0025
SER 2610.0027
THR 2620.0019
THR 2630.0011
SER 2640.0007
ASN 2650.0013
THR 2660.0030
THR 2670.0022
PHE 2680.0019
LEU 2690.0033
GLY 2700.0037
LEU 2710.0030
LYS 2720.0046
TRP 2730.0052
THR 2740.0040
ASN 2750.0045
LEU 2760.0034
THR 2770.0041
MET 2780.0035
LEU 2790.0025
ASP 2800.0026
LEU 2810.0027
SER 2820.0037
TYR 2830.0040
ASN 2840.0031
ASN 2850.0037
LEU 2860.0031
ASN 2870.0031
VAL 2880.0027
VAL 2890.0026
GLY 2900.0022
ASN 2910.0023
ASP 2920.0023
SER 2930.0020
PHE 2940.0025
ALA 2950.0028
TRP 2960.0029
LEU 2970.0032
PRO 2980.0045
GLN 2990.0047
LEU 3000.0041
GLU 3010.0046
TYR 3020.0045
PHE 3030.0040
PHE 3040.0039
LEU 3050.0037
GLU 3060.0045
TYR 3070.0044
ASN 3080.0039
ASN 3090.0039
ILE 3100.0037
GLN 3110.0035
HIS 3120.0035
LEU 3130.0035
PHE 3140.0033
SER 3150.0034
HIS 3160.0032
SER 3170.0031
LEU 3180.0032
HIS 3190.0032
GLY 3200.0033
LEU 3210.0034
PHE 3220.0035
ASN 3230.0039
VAL 3240.0039
ARG 3250.0042
TYR 3260.0042
LEU 3270.0038
ASN 3280.0038
LEU 3290.0037
LYS 3300.0039
ARG 3310.0038
SER 3320.0036
PHE 3330.0036
THR 3340.0035
LYS 3350.0037
GLN 3360.0025
SER 3370.0028
ILE 3380.0032
SER 3390.0039
LEU 3400.0045
ALA 3410.0038
SER 3420.0032
LEU 3430.0030
PRO 3440.0026
LYS 3450.0029
ILE 3460.0025
ASP 3470.0027
ASP 3480.0027
PHE 3490.0027
SER 3500.0026
PHE 3510.0025
GLN 3520.0025
TRP 3530.0029
LEU 3540.0028
LYS 3550.0026
CYS 3560.0023
LEU 3570.0023
GLU 3580.0025
HIS 3590.0029
LEU 3600.0027
ASN 3610.0026
MET 3620.0024
GLU 3630.0028
ASP 3640.0029
ASN 3650.0025
ASP 3660.0028
ILE 3670.0025
PRO 3680.0028
GLY 3690.0028
ILE 3700.0024
LYS 3710.0020
SER 3720.0025
ASN 3730.0021
MET 3740.0017
PHE 3750.0019
THR 3760.0019
GLY 3770.0022
LEU 3780.0018
ILE 3790.0023
ASN 3800.0019
LEU 3810.0023
LYS 3820.0028
TYR 3830.0029
LEU 3840.0028
SER 3850.0031
LEU 3860.0032
SER 3870.0036
ASN 3880.0036
SER 3890.0031
PHE 3900.0034
THR 3910.0056
SER 3920.0060
LEU 3930.0056
ARG 3940.0067
THR 3950.0069
LEU 3960.0068
THR 3970.0072
ASN 3980.0069
GLU 3990.0064
THR 4000.0060
PHE 4010.0047
VAL 4020.0044
SER 4030.0035
LEU 4040.0038
ALA 4050.0045
HIS 4060.0040
SER 4070.0035
PRO 4080.0042
LEU 4090.0043
HIS 4100.0050
ILE 4110.0052
LEU 4120.0053
ASN 4130.0053
LEU 4140.0054
THR 4150.0054
LYS 4160.0055
ASN 4170.0057
LYS 4180.0065
ILE 4190.0066
SER 4200.0074
LYS 4210.0072
ILE 4220.0070
GLU 4230.0074
SER 4240.0073
ASP 4250.0073
ALA 4260.0068
PHE 4270.0065
SER 4280.0065
TRP 4290.0058
LEU 4300.0057
GLY 4310.0061
HIS 4320.0059
LEU 4330.0061
GLU 4340.0062
VAL 4350.0062
LEU 4360.0063
ASP 4370.0063
LEU 4380.0061
GLY 4390.0060
LEU 4400.0063
ASN 4410.0066
GLU 4420.0064
ILE 4430.0061
GLY 4440.0059
GLN 4450.0058
GLU 4460.0046
LEU 4470.0048
THR 4480.0051
GLY 4490.0053
GLN 4500.0062
GLU 4510.0063
TRP 4520.0061
ARG 4530.0064
GLY 4540.0065
LEU 4550.0062
GLU 4560.0060
ASN 4570.0061
ILE 4580.0059
PHE 4590.0058
GLU 4600.0057
ILE 4610.0057
TYR 4620.0059
LEU 4630.0052
SER 4640.0058
TYR 4650.0064
ASN 4660.0059
LYS 4670.0056
TYR 4680.0046
LEU 4690.0040
GLN 4700.0033
LEU 4710.0023
THR 4720.0026
ARG 4730.0036
ASN 4740.0044
SER 4750.0037
PHE 4760.0036
ALA 4770.0043
LEU 4780.0054
VAL 4790.0051
PRO 4800.0047
SER 4810.0047
LEU 4820.0040
GLN 4830.0039
ARG 4840.0038
LEU 4850.0034
MET 4860.0049
LEU 4870.0044
ARG 4880.0057
ARG 4890.0064
VAL 4900.0053
ALA 4910.0056
LEU 4920.0042
LYS 4930.0038
ASN 4940.0034
VAL 4950.0034
ASP 4960.0047
SER 4970.0043
SER 4980.0058
PRO 4990.0056
SER 5000.0039
PRO 5010.0026
PHE 5020.0024
GLN 5030.0036
PRO 5040.0040
LEU 5050.0033
ARG 5060.0043
ASN 5070.0033
LEU 5080.0032
THR 5090.0026
ILE 5100.0035
LEU 5110.0033
ASP 5120.0044
LEU 5130.0045
SER 5140.0061
ASN 5150.0077
ASN 5160.0075
ASN 5170.0086
ILE 5180.0070
ALA 5190.0081
ASN 5200.0072
ILE 5210.0053
ASN 5220.0057
ASP 5230.0060
ASP 5240.0055
MET 5250.0039
LEU 5260.0038
GLU 5270.0045
GLY 5280.0047
LEU 5290.0040
GLU 5300.0045
LYS 5310.0040
LEU 5320.0034
GLU 5330.0042
ILE 5340.0041
LEU 5350.0034
ASP 5360.0047
LEU 5370.0047
GLN 5380.0065
HIS 5390.0081
ASN 5400.0077
ASN 5410.0086
LEU 5420.0066
ALA 5430.0078
ARG 5440.0092
LEU 5450.0074
TRP 5460.0058
LYS 5470.0084
HIS 5480.0097
ALA 5490.0129
ASN 5500.0126
PRO 5510.0174
GLY 5520.0164
GLY 5530.0130
PRO 5540.0085
ILE 5550.0064
TYR 5560.0047
PHE 5570.0038
LEU 5580.0037
LYS 5590.0049
GLY 5600.0059
LEU 5610.0046
SER 5620.0058
HIS 5630.0060
LEU 5640.0050
HIS 5650.0059
ILE 5660.0060
LEU 5670.0043
ASN 5680.0049
LEU 5690.0040
GLU 5700.0054
SER 5710.0072
ASN 5720.0061
GLY 5730.0066
PHE 5740.0047
ASP 5750.0046
GLU 5760.0037
ILE 5770.0021
PRO 5780.0029
VAL 5790.0037
GLU 5800.0046
VAL 5810.0034
PHE 5820.0041
LYS 5830.0051
ASP 5840.0060
LEU 5850.0058
PHE 5860.0064
GLU 5870.0070
LEU 5880.0061
LYS 5890.0068
ILE 5900.0065
ILE 5910.0055
ASP 5920.0056
LEU 5930.0045
GLY 5940.0052
LEU 5950.0054
ASN 5960.0050
ASN 5970.0046
LEU 5980.0044
ASN 5990.0049
THR 6000.0048
LEU 6010.0043
PRO 6020.0043
ALA 6030.0044
SER 6040.0049
VAL 6050.0050
PHE 6060.0051
ASN 6070.0053
ASN 6080.0058
GLN 6090.0059
VAL 6100.0064
SER 6110.0069
LEU 6120.0063
LYS 6130.0066
SER 6140.0063
LEU 6150.0055
ASN 6160.0056
LEU 6170.0056
GLN 6180.0054
LYS 6190.0056
ASN 6200.0058
LEU 6210.0075
ILE 6220.0071
THR 6230.0076
SER 6240.0076
VAL 6250.0066
GLU 6260.0066
LYS 6270.0066
LYS 6280.0079
VAL 6290.0074
PHE 6300.0059
GLY 6310.0054
PRO 6320.0058
ALA 6330.0056
PHE 6340.0049
ARG 6350.0049
ASN 6360.0044
LEU 6370.0043
THR 6380.0044
GLU 6390.0046
LEU 6400.0043
ASP 6410.0040
MET 6420.0047
ARG 6430.0049
PHE 6440.0065
ASN 6450.0065
PRO 6460.0098
PHE 6470.0075
ASP 6480.0083
CYS 6490.0060
THR 6500.0064
CYS 6510.0065
GLU 6520.0099
SER 6530.0085
ILE 6540.0049
ALA 6550.0058
TRP 6560.0056
PHE 6570.0035
VAL 6580.0037
ASN 6590.0057
TRP 6600.0048
ILE 6610.0041
ASN 6620.0073
GLU 6630.0070
THR 6640.0043
HIS 6650.0048
THR 6660.0025
ASN 6670.0029
ILE 6680.0029
PRO 6690.0040
GLU 6700.0045
LEU 6710.0040
SER 6720.0066
SER 6730.0080
HIS 6740.0071
TYR 6750.0056
LEU 6760.0098
CYS 6770.0101
ASN 6780.0142
THR 6790.0147
PRO 6800.0141
PRO 6810.0193
HIS 6820.0168
TYR 6830.0135
HIS 6840.0175
GLY 6850.0176
PHE 6860.0136
PRO 6870.0104
VAL 6880.0062
ARG 6890.0064
LEU 6900.0095
PHE 6910.0079
ASP 6920.0092
THR 6930.0098
SER 6940.0148
SER 6950.0112
CYS 6960.0123
GLU 10.0123
ALA 20.0105
ALA 30.0069
ALA 40.0070
LYS 50.0075
MET 60.0054
GLN 70.0045
ARG 80.0047
LEU 90.0048
VAL 100.0039
LEU 110.0038
LEU 120.0039
LEU 130.0043
ALA 140.0045
ILE 150.0046
SER 160.0062
LEU 170.0074
LEU 180.0074
LEU 190.0088
TYR 200.0103
GLN 210.0131
ASP 220.0135
LEU 230.0158
PRO 240.0178
VAL 250.0180
ARG 260.0138
SER 270.0087
GLU 280.0072
PHE 290.0052
GLU 300.0038
LEU 310.0048
ASP 320.0037
ARG 330.0027
ILE 340.0047
CYS 350.0051
GLY 360.0133
TYR 370.0189
GLY 380.0149
THR 390.0100
ALA 400.0023
ARG 410.0022
CYS 420.0021
ARG 430.0007
LYS 440.0007
LYS 450.0020
CYS 460.0046
ARG 470.0068
SER 480.0098
GLN 490.0092
GLU 500.0069
TYR 510.0075
ARG 520.0058
ILE 530.0073
GLY 540.0064
ARG 550.0052
CYS 560.0040
PRO 570.0051
ASN 580.0043
THR 590.0039
TYR 600.0026
ALA 610.0029
CYS 620.0034
CYS 630.0033
LEU 640.0045
ARG 650.0057
LYS 660.0113
TRP 670.0096
ASP 680.0064
GLU 690.0048
SER 700.0046
LEU 710.0085
LEU 720.0106
ASN 730.0091
ARG 740.0104
THR 750.0142
LYS 760.0145
PRO 770.0130
GLU 780.0154
ALA 790.0126
ALA 800.0099
ALA 810.0153
LYS 820.0139
LYS 830.0124
GLU 840.0106
MET 850.0094
ASN 860.0054
LEU 870.0051
SER 880.0044
VAL 890.0054
GLY 900.0084
LEU 910.0126
GLY 920.0280
GLY 930.0444
GLY 940.0440
SER 950.0305
ASN 960.0099
LEU 970.0061
SER 980.0019
VAL 990.0035
GLY 1000.0069
LEU 1010.0099
GLY 1020.0104
GLU 1030.0077
ILE 1040.0044
GLY 1050.0047
GLY 1060.0172
GLY 1070.0154
SER 1080.0134
LYS 1090.0101
LEU 1100.0094
LEU 1110.0083
ASP 1120.0086
ILE 1130.0076
ASN 1140.0084
LEU 1150.0076
GLY 1160.0085
ARG 1170.0209
GLY 1180.0192
GLY 1190.0177
GLY 1200.0088
SER 1210.0056
MET 1220.0057
VAL 1230.0050
ASP 1240.0048
LEU 1250.0044
THR 1260.0039
PHE 1270.0047
GLY 1280.0066
GLY 1290.0083
VAL 1300.0095
GLY 1310.0066
GLY 1320.0047
GLY 1330.0056
SER 1340.0037
THR 1350.0041
PHE 1360.0045
THR 1370.0050
PHE 1380.0049
PHE 1390.0063
PRO 1400.0070
LEU 1410.0111
VAL 1420.0301
ILE 1430.0342
GLY 1440.0540
GLY 1450.0630
GLY 1460.0428
SER 1470.0296
ASP 1480.0146
ALA 1490.0151
MET 1500.0094
TYR 1510.0081
LEU 1520.0061
GLY 1530.0058
PHE 1540.0041
ALA 1550.0039
ALA 1560.0042
GLY 1570.0036
GLY 1580.0048
GLY 1590.0053
SER 1600.0062
ALA 1610.0056
GLY 1620.0054
GLY 1630.0060
GLU 1640.0051
ASN 1650.0030
HIS 1660.0018
VAL 1670.0025
ALA 1680.0031
PHE 1690.0046
GLY 1700.0048
PRO 1710.0111
GLY 1720.0112
PRO 1730.0105
GLY 1740.0058
VAL 1750.0031
ASP 1760.0014
LEU 1770.0014
THR 1780.0038
PHE 1790.0059
GLY 1800.0092
GLY 1810.0123
VAL 1820.0107
GLN 1830.0072
PHE 1840.0051
ALA 1850.0028
MET 1860.0068
VAL 1870.0076
ASN 1880.0072
ASN 1890.0101
GLY 1900.0148
PRO 1910.0142
GLY 1920.0122
PRO 1930.0214
GLY 1940.0190
GLU 1950.0097
SER 1960.0221
PHE 1970.0163
THR 1980.0139
ALA 1990.0105
GLN 2000.0096
PRO 2010.0186
ALA 2020.0208
ASP 2030.0268
MET 2040.0474
GLN 2050.0552
ALA 2060.0330
GLY 2070.0262
ILE 2080.0564
LYS 2090.0406
GLY 2100.0988
PRO 2110.0650
GLY 2120.0307
PRO 2130.0088
GLY 2140.0106
GLY 2150.0396
SER 2160.0487
ILE 2170.0176
GLN 2180.0355
VAL 2190.0089
ILE 2200.0328
ASN 2210.0362
GLY 2220.0298
SER 2230.0546
THR 2240.0610
ILE 2250.0535
GLY 2260.0244
THR 2270.0141
GLY 2280.0345
SER 2290.0605
LYS 2300.0467
LYS 2310.0254
THR 2320.0200
ILE 2330.0160
LEU 2340.0048
ILE 2350.0092
TYR 2360.0081
SER 2370.0107
ILE 2380.0094
ILE 2390.0089
GLY 2400.0116
VAL 2410.0156
LYS 2420.0172
LYS 2430.0177
GLY 2440.0158
THR 2450.0162
LEU 2460.0096
ALA 2470.0065
TRP 2480.0066
ALA 2490.0147
ARG 2500.0195
THR 2510.0356
GLY 2520.0399
PHE 2530.0224
SER 2540.0282
PRO 2550.0188
ALA 2560.0348
LYS 2570.0488
LYS 2580.0331
LEU 2590.0110
ASN 2600.0088
ALA 2610.0466
GLY 2620.0326
VAL 2630.0320
VAL 2640.0358
ARG 2650.0194
VAL 2660.0172
PHE 2670.0140
PHE 2680.0071
LEU 2690.0079
ASN 2700.0109
GLN 2710.0135
LYS 2720.0105
LYS 2730.0056
ALA 2740.0074
LYS 2750.0065
ASP 2760.0063
VAL 2770.0038
LEU 2780.0121
ARG 2790.0153
LYS 2800.0114
THR 2810.0038
SER 2820.0086
ARG 2830.0065
PRO 2840.0144
MET 2850.0170
VAL 2860.0098
ASP 2870.0088
LEU 2880.0064
THR 2890.0054
PHE 2900.0027
GLY 2910.0039
GLY 2920.0085

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.