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***  TLR_3_simulation  ***

<R2> analysis for 2608260340483950756

---  normal mode 80  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0815
THR 260.0093
LYS 270.0065
CYS 280.0040
THR 290.0032
VAL 300.0004
SER 310.0028
HIS 320.0044
GLU 330.0034
VAL 340.0035
ALA 350.0026
ASP 360.0048
CYS 370.0049
SER 380.0075
HIS 390.0100
LEU 400.0093
LYS 410.0082
LEU 420.0067
THR 430.0062
GLN 440.0071
VAL 450.0059
PRO 460.0060
ASP 470.0074
ASP 480.0076
LEU 490.0056
PRO 500.0055
THR 510.0053
ASN 520.0046
ILE 530.0034
THR 540.0039
VAL 550.0034
LEU 560.0021
ASN 570.0036
LEU 580.0032
THR 590.0054
HIS 600.0070
ASN 610.0044
GLN 620.0037
LEU 630.0034
ARG 640.0044
ARG 650.0062
LEU 660.0057
PRO 670.0073
ALA 680.0082
ALA 690.0091
ASN 700.0078
PHE 710.0067
THR 720.0079
ARG 730.0074
TYR 740.0060
SER 750.0064
GLN 760.0041
LEU 770.0033
THR 780.0032
SER 790.0025
LEU 800.0023
ASP 810.0020
VAL 820.0013
GLY 830.0024
PHE 840.0023
ASN 850.0010
THR 860.0026
ILE 870.0039
SER 880.0061
LYS 890.0072
LEU 900.0063
GLU 910.0076
PRO 920.0078
GLU 930.0081
LEU 940.0069
CYS 950.0065
GLN 960.0073
LYS 970.0071
LEU 980.0057
PRO 990.0055
MET 1000.0042
LEU 1010.0033
LYS 1020.0025
VAL 1030.0015
LEU 1040.0017
ASN 1050.0019
LEU 1060.0024
GLN 1070.0036
HIS 1080.0043
ASN 1090.0041
GLU 1100.0055
LEU 1110.0052
SER 1120.0067
GLN 1130.0070
LEU 1140.0062
SER 1150.0069
ASP 1160.0072
LYS 1170.0073
THR 1180.0062
PHE 1190.0053
ALA 1200.0062
PHE 1210.0063
CYS 1220.0049
THR 1230.0043
ASN 1240.0036
LEU 1250.0030
THR 1260.0033
GLU 1270.0031
LEU 1280.0027
HIS 1290.0034
LEU 1300.0037
MET 1310.0052
SER 1320.0061
ASN 1330.0055
SER 1340.0067
ILE 1350.0061
GLN 1360.0057
LYS 1370.0058
ILE 1380.0050
LYS 1390.0061
ASN 1400.0065
ASN 1410.0048
PRO 1420.0044
PHE 1430.0038
VAL 1440.0039
LYS 1450.0042
GLN 1460.0035
LYS 1470.0037
ASN 1480.0041
LEU 1490.0039
ILE 1500.0048
THR 1510.0046
LEU 1520.0039
ASP 1530.0047
LEU 1540.0046
SER 1550.0058
HIS 1560.0068
ASN 1570.0062
GLY 1580.0063
LEU 1590.0053
SER 1600.0054
SER 1610.0040
THR 1620.0037
LYS 1630.0031
LEU 1640.0033
GLY 1650.0030
THR 1660.0042
GLN 1670.0035
VAL 1680.0036
GLN 1690.0036
LEU 1700.0041
GLU 1710.0041
ASN 1720.0048
LEU 1730.0047
GLN 1740.0054
GLU 1750.0055
LEU 1760.0044
LEU 1770.0050
LEU 1780.0047
SER 1790.0058
ASN 1800.0065
ASN 1810.0056
LYS 1820.0051
ILE 1830.0038
GLN 1840.0033
ALA 1850.0025
LEU 1860.0025
LYS 1870.0020
SER 1880.0019
GLU 1890.0020
GLU 1900.0025
LEU 1910.0030
ASP 1920.0028
ILE 1930.0031
PHE 1940.0036
ALA 1950.0034
ASN 1960.0040
SER 1970.0042
SER 1980.0044
LEU 1990.0045
LYS 2000.0050
LYS 2010.0045
LEU 2020.0041
GLU 2030.0045
LEU 2040.0042
SER 2050.0049
SER 2060.0044
ASN 2070.0043
GLN 2080.0038
ILE 2090.0032
LYS 2100.0031
GLU 2110.0032
PHE 2120.0027
SER 2130.0023
PRO 2140.0016
GLY 2150.0017
CYS 2160.0027
PHE 2170.0028
HIS 2180.0025
ALA 2190.0031
ILE 2200.0036
GLY 2210.0036
ARG 2220.0033
LEU 2230.0033
PHE 2240.0033
GLY 2250.0037
LEU 2260.0026
PHE 2270.0029
LEU 2280.0030
ASN 2290.0033
ASN 2300.0035
VAL 2310.0034
GLN 2320.0034
LEU 2330.0033
GLY 2340.0032
PRO 2350.0033
SER 2360.0039
LEU 2370.0037
THR 2380.0034
GLU 2390.0036
LYS 2400.0038
LEU 2410.0033
CYS 2420.0031
LEU 2430.0029
GLU 2440.0030
LEU 2450.0029
ALA 2460.0033
ASN 2470.0030
THR 2480.0031
SER 2490.0028
ILE 2500.0028
ARG 2510.0030
ASN 2520.0027
LEU 2530.0026
SER 2540.0023
LEU 2550.0022
SER 2560.0018
ASN 2570.0022
SER 2580.0028
GLN 2590.0032
LEU 2600.0032
SER 2610.0039
THR 2620.0043
THR 2630.0046
SER 2640.0054
ASN 2650.0060
THR 2660.0050
THR 2670.0048
PHE 2680.0044
LEU 2690.0045
GLY 2700.0046
LEU 2710.0041
LYS 2720.0041
TRP 2730.0041
THR 2740.0040
ASN 2750.0039
LEU 2760.0046
THR 2770.0044
MET 2780.0038
LEU 2790.0032
ASP 2800.0027
LEU 2810.0037
SER 2820.0031
TYR 2830.0032
ASN 2840.0035
ASN 2850.0030
LEU 2860.0044
ASN 2870.0042
VAL 2880.0046
VAL 2890.0050
GLY 2900.0061
ASN 2910.0062
ASP 2920.0063
SER 2930.0059
PHE 2940.0055
ALA 2950.0063
TRP 2960.0053
LEU 2970.0052
PRO 2980.0054
GLN 2990.0055
LEU 3000.0051
GLU 3010.0056
TYR 3020.0049
PHE 3030.0040
PHE 3040.0034
LEU 3050.0027
GLU 3060.0031
TYR 3070.0029
ASN 3080.0032
ASN 3090.0032
ILE 3100.0043
GLN 3110.0048
HIS 3120.0051
LEU 3130.0051
PHE 3140.0061
SER 3150.0070
HIS 3160.0067
SER 3170.0060
LEU 3180.0055
HIS 3190.0064
GLY 3200.0068
LEU 3210.0059
PHE 3220.0062
ASN 3230.0063
VAL 3240.0054
ARG 3250.0051
TYR 3260.0041
LEU 3270.0033
ASN 3280.0025
LEU 3290.0021
LYS 3300.0023
ARG 3310.0036
SER 3320.0031
PHE 3330.0038
THR 3340.0037
LYS 3350.0058
GLN 3360.0088
SER 3370.0112
ILE 3380.0154
SER 3390.0169
LEU 3400.0125
ALA 3410.0100
SER 3420.0074
LEU 3430.0063
PRO 3440.0044
LYS 3450.0057
ILE 3460.0053
ASP 3470.0060
ASP 3480.0062
PHE 3490.0063
SER 3500.0058
PHE 3510.0054
GLN 3520.0059
TRP 3530.0063
LEU 3540.0056
LYS 3550.0058
CYS 3560.0055
LEU 3570.0047
GLU 3580.0042
HIS 3590.0037
LEU 3600.0033
ASN 3610.0026
MET 3620.0022
GLU 3630.0018
ASP 3640.0020
ASN 3650.0022
ASP 3660.0031
ILE 3670.0029
PRO 3680.0022
GLY 3690.0028
ILE 3700.0033
LYS 3710.0057
SER 3720.0056
ASN 3730.0056
MET 3740.0054
PHE 3750.0051
THR 3760.0056
GLY 3770.0055
LEU 3780.0048
ILE 3790.0045
ASN 3800.0041
LEU 3810.0033
LYS 3820.0026
TYR 3830.0027
LEU 3840.0030
SER 3850.0030
LEU 3860.0027
SER 3870.0031
ASN 3880.0034
SER 3890.0030
PHE 3900.0032
THR 3910.0064
SER 3920.0076
LEU 3930.0068
ARG 3940.0091
THR 3950.0091
LEU 3960.0083
THR 3970.0095
ASN 3980.0093
GLU 3990.0095
THR 4000.0082
PHE 4010.0061
VAL 4020.0066
SER 4030.0060
LEU 4040.0045
ALA 4050.0047
HIS 4060.0048
SER 4070.0036
PRO 4080.0022
LEU 4090.0020
HIS 4100.0008
ILE 4110.0016
LEU 4120.0026
ASN 4130.0037
LEU 4140.0046
THR 4150.0054
LYS 4160.0073
ASN 4170.0071
LYS 4180.0089
ILE 4190.0079
SER 4200.0094
LYS 4210.0090
ILE 4220.0075
GLU 4230.0087
SER 4240.0084
ASP 4250.0082
ALA 4260.0071
PHE 4270.0053
SER 4280.0065
TRP 4290.0062
LEU 4300.0041
GLY 4310.0050
HIS 4320.0033
LEU 4330.0016
GLU 4340.0019
VAL 4350.0019
LEU 4360.0017
ASP 4370.0036
LEU 4380.0043
GLY 4390.0055
LEU 4400.0075
ASN 4410.0082
GLU 4420.0091
ILE 4430.0075
GLY 4440.0081
GLN 4450.0070
GLU 4460.0052
LEU 4470.0037
THR 4480.0053
GLY 4490.0045
GLN 4500.0066
GLU 4510.0057
TRP 4520.0041
ARG 4530.0066
GLY 4540.0068
LEU 4550.0043
GLU 4560.0063
ASN 4570.0052
ILE 4580.0036
PHE 4590.0049
GLU 4600.0041
ILE 4610.0024
TYR 4620.0037
LEU 4630.0033
SER 4640.0053
TYR 4650.0069
ASN 4660.0066
LYS 4670.0077
TYR 4680.0061
LEU 4690.0037
GLN 4700.0027
LEU 4710.0010
THR 4720.0018
ARG 4730.0034
ASN 4740.0041
SER 4750.0024
PHE 4760.0031
ALA 4770.0054
LEU 4780.0052
VAL 4790.0043
PRO 4800.0066
SER 4810.0065
LEU 4820.0057
GLN 4830.0068
ARG 4840.0062
LEU 4850.0051
MET 4860.0048
LEU 4870.0042
ARG 4880.0057
ARG 4890.0059
VAL 4900.0043
ALA 4910.0054
LEU 4920.0041
LYS 4930.0030
ASN 4940.0022
VAL 4950.0036
ASP 4960.0044
SER 4970.0034
SER 4980.0043
PRO 4990.0050
SER 5000.0047
PRO 5010.0041
PHE 5020.0051
GLN 5030.0057
PRO 5040.0059
LEU 5050.0062
ARG 5060.0071
ASN 5070.0075
LEU 5080.0072
THR 5090.0073
ILE 5100.0071
LEU 5110.0058
ASP 5120.0057
LEU 5130.0055
SER 5140.0059
ASN 5150.0058
ASN 5160.0059
ASN 5170.0062
ILE 5180.0062
ALA 5190.0065
ASN 5200.0065
ILE 5210.0059
ASN 5220.0058
ASP 5230.0060
ASP 5240.0057
MET 5250.0056
LEU 5260.0053
GLU 5270.0052
GLY 5280.0055
LEU 5290.0055
GLU 5300.0049
LYS 5310.0052
LEU 5320.0051
GLU 5330.0049
ILE 5340.0052
LEU 5350.0048
ASP 5360.0047
LEU 5370.0050
GLN 5380.0049
HIS 5390.0055
ASN 5400.0059
ASN 5410.0067
LEU 5420.0060
ALA 5430.0060
ARG 5440.0071
LEU 5450.0067
TRP 5460.0051
LYS 5470.0063
HIS 5480.0079
ALA 5490.0098
ASN 5500.0105
PRO 5510.0156
GLY 5520.0154
GLY 5530.0120
PRO 5540.0079
ILE 5550.0066
TYR 5560.0050
PHE 5570.0050
LEU 5580.0038
LYS 5590.0040
GLY 5600.0037
LEU 5610.0026
SER 5620.0019
HIS 5630.0018
LEU 5640.0024
HIS 5650.0032
ILE 5660.0032
LEU 5670.0020
ASN 5680.0027
LEU 5690.0021
GLU 5700.0025
SER 5710.0040
ASN 5720.0037
GLY 5730.0034
PHE 5740.0019
ASP 5750.0011
GLU 5760.0014
ILE 5770.0016
PRO 5780.0031
VAL 5790.0042
GLU 5800.0042
VAL 5810.0022
PHE 5820.0025
LYS 5830.0038
ASP 5840.0035
LEU 5850.0027
PHE 5860.0042
GLU 5870.0040
LEU 5880.0038
LYS 5890.0052
ILE 5900.0052
ILE 5910.0037
ASP 5920.0037
LEU 5930.0030
GLY 5940.0036
LEU 5950.0032
ASN 5960.0035
ASN 5970.0037
LEU 5980.0040
ASN 5990.0053
THR 6000.0055
LEU 6010.0041
PRO 6020.0042
ALA 6030.0048
SER 6040.0055
VAL 6050.0052
PHE 6060.0053
ASN 6070.0061
ASN 6080.0056
GLN 6090.0057
VAL 6100.0069
SER 6110.0075
LEU 6120.0072
LYS 6130.0079
SER 6140.0074
LEU 6150.0065
ASN 6160.0066
LEU 6170.0064
GLN 6180.0063
LYS 6190.0062
ASN 6200.0061
LEU 6210.0081
ILE 6220.0076
THR 6230.0077
SER 6240.0075
VAL 6250.0068
GLU 6260.0065
LYS 6270.0063
LYS 6280.0070
VAL 6290.0071
PHE 6300.0064
GLY 6310.0063
PRO 6320.0068
ALA 6330.0067
PHE 6340.0072
ARG 6350.0079
ASN 6360.0082
LEU 6370.0079
THR 6380.0085
GLU 6390.0080
LEU 6400.0071
ASP 6410.0069
MET 6420.0067
ARG 6430.0068
PHE 6440.0075
ASN 6450.0072
PRO 6460.0097
PHE 6470.0072
ASP 6480.0066
CYS 6490.0040
THR 6500.0036
CYS 6510.0056
GLU 6520.0086
SER 6530.0078
ILE 6540.0049
ALA 6550.0051
TRP 6560.0050
PHE 6570.0040
VAL 6580.0024
ASN 6590.0036
TRP 6600.0036
ILE 6610.0026
ASN 6620.0039
GLU 6630.0072
THR 6640.0071
HIS 6650.0079
THR 6660.0049
ASN 6670.0051
ILE 6680.0052
PRO 6690.0063
GLU 6700.0064
LEU 6710.0040
SER 6720.0049
SER 6730.0072
HIS 6740.0075
TYR 6750.0058
LEU 6760.0091
CYS 6770.0085
ASN 6780.0120
THR 6790.0113
PRO 6800.0098
PRO 6810.0151
HIS 6820.0137
TYR 6830.0111
HIS 6840.0148
GLY 6850.0155
PHE 6860.0119
PRO 6870.0090
VAL 6880.0050
ARG 6890.0039
LEU 6900.0076
PHE 6910.0077
ASP 6920.0104
THR 6930.0103
SER 6940.0167
SER 6950.0149
CYS 6960.0138
GLU 10.0175
ALA 20.0200
ALA 30.0137
ALA 40.0075
LYS 50.0130
MET 60.0140
GLN 70.0103
ARG 80.0075
LEU 90.0132
VAL 100.0155
LEU 110.0096
LEU 120.0091
LEU 130.0140
ALA 140.0142
ILE 150.0104
SER 160.0136
LEU 170.0153
LEU 180.0142
LEU 190.0126
TYR 200.0136
GLN 210.0243
ASP 220.0259
LEU 230.0309
PRO 240.0403
VAL 250.0355
ARG 260.0306
SER 270.0268
GLU 280.0098
PHE 290.0215
GLU 300.0174
LEU 310.0045
ASP 320.0056
ARG 330.0096
ILE 340.0048
CYS 350.0107
GLY 360.0108
TYR 370.0121
GLY 380.0094
THR 390.0071
ALA 400.0074
ARG 410.0093
CYS 420.0097
ARG 430.0082
LYS 440.0089
LYS 450.0067
CYS 460.0066
ARG 470.0079
SER 480.0112
GLN 490.0101
GLU 500.0067
TYR 510.0047
ARG 520.0044
ILE 530.0065
GLY 540.0076
ARG 550.0091
CYS 560.0116
PRO 570.0141
ASN 580.0139
THR 590.0117
TYR 600.0104
ALA 610.0088
CYS 620.0073
CYS 630.0054
LEU 640.0058
ARG 650.0070
LYS 660.0166
TRP 670.0162
ASP 680.0157
GLU 690.0153
SER 700.0149
LEU 710.0154
LEU 720.0137
ASN 730.0104
ARG 740.0113
THR 750.0140
LYS 760.0134
PRO 770.0148
GLU 780.0136
ALA 790.0160
ALA 800.0226
ALA 810.0322
LYS 820.0272
LYS 830.0213
GLU 840.0159
MET 850.0100
ASN 860.0078
LEU 870.0027
SER 880.0039
VAL 890.0023
GLY 900.0015
LEU 910.0027
GLY 920.0042
GLY 930.0147
GLY 940.0233
SER 950.0187
ASN 960.0135
LEU 970.0125
SER 980.0121
VAL 990.0094
GLY 1000.0108
LEU 1010.0046
GLY 1020.0107
GLU 1030.0118
ILE 1040.0045
GLY 1050.0125
GLY 1060.0158
GLY 1070.0161
SER 1080.0176
LYS 1090.0167
LEU 1100.0180
LEU 1110.0222
ASP 1120.0284
ILE 1130.0224
ASN 1140.0318
LEU 1150.0272
GLY 1160.0482
ARG 1170.0639
GLY 1180.0770
GLY 1190.0594
GLY 1200.0252
SER 1210.0105
MET 1220.0099
VAL 1230.0078
ASP 1240.0070
LEU 1250.0053
THR 1260.0038
PHE 1270.0038
GLY 1280.0087
GLY 1290.0117
VAL 1300.0138
GLY 1310.0129
GLY 1320.0115
GLY 1330.0077
SER 1340.0068
THR 1350.0045
PHE 1360.0104
THR 1370.0102
PHE 1380.0105
PHE 1390.0104
PRO 1400.0109
LEU 1410.0126
VAL 1420.0349
ILE 1430.0438
GLY 1440.0666
GLY 1450.0815
GLY 1460.0199
SER 1470.0190
ASP 1480.0258
ALA 1490.0202
MET 1500.0193
TYR 1510.0064
LEU 1520.0091
GLY 1530.0074
PHE 1540.0105
ALA 1550.0094
ALA 1560.0114
GLY 1570.0084
GLY 1580.0063
GLY 1590.0036
SER 1600.0049
ALA 1610.0043
GLY 1620.0067
GLY 1630.0064
GLU 1640.0054
ASN 1650.0030
HIS 1660.0036
VAL 1670.0033
ALA 1680.0042
PHE 1690.0047
GLY 1700.0061
PRO 1710.0075
GLY 1720.0110
PRO 1730.0128
GLY 1740.0074
VAL 1750.0007
ASP 1760.0030
LEU 1770.0043
THR 1780.0039
PHE 1790.0056
GLY 1800.0057
GLY 1810.0106
VAL 1820.0126
GLN 1830.0106
PHE 1840.0106
ALA 1850.0101
MET 1860.0042
VAL 1870.0070
ASN 1880.0059
ASN 1890.0021
GLY 1900.0073
PRO 1910.0024
GLY 1920.0021
PRO 1930.0012
GLY 1940.0030
GLU 1950.0028
SER 1960.0097
PHE 1970.0047
THR 1980.0096
ALA 1990.0110
GLN 2000.0031
PRO 2010.0042
ALA 2020.0049
ASP 2030.0035
MET 2040.0045
GLN 2050.0064
ALA 2060.0115
GLY 2070.0187
ILE 2080.0188
LYS 2090.0238
GLY 2100.0325
PRO 2110.0206
GLY 2120.0126
PRO 2130.0139
GLY 2140.0211
GLY 2150.0233
SER 2160.0194
ILE 2170.0101
GLN 2180.0110
VAL 2190.0263
ILE 2200.0380
ASN 2210.0493
GLY 2220.0390
SER 2230.0173
THR 2240.0414
ILE 2250.0506
GLY 2260.0410
THR 2270.0214
GLY 2280.0260
SER 2290.0584
LYS 2300.0456
LYS 2310.0314
THR 2320.0274
ILE 2330.0191
LEU 2340.0106
ILE 2350.0101
TYR 2360.0107
SER 2370.0097
ILE 2380.0080
ILE 2390.0060
GLY 2400.0048
VAL 2410.0051
LYS 2420.0047
LYS 2430.0056
GLY 2440.0097
THR 2450.0101
LEU 2460.0082
ALA 2470.0059
TRP 2480.0096
ALA 2490.0098
ARG 2500.0146
THR 2510.0189
GLY 2520.0049
PHE 2530.0114
SER 2540.0123
PRO 2550.0028
ALA 2560.0135
LYS 2570.0133
LYS 2580.0126
LEU 2590.0107
ASN 2600.0114
ALA 2610.0516
GLY 2620.0375
VAL 2630.0316
VAL 2640.0397
ARG 2650.0222
VAL 2660.0157
PHE 2670.0162
PHE 2680.0154
LEU 2690.0175
ASN 2700.0181
GLN 2710.0142
LYS 2720.0162
LYS 2730.0162
ALA 2740.0128
LYS 2750.0044
ASP 2760.0056
VAL 2770.0113
LEU 2780.0237
ARG 2790.0233
LYS 2800.0096
THR 2810.0087
SER 2820.0089
ARG 2830.0049
PRO 2840.0081
MET 2850.0141
VAL 2860.0125
ASP 2870.0077
LEU 2880.0026
THR 2890.0046
PHE 2900.0106
GLY 2910.0056
GLY 2920.0125

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.