CNRS Nantes University US2B US2B
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***  TLR_3_simulation  ***

<R2> analysis for 2608260340483950756

---  normal mode 83  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0835
THR 260.0091
LYS 270.0092
CYS 280.0097
THR 290.0101
VAL 300.0103
SER 310.0088
HIS 320.0106
GLU 330.0105
VAL 340.0103
ALA 350.0088
ASP 360.0114
CYS 370.0111
SER 380.0115
HIS 390.0113
LEU 400.0107
LYS 410.0117
LEU 420.0089
THR 430.0073
GLN 440.0048
VAL 450.0044
PRO 460.0053
ASP 470.0045
ASP 480.0069
LEU 490.0084
PRO 500.0102
THR 510.0099
ASN 520.0121
ILE 530.0108
THR 540.0108
VAL 550.0104
LEU 560.0099
ASN 570.0105
LEU 580.0094
THR 590.0107
HIS 600.0111
ASN 610.0104
GLN 620.0093
LEU 630.0053
ARG 640.0057
ARG 650.0035
LEU 660.0025
PRO 670.0053
ALA 680.0081
ALA 690.0082
ASN 700.0051
PHE 710.0066
THR 720.0092
ARG 730.0095
TYR 740.0099
SER 750.0125
GLN 760.0124
LEU 770.0109
THR 780.0125
SER 790.0108
LEU 800.0081
ASP 810.0082
VAL 820.0061
GLY 830.0076
PHE 840.0082
ASN 850.0064
THR 860.0059
ILE 870.0026
SER 880.0052
LYS 890.0061
LEU 900.0060
GLU 910.0089
PRO 920.0111
GLU 930.0130
LEU 940.0107
CYS 950.0121
GLN 960.0147
LYS 970.0139
LEU 980.0132
PRO 990.0160
MET 1000.0161
LEU 1010.0123
LYS 1020.0128
VAL 1030.0108
LEU 1040.0082
ASN 1050.0066
LEU 1060.0037
GLN 1070.0040
HIS 1080.0034
ASN 1090.0016
GLU 1100.0019
LEU 1110.0030
SER 1120.0026
GLN 1130.0048
LEU 1140.0056
SER 1150.0079
ASP 1160.0083
LYS 1170.0105
THR 1180.0091
PHE 1190.0085
ALA 1200.0102
PHE 1210.0126
CYS 1220.0112
THR 1230.0125
ASN 1240.0130
LEU 1250.0105
THR 1260.0095
GLU 1270.0081
LEU 1280.0064
HIS 1290.0052
LEU 1300.0036
MET 1310.0028
SER 1320.0023
ASN 1330.0024
SER 1340.0021
ILE 1350.0023
GLN 1360.0043
LYS 1370.0049
ILE 1380.0053
LYS 1390.0069
ASN 1400.0077
ASN 1410.0057
PRO 1420.0062
PHE 1430.0042
VAL 1440.0035
LYS 1450.0059
GLN 1460.0053
LYS 1470.0042
ASN 1480.0062
LEU 1490.0059
ILE 1500.0068
THR 1510.0047
LEU 1520.0036
ASP 1530.0037
LEU 1540.0034
SER 1550.0033
HIS 1560.0049
ASN 1570.0052
GLY 1580.0060
LEU 1590.0051
SER 1600.0059
SER 1610.0064
THR 1620.0042
LYS 1630.0057
LEU 1640.0045
GLY 1650.0061
THR 1660.0088
GLN 1670.0079
VAL 1680.0070
GLN 1690.0039
LEU 1700.0030
GLU 1710.0056
ASN 1720.0063
LEU 1730.0048
GLN 1740.0067
GLU 1750.0056
LEU 1760.0026
LEU 1770.0031
LEU 1780.0025
SER 1790.0042
ASN 1800.0062
ASN 1810.0064
LYS 1820.0077
ILE 1830.0062
GLN 1840.0076
ALA 1850.0068
LEU 1860.0059
LYS 1870.0087
SER 1880.0100
GLU 1890.0115
GLU 1900.0083
LEU 1910.0069
ASP 1920.0100
ILE 1930.0080
PHE 1940.0076
ALA 1950.0114
ASN 1960.0118
SER 1970.0097
SER 1980.0108
LEU 1990.0085
LYS 2000.0105
LYS 2010.0078
LEU 2020.0050
GLU 2030.0050
LEU 2040.0035
SER 2050.0058
SER 2060.0080
ASN 2070.0065
GLN 2080.0077
ILE 2090.0058
LYS 2100.0074
GLU 2110.0070
PHE 2120.0051
SER 2130.0080
PRO 2140.0092
GLY 2150.0099
CYS 2160.0069
PHE 2170.0065
HIS 2180.0096
ALA 2190.0099
ILE 2200.0093
GLY 2210.0122
ARG 2220.0118
LEU 2230.0093
PHE 2240.0111
GLY 2250.0095
LEU 2260.0063
PHE 2270.0069
LEU 2280.0060
ASN 2290.0085
ASN 2300.0097
VAL 2310.0074
GLN 2320.0076
LEU 2330.0065
GLY 2340.0066
PRO 2350.0059
SER 2360.0051
LEU 2370.0044
THR 2380.0048
GLU 2390.0040
LYS 2400.0030
LEU 2410.0026
CYS 2420.0041
LEU 2430.0033
GLU 2440.0039
LEU 2450.0058
ALA 2460.0054
ASN 2470.0079
THR 2480.0078
SER 2490.0096
ILE 2500.0084
ARG 2510.0090
ASN 2520.0090
LEU 2530.0076
SER 2540.0084
LEU 2550.0079
SER 2560.0089
ASN 2570.0091
SER 2580.0085
GLN 2590.0084
LEU 2600.0076
SER 2610.0065
THR 2620.0064
THR 2630.0064
SER 2640.0065
ASN 2650.0065
THR 2660.0057
THR 2670.0060
PHE 2680.0062
LEU 2690.0057
GLY 2700.0054
LEU 2710.0058
LYS 2720.0054
TRP 2730.0054
THR 2740.0064
ASN 2750.0073
LEU 2760.0070
THR 2770.0077
MET 2780.0078
LEU 2790.0076
ASP 2800.0079
LEU 2810.0077
SER 2820.0076
TYR 2830.0078
ASN 2840.0080
ASN 2850.0075
LEU 2860.0044
ASN 2870.0043
VAL 2880.0048
VAL 2890.0045
GLY 2900.0054
ASN 2910.0054
ASP 2920.0055
SER 2930.0059
PHE 2940.0057
ALA 2950.0057
TRP 2960.0063
LEU 2970.0062
PRO 2980.0058
GLN 2990.0060
LEU 3000.0061
GLU 3010.0054
TYR 3020.0051
PHE 3030.0050
PHE 3040.0046
LEU 3050.0045
GLU 3060.0042
TYR 3070.0039
ASN 3080.0042
ASN 3090.0042
ILE 3100.0032
GLN 3110.0031
HIS 3120.0031
LEU 3130.0025
PHE 3140.0028
SER 3150.0025
HIS 3160.0036
SER 3170.0036
LEU 3180.0035
HIS 3190.0041
GLY 3200.0048
LEU 3210.0045
PHE 3220.0048
ASN 3230.0053
VAL 3240.0044
ARG 3250.0044
TYR 3260.0038
LEU 3270.0030
ASN 3280.0028
LEU 3290.0018
LYS 3300.0021
ARG 3310.0012
SER 3320.0017
PHE 3330.0019
THR 3340.0047
LYS 3350.0064
GLN 3360.0125
SER 3370.0162
ILE 3380.0260
SER 3390.0301
LEU 3400.0250
ALA 3410.0158
SER 3420.0132
LEU 3430.0096
PRO 3440.0072
LYS 3450.0099
ILE 3460.0049
ASP 3470.0047
ASP 3480.0048
PHE 3490.0047
SER 3500.0047
PHE 3510.0039
GLN 3520.0041
TRP 3530.0040
LEU 3540.0045
LYS 3550.0055
CYS 3560.0059
LEU 3570.0054
GLU 3580.0063
HIS 3590.0060
LEU 3600.0052
ASN 3610.0057
MET 3620.0050
GLU 3630.0055
ASP 3640.0054
ASN 3650.0046
ASP 3660.0040
ILE 3670.0046
PRO 3680.0059
GLY 3690.0066
ILE 3700.0069
LYS 3710.0061
SER 3720.0061
ASN 3730.0056
MET 3740.0057
PHE 3750.0060
THR 3760.0055
GLY 3770.0053
LEU 3780.0058
ILE 3790.0063
ASN 3800.0067
LEU 3810.0070
LYS 3820.0079
TYR 3830.0082
LEU 3840.0076
SER 3850.0081
LEU 3860.0078
SER 3870.0088
ASN 3880.0087
SER 3890.0076
PHE 3900.0072
THR 3910.0079
SER 3920.0081
LEU 3930.0071
ARG 3940.0084
THR 3950.0076
LEU 3960.0063
THR 3970.0049
ASN 3980.0030
GLU 3990.0036
THR 4000.0054
PHE 4010.0053
VAL 4020.0046
SER 4030.0056
LEU 4040.0061
ALA 4050.0054
HIS 4060.0058
SER 4070.0066
PRO 4080.0071
LEU 4090.0073
HIS 4100.0079
ILE 4110.0086
LEU 4120.0079
ASN 4130.0091
LEU 4140.0087
THR 4150.0104
LYS 4160.0119
ASN 4170.0103
LYS 4180.0110
ILE 4190.0089
SER 4200.0095
LYS 4210.0080
ILE 4220.0058
GLU 4230.0051
SER 4240.0037
ASP 4250.0020
ALA 4260.0029
PHE 4270.0030
SER 4280.0023
TRP 4290.0036
LEU 4300.0047
GLY 4310.0043
HIS 4320.0060
LEU 4330.0058
GLU 4340.0067
VAL 4350.0070
LEU 4360.0062
ASP 4370.0078
LEU 4380.0074
GLY 4390.0092
LEU 4400.0112
ASN 4410.0112
GLU 4420.0114
ILE 4430.0089
GLY 4440.0095
GLN 4450.0080
GLU 4460.0072
LEU 4470.0050
THR 4480.0063
GLY 4490.0046
GLN 4500.0050
GLU 4510.0025
TRP 4520.0014
ARG 4530.0030
GLY 4540.0037
LEU 4550.0036
GLU 4560.0048
ASN 4570.0058
ILE 4580.0045
PHE 4590.0055
GLU 4600.0047
ILE 4610.0033
TYR 4620.0047
LEU 4630.0044
SER 4640.0062
TYR 4650.0078
ASN 4660.0083
LYS 4670.0093
TYR 4680.0077
LEU 4690.0054
GLN 4700.0058
LEU 4710.0047
THR 4720.0064
ARG 4730.0074
ASN 4740.0071
SER 4750.0049
PHE 4760.0041
ALA 4770.0060
LEU 4780.0060
VAL 4790.0053
PRO 4800.0065
SER 4810.0060
LEU 4820.0046
GLN 4830.0049
ARG 4840.0037
LEU 4850.0022
MET 4860.0029
LEU 4870.0021
ARG 4880.0038
ARG 4890.0045
VAL 4900.0037
ALA 4910.0047
LEU 4920.0032
LYS 4930.0038
ASN 4940.0045
VAL 4950.0037
ASP 4960.0034
SER 4970.0047
SER 4980.0056
PRO 4990.0062
SER 5000.0048
PRO 5010.0049
PHE 5020.0047
GLN 5030.0056
PRO 5040.0064
LEU 5050.0058
ARG 5060.0066
ASN 5070.0068
LEU 5080.0053
THR 5090.0047
ILE 5100.0035
LEU 5110.0034
ASP 5120.0033
LEU 5130.0033
SER 5140.0037
ASN 5150.0039
ASN 5160.0058
ASN 5170.0064
ILE 5180.0059
ALA 5190.0065
ASN 5200.0061
ILE 5210.0052
ASN 5220.0045
ASP 5230.0047
ASP 5240.0038
MET 5250.0034
LEU 5260.0029
GLU 5270.0028
GLY 5280.0033
LEU 5290.0037
GLU 5300.0042
LYS 5310.0038
LEU 5320.0033
GLU 5330.0043
ILE 5340.0042
LEU 5350.0028
ASP 5360.0036
LEU 5370.0043
GLN 5380.0050
HIS 5390.0066
ASN 5400.0071
ASN 5410.0108
LEU 5420.0090
ALA 5430.0106
ARG 5440.0130
LEU 5450.0111
TRP 5460.0108
LYS 5470.0146
HIS 5480.0182
ALA 5490.0220
ASN 5500.0211
PRO 5510.0294
GLY 5520.0276
GLY 5530.0230
PRO 5540.0153
ILE 5550.0102
TYR 5560.0080
PHE 5570.0056
LEU 5580.0050
LYS 5590.0069
GLY 5600.0074
LEU 5610.0046
SER 5620.0065
HIS 5630.0065
LEU 5640.0051
HIS 5650.0064
ILE 5660.0055
LEU 5670.0030
ASN 5680.0033
LEU 5690.0023
GLU 5700.0036
SER 5710.0064
ASN 5720.0064
GLY 5730.0071
PHE 5740.0057
ASP 5750.0066
GLU 5760.0076
ILE 5770.0067
PRO 5780.0091
VAL 5790.0105
GLU 5800.0103
VAL 5810.0066
PHE 5820.0069
LYS 5830.0091
ASP 5840.0091
LEU 5850.0080
PHE 5860.0089
GLU 5870.0090
LEU 5880.0078
LYS 5890.0088
ILE 5900.0078
ILE 5910.0052
ASP 5920.0045
LEU 5930.0025
GLY 5940.0031
LEU 5950.0030
ASN 5960.0026
ASN 5970.0018
LEU 5980.0009
ASN 5990.0023
THR 6000.0042
LEU 6010.0038
PRO 6020.0057
ALA 6030.0068
SER 6040.0078
VAL 6050.0069
PHE 6060.0075
ASN 6070.0090
ASN 6080.0093
GLN 6090.0090
VAL 6100.0106
SER 6110.0107
LEU 6120.0095
LYS 6130.0102
SER 6140.0089
LEU 6150.0074
ASN 6160.0060
LEU 6170.0053
GLN 6180.0051
LYS 6190.0046
ASN 6200.0044
LEU 6210.0071
ILE 6220.0063
THR 6230.0069
SER 6240.0063
VAL 6250.0053
GLU 6260.0062
LYS 6270.0061
LYS 6280.0072
VAL 6290.0073
PHE 6300.0062
GLY 6310.0073
PRO 6320.0080
ALA 6330.0076
PHE 6340.0076
ARG 6350.0084
ASN 6360.0094
LEU 6370.0086
THR 6380.0090
GLU 6390.0081
LEU 6400.0071
ASP 6410.0056
MET 6420.0056
ARG 6430.0055
PHE 6440.0066
ASN 6450.0064
PRO 6460.0101
PHE 6470.0073
ASP 6480.0076
CYS 6490.0052
THR 6500.0049
CYS 6510.0071
GLU 6520.0109
SER 6530.0091
ILE 6540.0051
ALA 6550.0071
TRP 6560.0075
PHE 6570.0048
VAL 6580.0042
ASN 6590.0068
TRP 6600.0056
ILE 6610.0065
ASN 6620.0088
GLU 6630.0123
THR 6640.0114
HIS 6650.0114
THR 6660.0044
ASN 6670.0031
ILE 6680.0037
PRO 6690.0044
GLU 6700.0048
LEU 6710.0045
SER 6720.0072
SER 6730.0084
HIS 6740.0072
TYR 6750.0056
LEU 6760.0109
CYS 6770.0107
ASN 6780.0148
THR 6790.0147
PRO 6800.0142
PRO 6810.0205
HIS 6820.0186
TYR 6830.0149
HIS 6840.0191
GLY 6850.0196
PHE 6860.0148
PRO 6870.0113
VAL 6880.0060
ARG 6890.0074
LEU 6900.0110
PHE 6910.0100
ASP 6920.0137
THR 6930.0143
SER 6940.0220
SER 6950.0185
CYS 6960.0177
GLU 10.0480
ALA 20.0285
ALA 30.0153
ALA 40.0202
LYS 50.0161
MET 60.0102
GLN 70.0101
ARG 80.0069
LEU 90.0158
VAL 100.0205
LEU 110.0127
LEU 120.0114
LEU 130.0171
ALA 140.0160
ILE 150.0101
SER 160.0139
LEU 170.0152
LEU 180.0077
LEU 190.0104
TYR 200.0154
GLN 210.0099
ASP 220.0269
LEU 230.0370
PRO 240.0353
VAL 250.0299
ARG 260.0344
SER 270.0145
GLU 280.0283
PHE 290.0245
GLU 300.0108
LEU 310.0030
ASP 320.0063
ARG 330.0076
ILE 340.0047
CYS 350.0024
GLY 360.0061
TYR 370.0040
GLY 380.0042
THR 390.0073
ALA 400.0059
ARG 410.0034
CYS 420.0032
ARG 430.0037
LYS 440.0064
LYS 450.0064
CYS 460.0052
ARG 470.0060
SER 480.0121
GLN 490.0170
GLU 500.0133
TYR 510.0111
ARG 520.0099
ILE 530.0112
GLY 540.0116
ARG 550.0116
CYS 560.0093
PRO 570.0097
ASN 580.0097
THR 590.0111
TYR 600.0098
ALA 610.0092
CYS 620.0069
CYS 630.0067
LEU 640.0124
ARG 650.0182
LYS 660.0364
TRP 670.0448
ASP 680.0368
GLU 690.0352
SER 700.0342
LEU 710.0379
LEU 720.0332
ASN 730.0224
ARG 740.0254
THR 750.0271
LYS 760.0214
PRO 770.0136
GLU 780.0120
ALA 790.0168
ALA 800.0087
ALA 810.0114
LYS 820.0112
LYS 830.0100
GLU 840.0084
MET 850.0081
ASN 860.0046
LEU 870.0046
SER 880.0038
VAL 890.0045
GLY 900.0052
LEU 910.0071
GLY 920.0149
GLY 930.0209
GLY 940.0190
SER 950.0116
ASN 960.0035
LEU 970.0029
SER 980.0022
VAL 990.0028
GLY 1000.0045
LEU 1010.0075
GLY 1020.0076
GLU 1030.0088
ILE 1040.0078
GLY 1050.0104
GLY 1060.0144
GLY 1070.0136
SER 1080.0135
LYS 1090.0115
LEU 1100.0113
LEU 1110.0065
ASP 1120.0090
ILE 1130.0074
ASN 1140.0120
LEU 1150.0111
GLY 1160.0113
ARG 1170.0053
GLY 1180.0075
GLY 1190.0060
GLY 1200.0055
SER 1210.0026
MET 1220.0023
VAL 1230.0016
ASP 1240.0027
LEU 1250.0030
THR 1260.0039
PHE 1270.0046
GLY 1280.0059
GLY 1290.0064
VAL 1300.0072
GLY 1310.0041
GLY 1320.0054
GLY 1330.0066
SER 1340.0066
THR 1350.0076
PHE 1360.0077
THR 1370.0086
PHE 1380.0081
PHE 1390.0092
PRO 1400.0092
LEU 1410.0113
VAL 1420.0112
ILE 1430.0137
GLY 1440.0148
GLY 1450.0173
GLY 1460.0220
SER 1470.0201
ASP 1480.0156
ALA 1490.0163
MET 1500.0133
TYR 1510.0075
LEU 1520.0074
GLY 1530.0071
PHE 1540.0071
ALA 1550.0068
ALA 1560.0093
GLY 1570.0102
GLY 1580.0094
GLY 1590.0088
SER 1600.0073
ALA 1610.0068
GLY 1620.0045
GLY 1630.0043
GLU 1640.0042
ASN 1650.0028
HIS 1660.0037
VAL 1670.0033
ALA 1680.0026
PHE 1690.0025
GLY 1700.0023
PRO 1710.0044
GLY 1720.0043
PRO 1730.0040
GLY 1740.0034
VAL 1750.0030
ASP 1760.0026
LEU 1770.0029
THR 1780.0030
PHE 1790.0033
GLY 1800.0037
GLY 1810.0033
VAL 1820.0023
GLN 1830.0017
PHE 1840.0014
ALA 1850.0012
MET 1860.0014
VAL 1870.0025
ASN 1880.0045
ASN 1890.0063
GLY 1900.0080
PRO 1910.0030
GLY 1920.0147
PRO 1930.0154
GLY 1940.0052
GLU 1950.0087
SER 1960.0254
PHE 1970.0140
THR 1980.0113
ALA 1990.0105
GLN 2000.0163
PRO 2010.0185
ALA 2020.0134
ASP 2030.0234
MET 2040.0447
GLN 2050.0449
ALA 2060.0339
GLY 2070.0169
ILE 2080.0516
LYS 2090.0299
GLY 2100.0835
PRO 2110.0353
GLY 2120.0237
PRO 2130.0140
GLY 2140.0381
GLY 2150.0277
SER 2160.0190
ILE 2170.0263
GLN 2180.0154
VAL 2190.0122
ILE 2200.0133
ASN 2210.0198
GLY 2220.0171
SER 2230.0168
THR 2240.0122
ILE 2250.0148
GLY 2260.0175
THR 2270.0147
GLY 2280.0069
SER 2290.0121
LYS 2300.0108
LYS 2310.0076
THR 2320.0088
ILE 2330.0057
LEU 2340.0032
ILE 2350.0054
TYR 2360.0027
SER 2370.0064
ILE 2380.0084
ILE 2390.0081
GLY 2400.0110
VAL 2410.0147
LYS 2420.0099
LYS 2430.0090
GLY 2440.0107
THR 2450.0098
LEU 2460.0090
ALA 2470.0051
TRP 2480.0022
ALA 2490.0077
ARG 2500.0097
THR 2510.0197
GLY 2520.0211
PHE 2530.0144
SER 2540.0159
PRO 2550.0122
ALA 2560.0139
LYS 2570.0131
LYS 2580.0083
LEU 2590.0046
ASN 2600.0058
ALA 2610.0079
GLY 2620.0072
VAL 2630.0107
VAL 2640.0162
ARG 2650.0141
VAL 2660.0115
PHE 2670.0091
PHE 2680.0089
LEU 2690.0080
ASN 2700.0090
GLN 2710.0074
LYS 2720.0049
LYS 2730.0072
ALA 2740.0088
LYS 2750.0073
ASP 2760.0079
VAL 2770.0080
LEU 2780.0173
ARG 2790.0175
LYS 2800.0094
THR 2810.0023
SER 2820.0017
ARG 2830.0029
PRO 2840.0038
MET 2850.0047
VAL 2860.0050
ASP 2870.0048
LEU 2880.0045
THR 2890.0047
PHE 2900.0042
GLY 2910.0064
GLY 2920.0095

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elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.